Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot ...
255-966
0e+00
Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot spot proteins (RHSPs). They are associated with polymorphic subtelomeric regions in Trypanosoma. These proteins contain a P-loop (ATP/GTP-binding) motif, represented in this entry, at the C-terminal of the conserved box 1. This domain also includes the retrotransposon insertion site.
The actual alignment was detected with superfamily member TIGR01631:
Pssm-ID: 473170 Cd Length: 760 Bit Score: 611.45 E-value: 0e+00
trypanosome RHS (retrotransposon hot spot) family; This model describes full-length and ...
255-966
0e+00
trypanosome RHS (retrotransposon hot spot) family; This model describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Pssm-ID: 273724 Cd Length: 760 Bit Score: 611.45 E-value: 0e+00
Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot ...
515-812
3.25e-75
Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot spot proteins (RHSPs). They are associated with polymorphic subtelomeric regions in Trypanosoma. These proteins contain a P-loop (ATP/GTP-binding) motif, represented in this entry, at the C-terminal of the conserved box 1. This domain also includes the retrotransposon insertion site.
Pssm-ID: 462336 Cd Length: 312 Bit Score: 249.84 E-value: 3.25e-75
trypanosome RHS (retrotransposon hot spot) family; This model describes full-length and ...
255-966
0e+00
trypanosome RHS (retrotransposon hot spot) family; This model describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Pssm-ID: 273724 Cd Length: 760 Bit Score: 611.45 E-value: 0e+00
Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot ...
515-812
3.25e-75
Retrotransposon hot spot protein, P-loop domain; Members of this entry are retrotransposon hot spot proteins (RHSPs). They are associated with polymorphic subtelomeric regions in Trypanosoma. These proteins contain a P-loop (ATP/GTP-binding) motif, represented in this entry, at the C-terminal of the conserved box 1. This domain also includes the retrotransposon insertion site.
Pssm-ID: 462336 Cd Length: 312 Bit Score: 249.84 E-value: 3.25e-75
Retrotransposon hot spot proteins N-terminal; Members of this entry are retrotransposon hot ...
398-501
4.40e-32
Retrotransposon hot spot proteins N-terminal; Members of this entry are retrotransposon hot spot (RHS) proteins. They are associated with polymorphic subtelomeric regions in Trypanosoma. These proteins contain a conserved box 1 with a P-loop motif and a retrotransposon insertion site at the C-terminal (pfam07999). This domain represents the N-terminal region of the conserved box 1 from RHSPs.
Pssm-ID: 466594 [Multi-domain] Cd Length: 127 Bit Score: 121.28 E-value: 4.40e-32
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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