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Conserved domains on  [gi|440526697|emb|CCP52181|]
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chlamydial polymorphic outer membrane protein repeat [Chlamydia trachomatis L2b/8200/07]

Protein Classification

autotransporter outer membrane beta-barrel domain-containing protein( domain architecture ID 10276415)

autotransporter outer membrane beta-barrel domain-containing protein similar to Neisseria meningitidis autotransporter NalP, a virulence-related protein which is secreted via the C-terminal translocator domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Autotransporter smart00869
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
 611-868 2.57e-20

Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.


:

Pssm-ID: 214872 [Multi-domain]  Cd Length: 268  Bit Score: 91.86  E-value: 2.57e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   611 GSAVSNLFYVHDSSGKPIDNWHHRSLGYLFGISTHSLDDHSFCLAAGQLLGKSS-DSFITSTETTSYIATVQAQLATSLM 689
Cdd:smart00869   1 GRGLGGFLRQDSSGSGGSAGFDYDSYGLQLGADYRLSDNGNLSLGFAAGYGNSKvDFSGNKGSGKGDVDSYGLGLYAGYS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   690 K-----ISAQACYNESIHELKTKYRSFSKE-GFGSWHSVAVSGEVCASIPIVSNGSglfSSFSIFSKLQGFSGTQDGFEE 763
Cdd:smart00869  81 LgnglyLDAQLGYGRSDNDTKRKVTLGGAGrAKGSYDGTGYGASLEAGYRFYLGGG---LTLTPFAGLAYSRVRQDGFTE 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   764 SSGEIR--SFSASSFRNISLPIGITFEKKSQKTRTYY---YFLGAYIQDLKRDVESGPVVLLKNAVSWDAPMANLDSRAY 838
Cdd:smart00869 158 SGGGAFglSVDSQSLDSLSLPLGLRLEYRLALGDGATltpYLRLAYVHDFYDDNPVVTASLLGSGASFTTSGTDLDRNAA 237

                          250       260       270
                   ....*....|....*....|....*....|.
gi 440526697   839 MFRLTNQRALHRLQTL-LNVSCVLRGQSHSY 868
Cdd:smart00869 238 ELGLGLSAKLSNGLSLsLNYDGEFGGSSRSH 268
ChlamPMP_M super family cl06537
Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia ...
 425-564 2.01e-10

Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia polymorphic membrane proteins. Chlamydia pneumoniae is an obligate intracellular bacterium and a common human pathogen causing infection of the upper and lower respiratory tract. This domain is found between the beta-helical repeats (pfam02415) and the C-terminal pfam03797. This domain is excised subsequent to secretion.


The actual alignment was detected with superfamily member pfam07548:

Pssm-ID: 311484  Cd Length: 170  Bit Score: 60.24  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  425 GRLVLKDRAVLSAPSLSQDpQALLIMEAGTSLK--------TSSD--LKLATLSIPLHSLDTEKSVTI-------HAPNL 487
Cdd:pfam07548   1 GTLVLEEGAELTVNSFTQT-GGRLSLGPGAVLSnvtmghgaIAANgaLTINNLGIDLSSFLKNSPPCIfvppegnTPATI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  488 SIQ---------KIFLSNSGDENFYENVELLSKEQNnIPLLTL---PKEQSHLHLPDGNLSS----HFGYQGDWTFSWKD 551
Cdd:pfam07548  80 TSTtggsvvlsgELSLVDDPEGTFYDNPDLLRSDAK-IPLLSLsdaPSDSLVSNVQNLVTSGdeapHYGYQGSWTLDWDK 158

                         170
                  ....*....|...
gi 440526697  552 SDEGhSLIANWTP 564
Cdd:pfam07548 159 NQNG-TLRATWNP 170
PRK09752 super family cl32407
AIDA-I family autotransporter YfaL;
97-295 4.33e-06

AIDA-I family autotransporter YfaL;


The actual alignment was detected with superfamily member PRK09752:

Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 50.83  E-value: 4.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   97 DLSIQNFRFLSFTDCSSKESSPSIIHQKNGQLSL--RNNGSMS-FCRNHAEG---SGGAISADAFSLQhNYLFTAFEENS 170
Cdd:PRK09752   56 DWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLspENETGMTlFANNTVSGeynNGGAIFAKENSTL-NLTDVIFSGNV 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  171 SKGNGGAIQA----QTFSLSRNVSPISFARNRA-DLNGGAICCSN--LICSGNV--NPLFFTGNSATNG-GAICCISDLN 240
Cdd:PRK09752  135 AGGYGGAIYSsgtnDTGAVDLRVTNAMFRNNIAnDGKGGAIYTINndVYLSDVIfdNNQAYTSTSYSDGdGGAIDVTDNN 214

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 440526697  241 TSEKGSLSLACNQETLFASNSAKEKGGAIYAKHMVLRYNGPVSFINNSAKIGGAI 295
Cdd:PRK09752  215 SDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVL 269
 
Name Accession Description Interval E-value
Autotransporter smart00869
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
 611-868 2.57e-20

Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.


Pssm-ID: 214872 [Multi-domain]  Cd Length: 268  Bit Score: 91.86  E-value: 2.57e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   611 GSAVSNLFYVHDSSGKPIDNWHHRSLGYLFGISTHSLDDHSFCLAAGQLLGKSS-DSFITSTETTSYIATVQAQLATSLM 689
Cdd:smart00869   1 GRGLGGFLRQDSSGSGGSAGFDYDSYGLQLGADYRLSDNGNLSLGFAAGYGNSKvDFSGNKGSGKGDVDSYGLGLYAGYS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   690 K-----ISAQACYNESIHELKTKYRSFSKE-GFGSWHSVAVSGEVCASIPIVSNGSglfSSFSIFSKLQGFSGTQDGFEE 763
Cdd:smart00869  81 LgnglyLDAQLGYGRSDNDTKRKVTLGGAGrAKGSYDGTGYGASLEAGYRFYLGGG---LTLTPFAGLAYSRVRQDGFTE 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   764 SSGEIR--SFSASSFRNISLPIGITFEKKSQKTRTYY---YFLGAYIQDLKRDVESGPVVLLKNAVSWDAPMANLDSRAY 838
Cdd:smart00869 158 SGGGAFglSVDSQSLDSLSLPLGLRLEYRLALGDGATltpYLRLAYVHDFYDDNPVVTASLLGSGASFTTSGTDLDRNAA 237

                          250       260       270
                   ....*....|....*....|....*....|.
gi 440526697   839 MFRLTNQRALHRLQTL-LNVSCVLRGQSHSY 868
Cdd:smart00869 238 ELGLGLSAKLSNGLSLsLNYDGEFGGSSRSH 268
ChlamPMP_M pfam07548
Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia ...
 425-564 2.01e-10

Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia polymorphic membrane proteins. Chlamydia pneumoniae is an obligate intracellular bacterium and a common human pathogen causing infection of the upper and lower respiratory tract. This domain is found between the beta-helical repeats (pfam02415) and the C-terminal pfam03797. This domain is excised subsequent to secretion.


Pssm-ID: 311484  Cd Length: 170  Bit Score: 60.24  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  425 GRLVLKDRAVLSAPSLSQDpQALLIMEAGTSLK--------TSSD--LKLATLSIPLHSLDTEKSVTI-------HAPNL 487
Cdd:pfam07548   1 GTLVLEEGAELTVNSFTQT-GGRLSLGPGAVLSnvtmghgaIAANgaLTINNLGIDLSSFLKNSPPCIfvppegnTPATI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  488 SIQ---------KIFLSNSGDENFYENVELLSKEQNnIPLLTL---PKEQSHLHLPDGNLSS----HFGYQGDWTFSWKD 551
Cdd:pfam07548  80 TSTtggsvvlsgELSLVDDPEGTFYDNPDLLRSDAK-IPLLSLsdaPSDSLVSNVQNLVTSGdeapHYGYQGSWTLDWDK 158

                         170
                  ....*....|...
gi 440526697  552 SDEGhSLIANWTP 564
Cdd:pfam07548 159 NQNG-TLRATWNP 170
Autotransporter pfam03797
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
 610-842 3.40e-07

Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.


Pssm-ID: 461054 [Multi-domain]  Cd Length: 255  Bit Score: 52.39  E-value: 3.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  610 WGSAVSNLFYVHDSSGkpIDNWHHRSLGYLFGISTHSLDDHSFCLAAGQLLGKSS-DSFITSTETTSYIATVQAQLATSL 688
Cdd:pfam03797   2 WARGFGGRGKQDGDGG--AAGYDADTGGLQVGADYRLGDNLRLGVAFGYSRSDADvDGRGGSGDSDSYSLGLYGTYYGDG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  689 -MKISAQACYNESIHELK--TKYRSFSKEGFGSWHSVAVSGEVCASIPIVSNGSglfSSFSIFSKLQGFSGTQDGFEESS 765
Cdd:pfam03797  80 gWYLDGGLGYGWHDNDTRrsVDLGGFSETAKGDYDGNGFGASLEAGYRFALGGG---WTLEPFAGLAYVRLRLDGFTESG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  766 GEIR-SFSASSFRNISLPIGITFEKKSQK--TRTYYYFLGAYIQDLK--RDVESGPVVLLKNAVSWDAPMANLDSRAYMF 840
Cdd:pfam03797 157 GAAAlSVDSQSYDSLTGRLGLRLSYTFDLggGTLTPYARLGWRHEFGddDPVTTAAFAGLSGAGSFTVAGADLARDSLEL 236


                  ..
gi 440526697  841 RL 842
Cdd:pfam03797 237 GA 238
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
97-295 4.33e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 50.83  E-value: 4.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   97 DLSIQNFRFLSFTDCSSKESSPSIIHQKNGQLSL--RNNGSMS-FCRNHAEG---SGGAISADAFSLQhNYLFTAFEENS 170
Cdd:PRK09752   56 DWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLspENETGMTlFANNTVSGeynNGGAIFAKENSTL-NLTDVIFSGNV 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  171 SKGNGGAIQA----QTFSLSRNVSPISFARNRA-DLNGGAICCSN--LICSGNV--NPLFFTGNSATNG-GAICCISDLN 240
Cdd:PRK09752  135 AGGYGGAIYSsgtnDTGAVDLRVTNAMFRNNIAnDGKGGAIYTINndVYLSDVIfdNNQAYTSTSYSDGdGGAIDVTDNN 214

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 440526697  241 TSEKGSLSLACNQETLFASNSAKEKGGAIYAKHMVLRYNGPVSFINNSAKIGGAI 295
Cdd:PRK09752  215 SDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVL 269
POMP_repeat TIGR01376
Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of ...
 132-158 1.15e-04

Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of about 27 residues that appears from twice to over twenty times in Chlamydial polymorphic outer membrane proteins (POMP). Characteristic motifs in the repeat are FXXN and GGAI. Except for a few apparently truncated examples, Chlamydial proteins have this repeat region if and only if they also have the autotransporter beta-domain (pfam03797) at the C-terminus, with Phe as the C-terminal residue. This repeat is observed, but is very rare, outside the Chlamydias.


Pssm-ID: 273587  Cd Length: 27  Bit Score: 39.75  E-value: 1.15e-04
                          10        20
                  ....*....|....*....|....*..
gi 440526697  132 NNGSMSFCRNHAEGSGGAISADAFSLQ 158
Cdd:TIGR01376   1 NNGTILFSSNSAKGSGGAIYATKISIS 27
 
Name Accession Description Interval E-value
Autotransporter smart00869
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
 611-868 2.57e-20

Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.


Pssm-ID: 214872 [Multi-domain]  Cd Length: 268  Bit Score: 91.86  E-value: 2.57e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   611 GSAVSNLFYVHDSSGKPIDNWHHRSLGYLFGISTHSLDDHSFCLAAGQLLGKSS-DSFITSTETTSYIATVQAQLATSLM 689
Cdd:smart00869   1 GRGLGGFLRQDSSGSGGSAGFDYDSYGLQLGADYRLSDNGNLSLGFAAGYGNSKvDFSGNKGSGKGDVDSYGLGLYAGYS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   690 K-----ISAQACYNESIHELKTKYRSFSKE-GFGSWHSVAVSGEVCASIPIVSNGSglfSSFSIFSKLQGFSGTQDGFEE 763
Cdd:smart00869  81 LgnglyLDAQLGYGRSDNDTKRKVTLGGAGrAKGSYDGTGYGASLEAGYRFYLGGG---LTLTPFAGLAYSRVRQDGFTE 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   764 SSGEIR--SFSASSFRNISLPIGITFEKKSQKTRTYY---YFLGAYIQDLKRDVESGPVVLLKNAVSWDAPMANLDSRAY 838
Cdd:smart00869 158 SGGGAFglSVDSQSLDSLSLPLGLRLEYRLALGDGATltpYLRLAYVHDFYDDNPVVTASLLGSGASFTTSGTDLDRNAA 237

                          250       260       270
                   ....*....|....*....|....*....|.
gi 440526697   839 MFRLTNQRALHRLQTL-LNVSCVLRGQSHSY 868
Cdd:smart00869 238 ELGLGLSAKLSNGLSLsLNYDGEFGGSSRSH 268
ChlamPMP_M pfam07548
Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia ...
 425-564 2.01e-10

Chlamydia polymorphic membrane protein middle domain; This family contains several Chlamydia polymorphic membrane proteins. Chlamydia pneumoniae is an obligate intracellular bacterium and a common human pathogen causing infection of the upper and lower respiratory tract. This domain is found between the beta-helical repeats (pfam02415) and the C-terminal pfam03797. This domain is excised subsequent to secretion.


Pssm-ID: 311484  Cd Length: 170  Bit Score: 60.24  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  425 GRLVLKDRAVLSAPSLSQDpQALLIMEAGTSLK--------TSSD--LKLATLSIPLHSLDTEKSVTI-------HAPNL 487
Cdd:pfam07548   1 GTLVLEEGAELTVNSFTQT-GGRLSLGPGAVLSnvtmghgaIAANgaLTINNLGIDLSSFLKNSPPCIfvppegnTPATI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  488 SIQ---------KIFLSNSGDENFYENVELLSKEQNnIPLLTL---PKEQSHLHLPDGNLSS----HFGYQGDWTFSWKD 551
Cdd:pfam07548  80 TSTtggsvvlsgELSLVDDPEGTFYDNPDLLRSDAK-IPLLSLsdaPSDSLVSNVQNLVTSGdeapHYGYQGSWTLDWDK 158

                         170
                  ....*....|...
gi 440526697  552 SDEGhSLIANWTP 564
Cdd:pfam07548 159 NQNG-TLRATWNP 170
Autotransporter pfam03797
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
 610-842 3.40e-07

Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.


Pssm-ID: 461054 [Multi-domain]  Cd Length: 255  Bit Score: 52.39  E-value: 3.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  610 WGSAVSNLFYVHDSSGkpIDNWHHRSLGYLFGISTHSLDDHSFCLAAGQLLGKSS-DSFITSTETTSYIATVQAQLATSL 688
Cdd:pfam03797   2 WARGFGGRGKQDGDGG--AAGYDADTGGLQVGADYRLGDNLRLGVAFGYSRSDADvDGRGGSGDSDSYSLGLYGTYYGDG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  689 -MKISAQACYNESIHELK--TKYRSFSKEGFGSWHSVAVSGEVCASIPIVSNGSglfSSFSIFSKLQGFSGTQDGFEESS 765
Cdd:pfam03797  80 gWYLDGGLGYGWHDNDTRrsVDLGGFSETAKGDYDGNGFGASLEAGYRFALGGG---WTLEPFAGLAYVRLRLDGFTESG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  766 GEIR-SFSASSFRNISLPIGITFEKKSQK--TRTYYYFLGAYIQDLK--RDVESGPVVLLKNAVSWDAPMANLDSRAYMF 840
Cdd:pfam03797 157 GAAAlSVDSQSYDSLTGRLGLRLSYTFDLggGTLTPYARLGWRHEFGddDPVTTAAFAGLSGAGSFTVAGADLARDSLEL 236


                  ..
gi 440526697  841 RL 842
Cdd:pfam03797 237 GA 238
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
97-295 4.33e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 50.83  E-value: 4.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697   97 DLSIQNFRFLSFTDCSSKESSPSIIHQKNGQLSL--RNNGSMS-FCRNHAEG---SGGAISADAFSLQhNYLFTAFEENS 170
Cdd:PRK09752   56 DWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLspENETGMTlFANNTVSGeynNGGAIFAKENSTL-NLTDVIFSGNV 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440526697  171 SKGNGGAIQA----QTFSLSRNVSPISFARNRA-DLNGGAICCSN--LICSGNV--NPLFFTGNSATNG-GAICCISDLN 240
Cdd:PRK09752  135 AGGYGGAIYSsgtnDTGAVDLRVTNAMFRNNIAnDGKGGAIYTINndVYLSDVIfdNNQAYTSTSYSDGdGGAIDVTDNN 214

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 440526697  241 TSEKGSLSLACNQETLFASNSAKEKGGAIYAKHMVLRYNGPVSFINNSAKIGGAI 295
Cdd:PRK09752  215 SDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVL 269
POMP_repeat TIGR01376
Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of ...
 132-158 1.15e-04

Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of about 27 residues that appears from twice to over twenty times in Chlamydial polymorphic outer membrane proteins (POMP). Characteristic motifs in the repeat are FXXN and GGAI. Except for a few apparently truncated examples, Chlamydial proteins have this repeat region if and only if they also have the autotransporter beta-domain (pfam03797) at the C-terminus, with Phe as the C-terminal residue. This repeat is observed, but is very rare, outside the Chlamydias.


Pssm-ID: 273587  Cd Length: 27  Bit Score: 39.75  E-value: 1.15e-04
                          10        20
                  ....*....|....*....|....*..
gi 440526697  132 NNGSMSFCRNHAEGSGGAISADAFSLQ 158
Cdd:TIGR01376   1 NNGTILFSSNSAKGSGGAIYATKISIS 27
POMP_repeat TIGR01376
Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of ...
 251-276 1.95e-04

Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of about 27 residues that appears from twice to over twenty times in Chlamydial polymorphic outer membrane proteins (POMP). Characteristic motifs in the repeat are FXXN and GGAI. Except for a few apparently truncated examples, Chlamydial proteins have this repeat region if and only if they also have the autotransporter beta-domain (pfam03797) at the C-terminus, with Phe as the C-terminal residue. This repeat is observed, but is very rare, outside the Chlamydias.


Pssm-ID: 273587  Cd Length: 27  Bit Score: 38.98  E-value: 1.95e-04
                          10        20
                  ....*....|....*....|....*.
gi 440526697  251 CNQETLFASNSAKEKGGAIYAKHMVL 276
Cdd:TIGR01376   1 NNGTILFSSNSAKGSGGAIYATKISI 26
POMP_repeat TIGR01376
Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of ...
 160-186 2.98e-03

Chlamydial polymorphic outer membrane protein repeat; This model represents a repeat region of about 27 residues that appears from twice to over twenty times in Chlamydial polymorphic outer membrane proteins (POMP). Characteristic motifs in the repeat are FXXN and GGAI. Except for a few apparently truncated examples, Chlamydial proteins have this repeat region if and only if they also have the autotransporter beta-domain (pfam03797) at the C-terminus, with Phe as the C-terminal residue. This repeat is observed, but is very rare, outside the Chlamydias.


Pssm-ID: 273587  Cd Length: 27  Bit Score: 35.90  E-value: 2.98e-03
                          10        20
                  ....*....|....*....|....*..
gi 440526697  160 NYLFTAFEENSSKGNGGAIQAQTFSLS 186
Cdd:TIGR01376   1 NNGTILFSSNSAKGSGGAIYATKISIS 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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