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Conserved domains on  [gi|119579500|gb|EAW59096|]
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sushi domain containing 1, isoform CRA_d, partial [Homo sapiens]

Protein Classification

calcium-binding EGF-like domain-containing protein( domain architecture ID 11255961)

calcium-binding epidermal growth factor (EGF)-like domain-containing protein may play a crucial role in numerous protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EGF_CA smart00179
Calcium-binding EGF-like domain;
35-66 7.29e-12

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 59.95  E-value: 7.29e-12
                           10        20        30
                   ....*....|....*....|....*....|..
gi 119579500    35 DIDECEVSGLCRHGGRCVNTHGSFECYCMDGY 66
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 89-145 7.62e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 46.30  E-value: 7.62e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 119579500  89 CGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVsSCTGLGTWESPKLHCQ 145
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYTLVGSSTI-TCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 149-204 1.92e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.15  E-value: 1.92e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500 149 CGNPPEMRHAILVGNHSS-RLGGVARYVCQEGFEsPGGKITSVCTEKGTWRESTLTC 204
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYT-LVGSSTITCTENGGWSPPPPTC 56
 
Name Accession Description Interval E-value
EGF_CA smart00179
Calcium-binding EGF-like domain;
35-66 7.29e-12

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 59.95  E-value: 7.29e-12
                           10        20        30
                   ....*....|....*....|....*....|..
gi 119579500    35 DIDECEVSGLCRHGGRCVNTHGSFECYCMDGY 66
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 35-70 4.06e-11

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 58.03  E-value: 4.06e-11
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 119579500  35 DIDECEVSGLCRHGGRCVNTHGSFECYCMDGYLPRN 70
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 89-145 7.62e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 46.30  E-value: 7.62e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 119579500  89 CGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVsSCTGLGTWESPKLHCQ 145
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYTLVGSSTI-TCTENGGWSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
89-144 1.53e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.57  E-value: 1.53e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500   89 CGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVsSCTGLGTWESPKLHC 144
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEyNYGASVSYECDPGYRLVGSPTI-TCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 89-144 1.88e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.21  E-value: 1.88e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500    89 CGTPPEVPDGYIIG-NYTSSLGSQVRYACREGFFSVPEDTvSSCTGLGTWESPKLHC 144
Cdd:smart00032   1 CPPPPDIENGTVTSsSGTYSYGDTVTYSCDPGYTLIGSST-ITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 149-204 1.92e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.15  E-value: 1.92e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500 149 CGNPPEMRHAILVGNHSS-RLGGVARYVCQEGFEsPGGKITSVCTEKGTWRESTLTC 204
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYT-LVGSSTITCTENGGWSPPPPTC 56
EGF_CA pfam07645
Calcium-binding EGF domain;
35-65 3.34e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 43.77  E-value: 3.34e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 119579500   35 DIDECEVSG-LCRHGGRCVNTHGSFECYCMDG 65
Cdd:pfam07645   1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 56-204 9.50e-06

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 47.73  E-value: 9.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119579500  56 GSFECYCMDGYlprNGPEPFHPttDATSCTEIDCGTPPEVPDGYIIGN---YTSslGSQVRYACREGfFSVPEDTVSSCT 132
Cdd:PHA02927 120 GESKSYCELGS---TGSMVWNP--EAPICESVKCQSPPSISNGRHNGYedfYTD--GSVVTYSCNSG-YSLIGNSGVLCS 191

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119579500 133 GlGTWESPKLhCQEINCGNPPEMRHAILVG-NHSSRLGGVARYVCQEGFESPGGKiTSVCTEKGTWRESTLTC 204
Cdd:PHA02927 192 G-GEWSDPPT-CQIVKCPHPTISNGYLSSGfKRSYSYNDNVDFKCKYGYKLSGSS-SSTCSPGNTWQPELPKC 261
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 149-204 2.06e-05

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 42.51  E-value: 2.06e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500   149 CGNPPEMRHA-ILVGNHSSRLGGVARYVCQEGFESPGGKiTSVCTEKGTWRESTLTC 204
Cdd:smart00032   1 CPPPPDIENGtVTSSSGTYSYGDTVTYSCDPGYTLIGSS-TITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
149-204 1.69e-04

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 39.79  E-value: 1.69e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500  149 CGNPPEMRHAILVGNHSS-RLGGVARYVCQEGFESPGGkITSVCTEKGTWRESTLTC 204
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEyNYGASVSYECDPGYRLVGS-PTITCQEDGTWSPPFPEC 56
 
Name Accession Description Interval E-value
EGF_CA smart00179
Calcium-binding EGF-like domain;
35-66 7.29e-12

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 59.95  E-value: 7.29e-12
                           10        20        30
                   ....*....|....*....|....*....|..
gi 119579500    35 DIDECEVSGLCRHGGRCVNTHGSFECYCMDGY 66
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 35-70 4.06e-11

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 58.03  E-value: 4.06e-11
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 119579500  35 DIDECEVSGLCRHGGRCVNTHGSFECYCMDGYLPRN 70
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRN 36
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
 38-66 5.22e-07

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 46.32  E-value: 5.22e-07
                         10        20
                 ....*....|....*....|....*....
gi 119579500  38 ECEVSGLCRHGGRCVNTHGSFECYCMDGY 66
Cdd:cd00053    1 ECAASNPCSNGGTCVNTPGSYRCVCPPGY 29
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 89-145 7.62e-07

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 46.30  E-value: 7.62e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 119579500  89 CGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVsSCTGLGTWESPKLHCQ 145
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYTLVGSSTI-TCTENGGWSPPPPTCE 57
Sushi pfam00084
Sushi repeat (SCR repeat);
89-144 1.53e-06

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 45.57  E-value: 1.53e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500   89 CGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVsSCTGLGTWESPKLHC 144
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEyNYGASVSYECDPGYRLVGSPTI-TCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 89-144 1.88e-06

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 45.21  E-value: 1.88e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500    89 CGTPPEVPDGYIIG-NYTSSLGSQVRYACREGFFSVPEDTvSSCTGLGTWESPKLHC 144
Cdd:smart00032   1 CPPPPDIENGTVTSsSGTYSYGDTVTYSCDPGYTLIGSST-ITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 149-204 1.92e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 45.15  E-value: 1.92e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500 149 CGNPPEMRHAILVGNHSS-RLGGVARYVCQEGFEsPGGKITSVCTEKGTWRESTLTC 204
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSySYGSTVTYSCNEGYT-LVGSSTITCTENGGWSPPPPTC 56
EGF_CA pfam07645
Calcium-binding EGF domain;
35-65 3.34e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 43.77  E-value: 3.34e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 119579500   35 DIDECEVSG-LCRHGGRCVNTHGSFECYCMDG 65
Cdd:pfam07645   1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 56-204 9.50e-06

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 47.73  E-value: 9.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119579500  56 GSFECYCMDGYlprNGPEPFHPttDATSCTEIDCGTPPEVPDGYIIGN---YTSslGSQVRYACREGfFSVPEDTVSSCT 132
Cdd:PHA02927 120 GESKSYCELGS---TGSMVWNP--EAPICESVKCQSPPSISNGRHNGYedfYTD--GSVVTYSCNSG-YSLIGNSGVLCS 191

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119579500 133 GlGTWESPKLhCQEINCGNPPEMRHAILVG-NHSSRLGGVARYVCQEGFESPGGKiTSVCTEKGTWRESTLTC 204
Cdd:PHA02927 192 G-GEWSDPPT-CQIVKCPHPTISNGYLSSGfKRSYSYNDNVDFKCKYGYKLSGSS-SSTCSPGNTWQPELPKC 261
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 149-204 2.06e-05

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 42.51  E-value: 2.06e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500   149 CGNPPEMRHA-ILVGNHSSRLGGVARYVCQEGFESPGGKiTSVCTEKGTWRESTLTC 204
Cdd:smart00032   1 CPPPPDIENGtVTSSSGTYSYGDTVTYSCDPGYTLIGSS-TITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
149-204 1.69e-04

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 39.79  E-value: 1.69e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119579500  149 CGNPPEMRHAILVGNHSS-RLGGVARYVCQEGFESPGGkITSVCTEKGTWRESTLTC 204
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEyNYGASVSYECDPGYRLVGS-PTITCQEDGTWSPPFPEC 56
EGF smart00181
Epidermal growth factor-like domain;
38-66 5.45e-04

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 37.88  E-value: 5.45e-04
                           10        20
                   ....*....|....*....|....*....
gi 119579500    38 ECEVSGLCRHGgRCVNTHGSFECYCMDGY 66
Cdd:smart00181   1 ECASGGPCSNG-TCINTPGSYTCSCPPGY 28
PHA02639 PHA02639
EEV host range protein; Provisional
 78-204 1.84e-03

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 40.80  E-value: 1.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119579500  78 TTDATSCTEIDCGTPPEVPDGYIIGNYTS-SLGSQVRYACREGF---FSVPEDTVSSCTGLGTWESPKLHCQEINCgNPP 153
Cdd:PHA02639  74 SNKAPFCMLKECNDPPSIINGKIYNKREMyKVGDEIYYVCNEHKgvqYSLVGNEKITCIQDKSWKPDPPICKMINC-RFP 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 119579500 154 EMRHAILVG-------NHSSRLGgvarYVCQEGFESPGGKItSVCTEKGTWRESTLTC 204
Cdd:PHA02639 153 ALQNGYINGipsnkkfYYKTRVG----FSCKSGFDLVGEKY-STCNINATWFPSIPTC 205
PHA02817 PHA02817
EEV Host range protein; Provisional
 82-197 5.15e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 38.77  E-value: 5.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119579500  82 TSCTEIDCGTPPEVPDGYIIGNYTS-SLGSQVRYACREGFFSVPEDTVSS----CTGLGTWESPKLHCQEINCgNPPEMR 156
Cdd:PHA02817  17 SLCDLNKCCYPPSIKNGYIYNKKTEyNIGSNVTFFCGNNTRGVRYTLVGEkniiCEKDGKWNKEFPVCKIIRC-RFPALQ 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 119579500 157 HAILVGNHSSR---LGGVARYVCQEGFESPGGKItSVCTEKGTW 197
Cdd:PHA02817  96 NGFVNGIPDSKkfyYESEVSFSCKPGFVLIGTKY-SVCGINSSW 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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