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Conserved domains on  [gi|810720542|emb|COL00694|]
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Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae]

Protein Classification

YlbG family protein( domain architecture ID 10011794)

YlbG/YdgE family protein is a DUF2129 domain-containing protein; similar to Streptococcus pyogenes UPF0298 protein SpyM51529

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02302 PRK02302
hypothetical protein; Provisional
 1-82 2.64e-44

hypothetical protein; Provisional


:

Pssm-ID: 179410  Cd Length: 89  Bit Score: 137.48  E-value: 2.64e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542  1 MFEKVNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPFVGNL 80
Cdd:PRK02302  1 MFEKQERIGLIVYLYYNRDARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQNFVGNL 80


                ..
gi 810720542 81 YR 82
Cdd:PRK02302 81 YR 82
 
Name Accession Description Interval E-value
PRK02302 PRK02302
hypothetical protein; Provisional
 1-82 2.64e-44

hypothetical protein; Provisional


Pssm-ID: 179410  Cd Length: 89  Bit Score: 137.48  E-value: 2.64e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542  1 MFEKVNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPFVGNL 80
Cdd:PRK02302  1 MFEKQERIGLIVYLYYNRDARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQNFVGNL 80


                ..
gi 810720542 81 YR 82
Cdd:PRK02302 81 YR 82
DUF2129 pfam09902
Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various ...
 7-76 4.04e-24

Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various hypothetical prokaryotic proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 430913  Cd Length: 70  Bit Score: 85.99  E-value: 4.04e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542   7 RSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPF 76
Cdd:pfam09902  1 RQGLIVYLYSLKQAKQLRRYGDVHYVSKKMKYVVLYVNQEDVEETIEKLKSLKFVKKVEPSYRPELKTEF 70
YlbG COG4471
Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];
2-80 1.28e-18

Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];


Pssm-ID: 443568  Cd Length: 92  Bit Score: 72.57  E-value: 1.28e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 810720542  2 FEKVNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPFVGNL 80
Cdd:COG4471   1 FMMQKRQGLIVWLYSLKQAKQLRRYGHVHYVSKKMKYAVLYVDQDDIEETMEKLERLPFVKKVEPSYRPDIKTEFENAK 79
 
Name Accession Description Interval E-value
PRK02302 PRK02302
hypothetical protein; Provisional
 1-82 2.64e-44

hypothetical protein; Provisional


Pssm-ID: 179410  Cd Length: 89  Bit Score: 137.48  E-value: 2.64e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542  1 MFEKVNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPFVGNL 80
Cdd:PRK02302  1 MFEKQERIGLIVYLYYNRDARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAIDEIDQNFVGNL 80


                ..
gi 810720542 81 YR 82
Cdd:PRK02302 81 YR 82
DUF2129 pfam09902
Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various ...
 7-76 4.04e-24

Uncharacterized protein conserved in bacteria (DUF2129); This domain, found in various hypothetical prokaryotic proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 430913  Cd Length: 70  Bit Score: 85.99  E-value: 4.04e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542   7 RSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPF 76
Cdd:pfam09902  1 RQGLIVYLYSLKQAKQLRRYGDVHYVSKKMKYVVLYVNQEDVEETIEKLKSLKFVKKVEPSYRPELKTEF 70
YlbG COG4471
Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];
2-80 1.28e-18

Uncharacterized conserved protein YlbG, UPF0298 family [Function unknown];


Pssm-ID: 443568  Cd Length: 92  Bit Score: 72.57  E-value: 1.28e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 810720542  2 FEKVNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKVRVCHIQELETPFVGNL 80
Cdd:COG4471   1 FMMQKRQGLIVWLYSLKQAKQLRRYGHVHYVSKKMKYAVLYVDQDDIEETMEKLERLPFVKKVEPSYRPDIKTEFENAK 79
PRK02886 PRK02886
hypothetical protein; Provisional
 5-64 2.37e-08

hypothetical protein; Provisional


Pssm-ID: 179491  Cd Length: 87  Bit Score: 46.59  E-value: 2.37e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 810720542  5 VNRSGLIIYLYYNRDAKKLQDYGDITYHSKKHRYLQLYVPTQEVEQLVGRLSKEKFIKKV 64
Cdd:PRK02886  3 NNRQGIIVWLHSLKQAKQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRV 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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