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Conserved domains on  [gi|940351683|emb|CUR85275|]
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tail protein [Salmonella enterica subsp. enterica serovar Weltevreden]

Protein Classification

phage tail tape measure protein( domain architecture ID 11474537)

phage tail tape measure protein similar to Escherichia virus Lambda tape measure protein, also called minor tail protein H, which controls tail length by stopping tail tube protein polymerization

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
tape_meas_lam_C TIGR01541
phage tail tape measure protein, lambda family; This model represents a relatively ...
 653-992 2.82e-118

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


:

Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 366.47  E-value: 2.82e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   653 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnaLNELKKKTLTLTSQLADEESRVRQQHAMA 732
Cdd:TIGR01541    1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKL---------LEEAEQKALEALKKLAEATASIRAQNKRQ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   733 LATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTL 812
Cdd:TIGR01541   72 LDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLA 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   813 GASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFG 892
Cdd:TIGR01541  152 GARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSLIGGA 231

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   893 TSAGGStPSGAYSSAALSVIPNADGGvYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA 972
Cdd:TIGR01541  232 ASGGNS-SSGAMASYGAAYVPNFAGG-GYTAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVAA 309

                          330       340
                   ....*....|....*....|...
gi 940351683   973 GSGGMA---MFAPEYNIEIHNDA 992
Cdd:TIGR01541  310 GSGGLGpngMFGGETAISINNDG 332
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 229-426 9.38e-50

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


:

Pssm-ID: 429120  Cd Length: 205  Bit Score: 174.83  E-value: 9.38e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   229 LERTGTATHTLGLKSAAARRELGVLAGELARGN----------------FGalrGSGITLANRAGWIEQLMSPKGMMLGG 292
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQspltvllqqggqikdmFG---GIGPALKALGGYVLGLINPLTLAAAA 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   293 LAGgvaaavYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVA 372
Cdd:pfam06791   78 AAV------GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLE 151

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 940351683   373 MVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIR 426
Cdd:pfam06791  152 GVIRAAARMEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 486-771 6.59e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 6.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  486 REDTLDEKIATLQEKIARGRKtpwtvsssQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQ----NAALN 561
Cdd:COG1196   240 ELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERR 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  562 RDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKpktYHNDEARRLLLQYSQQQAQTEGQLAAAK 641
Cdd:COG1196   312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEEL 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  642 LSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADE 721
Cdd:COG1196   389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 940351683  722 ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKG 771
Cdd:COG1196   469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
 
Name Accession Description Interval E-value
tape_meas_lam_C TIGR01541
phage tail tape measure protein, lambda family; This model represents a relatively ...
 653-992 2.82e-118

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 366.47  E-value: 2.82e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   653 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnaLNELKKKTLTLTSQLADEESRVRQQHAMA 732
Cdd:TIGR01541    1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKL---------LEEAEQKALEALKKLAEATASIRAQNKRQ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   733 LATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTL 812
Cdd:TIGR01541   72 LDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLA 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   813 GASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFG 892
Cdd:TIGR01541  152 GARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSLIGGA 231

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   893 TSAGGStPSGAYSSAALSVIPNADGGvYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA 972
Cdd:TIGR01541  232 ASGGNS-SSGAMASYGAAYVPNFAGG-GYTAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVAA 309

                          330       340
                   ....*....|....*....|...
gi 940351683   973 GSGGMA---MFAPEYNIEIHNDA 992
Cdd:TIGR01541  310 GSGGLGpngMFGGETAISINNDG 332
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 229-426 9.38e-50

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 174.83  E-value: 9.38e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   229 LERTGTATHTLGLKSAAARRELGVLAGELARGN----------------FGalrGSGITLANRAGWIEQLMSPKGMMLGG 292
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQspltvllqqggqikdmFG---GIGPALKALGGYVLGLINPLTLAAAA 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   293 LAGgvaaavYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVA 372
Cdd:pfam06791   78 AAV------GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLE 151

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 940351683   373 MVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIR 426
Cdd:pfam06791  152 GVIRAAARMEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
431-1031 2.68e-38

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444092 [Multi-domain]  Cd Length: 603  Bit Score: 152.46  E-value: 2.68e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  431 QGRVADAAKIAMSAYSEEMNKRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARGRKTPWT 510
Cdd:COG5281     2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  511 VSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRN 590
Cdd:COG5281    82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  591 AALERENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG5281   162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG5281   242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLAQGGNVAG 830
Cdd:COG5281   322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  831 MTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSI--LADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAyssaa 908
Cdd:COG5281   402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIasIADALANAALASAADALGGALAGALGGLFGGGGGAAAG----- 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  909 lsvipnadGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAAGSGGMA--MFAPEYNI 986
Cdd:COG5281   477 --------AAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAAGGGGGAavVVNITTPD 548

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 940351683  987 EIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGGR 1031
Cdd:COG5281   549 AAGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAA 593
Tape_meas_lam_C pfam09718
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ...
 808-883 3.80e-23

Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.


Pssm-ID: 430770 [Multi-domain]  Cd Length: 76  Bit Score: 93.88  E-value: 3.80e-23
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683   808 GDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLG 883
Cdd:pfam09718    1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPLA 76
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 486-771 6.59e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 6.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  486 REDTLDEKIATLQEKIARGRKtpwtvsssQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQ----NAALN 561
Cdd:COG1196   240 ELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERR 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  562 RDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKpktYHNDEARRLLLQYSQQQAQTEGQLAAAK 641
Cdd:COG1196   312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEEL 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  642 LSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADE 721
Cdd:COG1196   389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 940351683  722 ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKG 771
Cdd:COG1196   469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
PTZ00121 PTZ00121
MAEBL; Provisional
 515-795 3.62e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 3.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  515 QTEYDQQQLNELK---EQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVA-RITAMQYADAAVRN 590
Cdd:PTZ00121 1399 KAEEDKKKADELKkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKKK 1478

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  591 AALERENERHKKALSQQAKKPktyhnDEARRlllqysqqqaQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKA-----DEAKK----------AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  671 TADEQSVLAHKDEIALALQKLDISQQ---------DLQHQNALNELKKKTLTLTSQLADEESRVRQQHA-MALATMGMGD 740
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAE 1623

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 940351683  741 QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
 498-795 3.91e-05

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 47.44  E-value: 3.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   498 QEKIARGRKTPWTV-------------SSSQTEYDQQQLNELKEQKRQKDL-LDAKAQAERNYQETQKRRNEQNAALNRD 563
Cdd:pfam09731   88 QVKIPRQSGVSSEVaeeekeatkdaaeAKAQLPKSEQEKEKALEEVLKEAIsKAESATAVAKEAKDDAIQAVKAHTDSLK 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   564 NETESLRHQREVARITAMQYADAAVRNAALERENERhkkalsQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKls 643
Cdd:pfam09731  168 EASDTAEISREKATDSALQKAEALAEKLKEVINLAK------QSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQ-- 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   644 TTEKMTEAHKQLLS-----FQQRIA----DLS------GKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELK 708
Cdd:pfam09731  240 SLAKLVDQYKELVAserivFQQELVsifpDIIpvlkedNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALE 319

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   709 KKTLTLTSQlaDEESRVRQQHAMALATMGMGDQQRgryEERLKIQQHYQEQLE-QLKRDSKAKGTYGSDEYRQAEQALKG 787
Cdd:pfam09731  320 KQKEELDKL--AEELSARLEEVRAADEAQLRLEFE---REREEIRESYEEKLRtELERQAEAHEEHLKDVLVEQEIELQR 394


                   ....*...
gi 940351683   788 SLDRRLAE 795
Cdd:pfam09731  395 EFLQDIKE 402
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 486-786 4.02e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 47.66  E-value: 4.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   486 REDTLDEKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERnYQETQKRRNEQNAALNRdne 565
Cdd:TIGR00618  213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LRAQEAVLEETQERINR--- 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   566 teslrhQREVARITAMQYADAAVRnaalERENERHKKALSQQAKKPKTYHndeaRRLLLQYSQQQAQTEGQLAAAKLSTT 645
Cdd:TIGR00618  289 ------ARKAAPLAAHIKAVTQIE----QQAQRIHTELQSKMRSRAKLLM----KRAAHVKQQSSIEEQRRLLQTLHSQE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   646 EKMTEAHKQLLSFQQRIAdlsgkKLTADEQSVLAHKDEIALALQKLDISQQDLQhqnALNELKKKTLTLTSqladEESRV 725
Cdd:TIGR00618  355 IHIRDAHEVATSIREISC-----QQHTLTQHIHTLQQQKTTLTQKLQSLCKELD---ILQREQATIDTRTS----AFRDL 422

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 940351683   726 RQQHAMALATMGMgdQQRGRYEERLKIQQHYQEQleQLKRDSKAKGTYGSDEYRQAEQALK 786
Cdd:TIGR00618  423 QGQLAHAKKQQEL--QQRYAELCAAAITCTAQCE--KLEKIHLQESAQSLKEREQQLQTKE 479
PTZ00121 PTZ00121
MAEBL; Provisional
 421-794 7.66e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 7.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  421 QLEQIRVLGEQGRVADAAKIAMSAYSEEMNKRMGDVHDNlgwierawnavGDAAKWAWDRMLDIGREDTL---DEKIATL 497
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN-----------EEIRKFEEARMAHFARRQAAikaEEARKAD 1281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  498 QEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNA---------ALNRDNETES 568
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaakaeAEAAADEAEA 1361

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  569 LRHQREVARIT---AMQYADAAVRNAALERENERHKKALSQQAKKPktyhnDEARRlllqysQQQAQTEGQLAAAKLSTT 645
Cdd:PTZ00121 1362 AEEKAEAAEKKkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA-----DELKK------AAAAKKKADEAKKKAEEK 1430

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  646 EKMTEAHKQllSFQQRIADLSGKKltADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQlADE---- 721
Cdd:PTZ00121 1431 KKADEAKKK--AEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK-ADEakka 1505

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 940351683  722 -ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLA 794
Cdd:PTZ00121 1506 aEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
 
Name Accession Description Interval E-value
tape_meas_lam_C TIGR01541
phage tail tape measure protein, lambda family; This model represents a relatively ...
 653-992 2.82e-118

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 366.47  E-value: 2.82e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   653 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnaLNELKKKTLTLTSQLADEESRVRQQHAMA 732
Cdd:TIGR01541    1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKL---------LEEAEQKALEALKKLAEATASIRAQNKRQ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   733 LATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTL 812
Cdd:TIGR01541   72 LDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLA 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   813 GASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFG 892
Cdd:TIGR01541  152 GARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSLIGGA 231

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   893 TSAGGStPSGAYSSAALSVIPNADGGvYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA 972
Cdd:TIGR01541  232 ASGGNS-SSGAMASYGAAYVPNFAGG-GYTAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVAA 309

                          330       340
                   ....*....|....*....|...
gi 940351683   973 GSGGMA---MFAPEYNIEIHNDA 992
Cdd:TIGR01541  310 GSGGLGpngMFGGETAISINNDG 332
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 229-426 9.38e-50

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 174.83  E-value: 9.38e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   229 LERTGTATHTLGLKSAAARRELGVLAGELARGN----------------FGalrGSGITLANRAGWIEQLMSPKGMMLGG 292
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQspltvllqqggqikdmFG---GIGPALKALGGYVLGLINPLTLAAAA 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   293 LAGgvaaavYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVA 372
Cdd:pfam06791   78 AAV------GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLE 151

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 940351683   373 MVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIR 426
Cdd:pfam06791  152 GVIRAAARMEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
431-1031 2.68e-38

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444092 [Multi-domain]  Cd Length: 603  Bit Score: 152.46  E-value: 2.68e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  431 QGRVADAAKIAMSAYSEEMNKRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARGRKTPWT 510
Cdd:COG5281     2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  511 VSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRN 590
Cdd:COG5281    82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  591 AALERENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG5281   162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG5281   242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLAQGGNVAG 830
Cdd:COG5281   322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  831 MTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSI--LADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAyssaa 908
Cdd:COG5281   402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIasIADALANAALASAADALGGALAGALGGLFGGGGGAAAG----- 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  909 lsvipnadGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAAGSGGMA--MFAPEYNI 986
Cdd:COG5281   477 --------AAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAAGGGGGAavVVNITTPD 548

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 940351683  987 EIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGGR 1031
Cdd:COG5281   549 AAGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAA 593
Tape_meas_lam_C pfam09718
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ...
 808-883 3.80e-23

Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.


Pssm-ID: 430770 [Multi-domain]  Cd Length: 76  Bit Score: 93.88  E-value: 3.80e-23
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683   808 GDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLG 883
Cdd:pfam09718    1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPLA 76
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 486-771 6.59e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.42  E-value: 6.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  486 REDTLDEKIATLQEKIARGRKtpwtvsssQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQ----NAALN 561
Cdd:COG1196   240 ELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERR 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  562 RDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKpktYHNDEARRLLLQYSQQQAQTEGQLAAAK 641
Cdd:COG1196   312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEEL 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  642 LSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADE 721
Cdd:COG1196   389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 940351683  722 ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKG 771
Cdd:COG1196   469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 520-823 1.52e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.26  E-value: 1.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  520 QQQLNELKEQKRQKDLLDAKAQAERnyQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENER 599
Cdd:COG1196   238 EAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  600 HKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLS---TTEKMTEAHKQLLSFQQRIADLSGKKLTADEQS 676
Cdd:COG1196   316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAElaeAEEALLEAEAELAEAEEELEELAEELLEALRAA 395

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  677 VLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHY 756
Cdd:COG1196   396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  757 QEQLEQLKR---DSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLA 823
Cdd:COG1196   476 EAALAELLEelaEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 515-807 1.75e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.79  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  515 QTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRR-NEQNAALNRDNETESLRHQREVARITAMQyadAAVRNAAL 593
Cdd:COG1196   219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLELEELELELEEAQ---AEEYELLA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  594 ERENERHKKALSQQAKKpktyhndEARRLLLQYSQQQAQTEGQLAAAK---LSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG1196   296 ELARLEQDIARLEERRR-------ELEERLEELEEELAELEEELEELEeelEELEEELEEAEEELEEAEAELAEAEEALL 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG1196   369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 940351683  751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQ 807
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 521-818 2.92e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.02  E-value: 2.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  521 QQLNELKEQKRqkdlldakaQAERnYQE--TQKRRNEQNAALNRDNE-TESLRHQREVARITAMQYADAAVRNAALEREN 597
Cdd:COG1196   200 RQLEPLERQAE---------KAER-YRElkEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAEL 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  598 ERHKKALSQQAKKpktyhNDEARRLLLQYSQQQAQTEGQLAAAKL---STTEKMTEAHKQLLSFQQRIADLSGKKLTADE 674
Cdd:COG1196   270 EELRLELEELELE-----LEEAQAEEYELLAELARLEQDIARLEErrrELEERLEELEEELAELEEELEELEEELEELEE 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  675 QSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERLKIQQ 754
Cdd:COG1196   345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  755 HYQEQLEQLK------RDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRAL 818
Cdd:COG1196   425 ELEEALAELEeeeeeeEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
PTZ00121 PTZ00121
MAEBL; Provisional
 515-795 3.62e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 3.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  515 QTEYDQQQLNELK---EQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVA-RITAMQYADAAVRN 590
Cdd:PTZ00121 1399 KAEEDKKKADELKkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKKK 1478

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  591 AALERENERHKKALSQQAKKPktyhnDEARRlllqysqqqaQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKA-----DEAKK----------AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  671 TADEQSVLAHKDEIALALQKLDISQQ---------DLQHQNALNELKKKTLTLTSQLADEESRVRQQHA-MALATMGMGD 740
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAE 1623

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 940351683  741 QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
 498-795 3.91e-05

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 47.44  E-value: 3.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   498 QEKIARGRKTPWTV-------------SSSQTEYDQQQLNELKEQKRQKDL-LDAKAQAERNYQETQKRRNEQNAALNRD 563
Cdd:pfam09731   88 QVKIPRQSGVSSEVaeeekeatkdaaeAKAQLPKSEQEKEKALEEVLKEAIsKAESATAVAKEAKDDAIQAVKAHTDSLK 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   564 NETESLRHQREVARITAMQYADAAVRNAALERENERhkkalsQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKls 643
Cdd:pfam09731  168 EASDTAEISREKATDSALQKAEALAEKLKEVINLAK------QSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQ-- 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   644 TTEKMTEAHKQLLS-----FQQRIA----DLS------GKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELK 708
Cdd:pfam09731  240 SLAKLVDQYKELVAserivFQQELVsifpDIIpvlkedNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALE 319

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   709 KKTLTLTSQlaDEESRVRQQHAMALATMGMGDQQRgryEERLKIQQHYQEQLE-QLKRDSKAKGTYGSDEYRQAEQALKG 787
Cdd:pfam09731  320 KQKEELDKL--AEELSARLEEVRAADEAQLRLEFE---REREEIRESYEEKLRtELERQAEAHEEHLKDVLVEQEIELQR 394


                   ....*...
gi 940351683   788 SLDRRLAE 795
Cdd:pfam09731  395 EFLQDIKE 402
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 486-786 4.02e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 47.66  E-value: 4.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   486 REDTLDEKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERnYQETQKRRNEQNAALNRdne 565
Cdd:TIGR00618  213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LRAQEAVLEETQERINR--- 288

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   566 teslrhQREVARITAMQYADAAVRnaalERENERHKKALSQQAKKPKTYHndeaRRLLLQYSQQQAQTEGQLAAAKLSTT 645
Cdd:TIGR00618  289 ------ARKAAPLAAHIKAVTQIE----QQAQRIHTELQSKMRSRAKLLM----KRAAHVKQQSSIEEQRRLLQTLHSQE 354

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   646 EKMTEAHKQLLSFQQRIAdlsgkKLTADEQSVLAHKDEIALALQKLDISQQDLQhqnALNELKKKTLTLTSqladEESRV 725
Cdd:TIGR00618  355 IHIRDAHEVATSIREISC-----QQHTLTQHIHTLQQQKTTLTQKLQSLCKELD---ILQREQATIDTRTS----AFRDL 422

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 940351683   726 RQQHAMALATMGMgdQQRGRYEERLKIQQHYQEQleQLKRDSKAKGTYGSDEYRQAEQALK 786
Cdd:TIGR00618  423 QGQLAHAKKQQEL--QQRYAELCAAAITCTAQCE--KLEKIHLQESAQSLKEREQQLQTKE 479
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 507-791 6.25e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.04  E-value: 6.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   507 TP-WTVS-SSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQ-- 582
Cdd:pfam17380  253 TPeYTVRyNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDrq 332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   583 ---YAD----AAVRNAALER----ENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKlstTEKMTEA 651
Cdd:pfam17380  333 aaiYAEqermAMERERELERirqeERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAAR---KVKILEE 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   652 HKQLLSFQQR--IADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQ-----NALNELKKKTLTL-----TSQLA 719
Cdd:pfam17380  410 ERQRKIQQQKveMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQverlrQQEEERKRKKLELekekrDRKRA 489

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683   720 DEESRVRQQHAMALATMGMGDQQRGR--YEERLKIQQH--YQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDR 791
Cdd:pfam17380  490 EEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKaiYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER 565
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 515-794 1.41e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 46.12  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   515 QTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALE 594
Cdd:TIGR00618  603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL 682

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   595 RENERHKKALSqqAKKPKTYHNDEARRLLLQ----YSQQQAQTEGQLAAAKlSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:TIGR00618  683 QKMQSEKEQLT--YWKEMLAQCQTLLRELEThieeYDREFNEIENASSSLG-SDLAAREDALNQSLKELMHQARTVLKAR 759

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   671 T-ADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQ------------------LADEESRVRQQHAM 731
Cdd:TIGR00618  760 TeAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdedilnlqcetLVQEEEQFLSRLEE 839

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   732 ALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGS-------DEYRQAEQALKGSLDRRLA 794
Cdd:TIGR00618  840 KSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQikiqfdgDALIKFLHEITLYANVRLA 909
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
524-724 1.83e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  524 NELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRdnetesLRHQREVARITAMQyaDAAVRNAALERENERHKKA 603
Cdd:COG4913   242 EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAA------LRLWFAQRRLELLE--AELEELRAELARLEAELER 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  604 LSQQAKKpktyHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLsGKKLTADEQSVLAHKDE 683
Cdd:COG4913   314 LEARLDA----LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAL-GLPLPASAEEFAALRAE 388

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 940351683  684 IALALQKLDISQQDLQ-----HQNALNELKKKTLTLTSQLADEESR 724
Cdd:COG4913   389 AAALLEALEEELEALEealaeAEAALRDLRRELRELEAEIASLERR 434
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 595-807 4.51e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 4.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   595 RENERHKKALSQQAKKPKTYHndearrlllQYSQQQAQTEGQLAAAKLsttekmTEAHKQLLSFQQRIADLSGKKLTADE 674
Cdd:TIGR02168  196 NELERQLKSLERQAEKAERYK---------ELKAELRELELALLVLRL------EELREELEELQEELKEAEEELEELTA 260

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   675 QSVLAHK--DEIALALQKLDISQQDLQHqnALNELKKKTLTLTSQLA---DEESRVRQQHAMALATMGMGDQQRGRYEER 749
Cdd:TIGR02168  261 ELQELEEklEELRLEVSELEEEIEELQK--ELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELESKLDELAEE 338

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 940351683   750 LKIQQHYQEQLEQLKRDSKAKGtygsDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQ 807
Cdd:TIGR02168  339 LAELEEKLEELKEELESLEAEL----EELEAELEELESRLEELEEQLETLRSKVAQLE 392
PTZ00121 PTZ00121
MAEBL; Provisional
 421-794 7.66e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 7.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  421 QLEQIRVLGEQGRVADAAKIAMSAYSEEMNKRMGDVHDNlgwierawnavGDAAKWAWDRMLDIGREDTL---DEKIATL 497
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN-----------EEIRKFEEARMAHFARRQAAikaEEARKAD 1281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  498 QEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNA---------ALNRDNETES 568
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaakaeAEAAADEAEA 1361

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  569 LRHQREVARIT---AMQYADAAVRNAALERENERHKKALSQQAKKPktyhnDEARRlllqysQQQAQTEGQLAAAKLSTT 645
Cdd:PTZ00121 1362 AEEKAEAAEKKkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA-----DELKK------AAAAKKKADEAKKKAEEK 1430

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  646 EKMTEAHKQllSFQQRIADLSGKKltADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQlADE---- 721
Cdd:PTZ00121 1431 KKADEAKKK--AEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK-ADEakka 1505

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 940351683  722 -ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLA 794
Cdd:PTZ00121 1506 aEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
PTZ00121 PTZ00121
MAEBL; Provisional
 492-793 1.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  492 EKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRH 571
Cdd:PTZ00121 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  572 QREVARITAMQYADAAVRNAALERENERHKKAlSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEA 651
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKA-EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  652 HKQLLSFQQRIADlSGKKLTADEQSVLAHKDEIALALQKL-DISQQDLQHQNALNELKKKTLTLTSqlADEESRVRQQHA 730
Cdd:PTZ00121 1590 EEARIEEVMKLYE-EEKKMKAEEAKKAEEAKIKAEELKKAeEEKKKVEQLKKKEAEEKKKAEELKK--AEEENKIKAAEE 1666

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 940351683  731 MALAtmgmgDQQRGRYEERLKIQQHYQEQLEQLKRDSKAK------GTYGSDEYRQAEQALKGSLDRRL 793
Cdd:PTZ00121 1667 AKKA-----EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeelKKKEAEEKKKAEELKKAEEENKI 1730
PTZ00121 PTZ00121
MAEBL; Provisional
 492-795 1.78e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  492 EKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRH 571
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  572 QREVARITAMQYADAA-----VRNAALERENERHKKA----LSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKL 642
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAkkaeeKKKADELKKAEELKKAeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  643 STTEKMTEAHKQLlsfQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEE 722
Cdd:PTZ00121 1604 EKKMKAEEAKKAE---EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 940351683  723 SRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 521-790 3.33e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 3.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   521 QQLNELKEQKRQKDL------LDAKAQAERNYQETQKRRNEQNAALNRD--------NETESLRH--QREVARITAMQYA 584
Cdd:TIGR02168  213 ERYKELKAELRELELallvlrLEELREELEELQEELKEAEEELEELTAElqeleeklEELRLEVSelEEEIEELQKELYA 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   585 dAAVRNAALERENERHKKALSQQAKKPKTYhnDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIAD 664
Cdd:TIGR02168  293 -LANEISRLEQQKQILRERLANLERQLEEL--EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   665 LSGKKLTADEQsVLAHKDEIALALQKldISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRG 744
Cdd:TIGR02168  370 LESRLEELEEQ-LETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 940351683   745 RYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLD 790
Cdd:TIGR02168  447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 526-766 3.81e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 3.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   526 LKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVaritamqyadaavrNAALERENERHKKALS 605
Cdd:TIGR02168  195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEEL--------------QEELKEAEEELEELTA 260

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   606 QQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMteahKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIA 685
Cdd:TIGR02168  261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEAQLEELESKLDELA 336

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683   686 LALQKLDISQQDLQHQ-----NALNELKKKTLTLTSQLAD-EESRVRQQHAMALATMGMGDQ--QRGRYEERLKIQQHYQ 757
Cdd:TIGR02168  337 EELAELEEKLEELKEElesleAELEELEAELEELESRLEElEEQLETLRSKVAQLELQIASLnnEIERLEARLERLEDRR 416


                   ....*....
gi 940351683   758 EQLEQLKRD 766
Cdd:TIGR02168  417 ERLQQEIEE 425
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 566-824 6.27e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 40.71  E-value: 6.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  566 TESLRHQREVARITAMQYADAAVRNAALERENERHKKALS--QQAKkpktyhnDEARRLLLQYSQ-QQA--QTEGQLAAA 640
Cdd:COG3096   360 TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQAL-------DVQQTRAIQYQQaVQAleKARALCGLP 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  641 KLSTT----------EKMTEAHKQLLSFQQRIADlsgkkltADeqsvlAHKDEIALALQKL-------------DISQQD 697
Cdd:COG3096   433 DLTPEnaedylaafrAKEQQATEEVLELEQKLSV-------AD-----AARRQFEKAYELVckiageversqawQTAREL 500

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683  698 LQHQNALNELKKKTLTLTSQLADEESRVRQQH-AMALATmGMGDQQRGRYEERLKIQQHYQEQLEQLKR--DSKAKGTYG 774
Cdd:COG3096   501 LRRYRSQQALAQRLQQLRAQLAELEQRLRQQQnAERLLE-EFCQRIGQQLDAAEELEELLAELEAQLEEleEQAAEAVEQ 579

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 940351683  775 SDEYRQAEQALKG---SLDRRLAEWADYNAKVD--AAQGDWTLGASRALDNFLAQ 824
Cdd:COG3096   580 RSELRQQLEQLRArikELAARAPAWLAAQDALErlREQSGEALADSQEVTAAMQQ 634
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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