|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-1018 |
1.78e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 1.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 289 LEEQDHLLEDYQKKKEdftmQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTAD 368
Cdd:TIGR02168 205 LERQAEKAERYKELKA----ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 369 KLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfetdivqrmeQETQRKLEQLRAE 448
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL---------------DELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 449 LDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEEL 528
Cdd:TIGR02168 346 LEEL--KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 529 GLILE-----EKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA 603
Cdd:TIGR02168 424 EELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 604 EvTNYKIKLEMLEKEKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDN---------LGIH 674
Cdd:TIGR02168 504 F-SEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNelgrvtflpLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 675 YKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-------------------ILEISKLKDLQQSLV------------- 722
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 723 NSKSEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDM 802
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEE---LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 803 LKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAC 882
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 883 LLKVKDDLEDSKNKQELEYKSkLKALNEElhLQRINPTTVKMKSSVFDEDktfvaetlEMGEVVEKDTTELMEKLEVTKR 962
Cdd:TIGR02168 819 AANLRERLESLERRIAATERR-LEDLEEQ--IEELSEDIESLAAEIEELE--------ELIEELESELEALLNERASLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 119597273 963 EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRA 1018
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
219-912 |
2.09e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 219 ITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLED 298
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 299 YQKKKEDFTMQISFLQEKIkvyemEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 378
Cdd:TIGR02168 314 LERQLEELEAQLEELESKL-----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 379 VQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH----KDSQFETDIVQRMEQETQRKLEQLRAELDEMYG 454
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 455 ------QQIVQMKQEL--IRQHMAQMEEMKTRHKGE-------MENALRSYSNITVNEDQIK----------------LM 503
Cdd:TIGR02168 469 eleeaeQALDAAERELaqLQARLDSLERLQENLEGFsegvkalLKNQSGLSGILGVLSELISvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 504 NVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQrqleDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLST---- 579
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT----EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 580 ---VEDLKAEIVSASESRKELEL-------------------KHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 637
Cdd:TIGR02168 625 vlvVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 638 RTQLLfSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK------QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 711
Cdd:TIGR02168 704 RKELE-ELEEELEQLRKELE-ELSRQISALRKDLARLEAeveqleERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 712 SKLKDLQQSlVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 791
Cdd:TIGR02168 782 AEIEELEAQ-IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 792 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 871
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 119597273 872 NYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEEL 912
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
185-802 |
2.92e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 2.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 185 ELNRELEEMRVTYGtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLR 264
Cdd:COG1196 217 ELKEELKELEAELL---LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 265 NSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKvensnKEEIQEKETIIE 344
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-----EAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 345 ELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDs 424
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 425 qfetdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMN 504
Cdd:COG1196 448 -------AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 505 VAINELNIKLQDTNSQKEKLKEELGLILEEK-CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 583
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 584 KAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRIN 663
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 664 IEKLKDNLGIHYKQQIDGLQNEMSQKIEtmqfekdnlitkQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL 743
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERE------------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119597273 744 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKE----------NDLQEKFAQLEAENSILKDEKKTLEDM 802
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
172-896 |
5.33e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 5.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 172 MESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 251
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 252 IQFQQLQASetlrnstHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENS 331
Cdd:TIGR02168 351 EELESLEAE-------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 332 NKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQK----------ERQ 401
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARldslerlqenLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 402 SSEEIKQLM-------GTVEELQKRNHKDSQFETDI-----------------VQRMEQETQRKLEQLRA---ELDEMYG 454
Cdd:TIGR02168 504 FSEGVKALLknqsglsGILGVLSELISVDEGYEAAIeaalggrlqavvvenlnAAKKAIAFLKQNELGRVtflPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 455 QQI------VQMKQELIRQHMAQMEEMKTRHKGEMENAL--------------------RSYSNITVNEDQIK---LMNV 505
Cdd:TIGR02168 584 TEIqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldnalelakklrPGYRIVTLDGDLVRpggVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 506 AINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKA 585
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 586 EIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQlLFSHEEELSKLKEDLeiehrinie 665
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-LEAQIEQLKEE-LKALREALDELRAEL--------- 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 666 klkDNLGIHYKQQIDGLQNEMSQKIETmqfekdnliTKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILrq 745
Cdd:TIGR02168 813 ---TLLNEEAANLRERLESLERRIAAT---------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-- 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 746 eEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMlkihtpvsQEERLIFLDSIKSKS 825
Cdd:TIGR02168 879 -LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--------EVRIDNLQERLSEEY 949
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119597273 826 KDS--VWEKEIEILIEENEDLKQQCIQLNEEIEkqrntfSFAEKNFEV--NYQELQEEYACLLKVKDDLEDSKNK 896
Cdd:TIGR02168 950 SLTleEAEALENKIEDDEEEARRRLKRLENKIK------ELGPVNLAAieEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
168-784 |
8.44e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 8.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 168 HLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQS 247
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE--------AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 248 QKLQIQFQQLQASETlrnsthsSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 327
Cdd:COG1196 305 ARLEERRRELEERLE-------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 328 VE--NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE 405
Cdd:COG1196 378 EEelEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 406 IKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMK-----QELIRQHMAQMEEMKTRHK 480
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 481 GEMENALRSYSNITVNEDQIKLMNvAINELNIK-------LQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSR 553
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAA-AIEYLKAAkagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 554 EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykIKLEMLEKEKNAVLDRMAESQEAE 633
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR-----RELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 634 LERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISK 713
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119597273 714 LKDLQQSL--VNSKSEEmtlQINELQKEIEILrqeEKEKGTLEQEVQELQLKTELLEKQMKEKendLQEKFAQ 784
Cdd:COG1196 772 LEREIEALgpVNLLAIE---EYEELEERYDFL---SEQREDLEEARETLEEAIEEIDRETRER---FLETFDA 835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
169-980 |
7.75e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 7.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 169 LEMMESELAGKQHEIEELNRELEEMRVtygteglqQLQEFEAAIKQRDGIITQLtanlqqARREKDETMREFLELTEQSQ 248
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTE--------EISELEKRLEEIEQLLEEL------NKKIKDLGEEEQLRVKEKIG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 249 KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI--KVYEMEQDK 326
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedLRAELEEVD 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 327 KVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEI 406
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 407 KQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELD-----EMYGQQIVQMKQELIRQ---HMAQMEEMKTR 478
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARaseerVRGGRAVEEVLKASIQGvhgTVAQLGSVGER 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 479 HKGEMENALRSYSNITVNED------------QIKLMNVAINELNiKLQDTNSQKEKLKEE------LGLILEEK---CA 537
Cdd:TIGR02169 537 YATAIEVAAGNRLNNVVVEDdavakeaiellkRRKAGRATFLPLN-KMRDERRDLSILSEDgvigfaVDLVEFDPkyePA 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 538 LQRQLED--LVEELSFSREQIQRARQTIAEQEskLNEAHKSLS--TVEDLKAEIVSASESRKELELKHEaevtnykikLE 613
Cdd:TIGR02169 616 FKYVFGDtlVVEDIEAARRLMGKYRMVTLEGE--LFEKSGAMTggSRAPRGGILFSRSEPAELQRLRER---------LE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 614 MLEKEKNAVLDRMAEsQEAELERLRTQLLFSHEE--ELSKLKEDLEIEHRINIEKLKdnlgihykqQIDGLQNEMSQKIE 691
Cdd:TIGR02169 685 GLKRELSSLQSELRR-IENRLDELSQELSDASRKigEIEKEIEQLEQEEEKLKERLE---------ELEEDLSSLEQEIE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 692 TMQFEKDNLITKQNQLILEISKLK----DLQQSLVNSKSEEMTLQINELQKEIeilRQEEKEKGTLEQEVQELQLKTELL 767
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEealnDLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKEYL 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 768 EKQMKEKENDLQEkfaqleaensiLKDEKKTLEDmlkihtpvSQEERLIFLDSIKSKSKdsvwekeieILIEENEDLKQQ 847
Cdd:TIGR02169 832 EKEIQELQEQRID-----------LKEQIKSIEK--------EIENLNGKKEELEEELE---------ELEAALRDLESR 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 848 CIQLNEEIEKQRNTFSFAEKnfevNYQELQEEYacllkvkddleDSKNKQELEYKSKLKALNEEL-HLQRINPTTVKMKS 926
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELER----KIEELEAQI-----------EKKRKRLSELKAKLEALEEELsEIEDPKGEDEEIPE 948
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119597273 927 SVFDEDKtfVAETLE--------MGEV----------VEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQ 980
Cdd:TIGR02169 949 EELSLED--VQAELQrveeeiraLEPVnmlaiqeyeeVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
167-813 |
1.35e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.18 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 167 THLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQ 246
Cdd:TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 247 SQKLQIQFQQLQAsetlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDK 326
Cdd:TIGR02169 366 LEDLRAELEEVDK-------EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 327 --KVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSE 404
Cdd:TIGR02169 439 leEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 405 EIKQLMGTVEELqkrnhkdSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELI-RQHMAQMEEMKTRHKGEM 483
Cdd:TIGR02169 519 SIQGVHGTVAQL-------GSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgRATFLPLNKMRDERRDLS 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 484 ENALRSYSNITVN----EDQIKLMNVAINELNIKLQDTNSQKE------------KLKEELGLI---------------- 531
Cdd:TIGR02169 592 ILSEDGVIGFAVDlvefDPKYEPAFKYVFGDTLVVEDIEAARRlmgkyrmvtlegELFEKSGAMtggsraprggilfsrs 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 532 -LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTV----EDLKAEIVSASESRKELELKHEA--- 603
Cdd:TIGR02169 672 ePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIekeiEQLEQEEEKLKERLEELEEDLSSleq 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 604 EVTNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDnlgihykqqIDGLQ 683
Cdd:TIGR02169 752 EIENVKSELKELEARIEE-LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---------IEQKL 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 684 NEMSQKIETMQFEKDNLITKQNQLILEISKLKDlQQSLVNSKSEEMTLQINELQKEieiLRQEEKEKGTLEQEVQELQLK 763
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-EIENLNGKKEELEEELEELEAA---LRDLESRLGDLKKERDELEAQ 897
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 119597273 764 TELLEK---QMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEE 813
Cdd:TIGR02169 898 LRELERkieELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
333-896 |
1.09e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 333 KEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGT 412
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 413 VEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEMENALRSYSN 492
Cdd:COG1196 325 LAELEEELEELEE-ELEELEEELEEAEEELEEAEAELAE---------AEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 493 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNE 572
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 573 AHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNA--------VLDRMAESQEAELERLRTQLLFS 644
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 645 HEEELSKLKEDLEIE----------HRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKL 714
Cdd:COG1196 555 DDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 715 KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 794
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 795 EKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENED-LKQQCIQLNEEIEkqrntfsfaekNFE-VN 872
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIE-----------ALGpVN 783
|
570 580 590
....*....|....*....|....*....|
gi 119597273 873 ------YQELQEEYACLLKVKDDLEDSKNK 896
Cdd:COG1196 784 llaieeYEELEERYDFLSEQREDLEEARET 813
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
170-1022 |
1.45e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.30 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 170 EMMESELAGKQHEIEELNRELEEmrvtygTEGLQQLQEFEAaikqRDGIItQLTANLQQARREKDeTMREFLELTEQSQ- 248
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 249 ----KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekiKVYEMEQ 324
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGK------------KIYEHDS 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 325 DKKVENSNKEEIQEKetIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQE-----IKNMKLELTNSKQKE 399
Cdd:pfam15921 210 MSTMHFRSLGSAISK--ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDrieqlISEHEVEITGLTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 400 RQSSEEIKQLMGTVEELQKRnhkdSQFETDIVQRMEQETQRKLEQLRAELDE---MYGQQIVQMKQELIRQHMAQMEEMK 476
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQ----ARNQNSMYMRQLSDLESTVSQLRSELREakrMYEDKIEELEKQLVLANSELTEART 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 477 TRHK-----GEMENALRSY-SNITVNEDQIKLMNvainELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELS 550
Cdd:pfam15921 364 ERDQfsqesGNLDDQLQKLlADLHKREKELSLEK----EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 551 fSREQIQRARQTIAEQESklneaHKSLSTVEDLKAEIvsasESRKELELKHEAEVTNYKIKLEMLEKeknAVLDRMAESQ 630
Cdd:pfam15921 440 -SECQGQMERQMAAIQGK-----NESLEKVSSLTAQL----ESTKEMLRKVVEELTAKKMTLESSER---TVSDLTASLQ 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 631 EAElerlrtQLLFSHEEELSKLKEDLEIEhrinIEKLKdnlgiHYKQQIDGLQNemsqkietmqfekdnlitkqnqlile 710
Cdd:pfam15921 507 EKE------RAIEATNAEITKLRSRVDLK----LQELQ-----HLKNEGDHLRN-------------------------- 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 711 isklkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEK----GTLEQEVQELQLKTELLEKQMKEKENDLQEKfaqle 786
Cdd:pfam15921 546 -----------VQTECEALKLQMAEKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEF----- 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 787 aenSILKDEKKTleDMLKIHTPVSQEErlifLDSIKSKSKDSvwekeieILIEENEDLKQQCIQLNEEIEKQRNTFSFAE 866
Cdd:pfam15921 610 ---KILKDKKDA--KIRELEARVSDLE----LEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKTSRNELNSLS 673
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 867 KNFEVNYQELQEEyacllkvKDDLEDSKNKQELEYKSKLKALNEELH-LQRINPTTVKMKSSVFDEDKTFVAETLEMG-- 943
Cdd:pfam15921 674 EDYEVLKRNFRNK-------SEEMETTTNKLKMQLKSAQSELEQTRNtLKSMEGSDGHAMKVAMGMQKQITAKRGQIDal 746
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 944 ----EVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEK-------EQVSLRCRELEII 1012
Cdd:pfam15921 747 qskiQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanmevalDKASLQFAECQDI 826
|
890
....*....|
gi 119597273 1013 INHNRAENVQ 1022
Cdd:pfam15921 827 IQRQEQESVR 836
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
207-1000 |
5.53e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 5.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 207 EFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthsSTAADLLQAKQQILTHQ 286
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL------KEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 287 QQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTT 366
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEK----EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 367 ADKLLGELQ--EQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQ 444
Cdd:pfam02463 309 KVDDEEKLKesEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 445 LRAELDEMYGQQIVQMKQEliRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKL 524
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKE--AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 525 KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAE 604
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 605 VTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEE----LSKLKEDLEIEHRINIEKLKDNLGIHYKQQID 680
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLplksIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 681 GLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQEL 760
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 761 QLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSKDSVWEKEIEILIEE 840
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRV-QEAQDKINEELKLLKQKIDEE-----EEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 841 NEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEyacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPT 920
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE-----EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 921 TVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKE 1000
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
178-577 |
6.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 6.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 178 GKQHEIEELNRELEEMrvtygtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQL 257
Cdd:TIGR02168 674 ERRREIEELEEKIEEL--------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 258 QAsetlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisfLQEKIkvyemEQDKKVENSNKEEIQ 337
Cdd:TIGR02168 746 EE-------RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-------LEAQI-----EQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 338 EKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQL----MGTV 413
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnerASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 414 EELQKRNHKDSQFETDIvQRMEQEtQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMKT-RHKGEMENALRSYSN 492
Cdd:TIGR02168 887 EALALLRSELEELSEEL-RELESK-RSELRRELEELREKLAQ--LELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENK 962
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 493 ITVN----EDQIKLMNVAINEL-NIKLqDTNSQKEKLKEELGLILEEKCALQR---QLEDLVEELsfSREQIQRARQTIA 564
Cdd:TIGR02168 963 IEDDeeeaRRRLKRLENKIKELgPVNL-AAIEEYEELKERYDFLTAQKEDLTEakeTLEEAIEEI--DREARERFKDTFD 1039
|
410
....*....|...
gi 119597273 565 EQESKLNEAHKSL 577
Cdd:TIGR02168 1040 QVNENFQRVFPKL 1052
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
242-801 |
6.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 242 ELTEQSQKLQIQ------FQQLQASETLRnsthsstaaDLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE 315
Cdd:COG1196 197 ELERQLEPLERQaekaerYRELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 316 KIKVYEMEQDKKvensnKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNS 395
Cdd:COG1196 268 ELEELRLELEEL-----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 396 KQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqivqmkqeliRQHMAQMEEM 475
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--------------AAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 476 KTRHKGEMENAlrsysnitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELglilEEKCALQRQLEDLVEELSFSREQ 555
Cdd:COG1196 409 EEALLERLERL----------EEELEELEEALAELEEEEEEEEEALEEAAEEE----AELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 556 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKEL----------------ELKHEAEVTNYKIKLEM----- 614
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavavligvEAAYEAALEAALAAALQnivve 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 615 ----------LEKEKNA------VLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRI-------NIEKLKDNL 671
Cdd:COG1196 555 ddevaaaaieYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgdtllgrTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 672 GIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKG 751
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 119597273 752 TLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLED 801
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
272-657 |
1.18e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 272 AADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVE--NSNKEEIQEKETIIEELNTK 349
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriAQLSKELTELEAEIEELEER 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 350 IIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfeTD 429
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL-------ED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 430 IVQRMEQETQRkLEQLRAELDEMygqqivqmkQELIRQHmaqmeemktrhkgemenalrsysnitvnEDQIKLMNVAINE 509
Cdd:TIGR02168 843 LEEQIEELSED-IESLAAEIEEL---------EELIEEL----------------------------ESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 510 LNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKslstvedLKAEIVs 589
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS-------LTLEEA- 956
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119597273 590 asesrKELELKHEAEVTNYKIKLEMLEKEKNAV----LDRMAESQEAElERLRTqlLFSHEEELSKLKEDLE 657
Cdd:TIGR02168 957 -----EALENKIEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEELK-ERYDF--LTAQKEDLTEAKETLE 1020
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
173-804 |
4.15e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 173 ESELAGKQHEIEELNRELEEMR--VTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKL 250
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELEneLNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 251 QIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVEN 330
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 331 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLM 410
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 411 GTVEELQKrnhkdsqfETDIVQRMEQETQRKLEQLRAELDEMyGQQIVQMKQELIRQH--MAQMEEMKTRHKGEMENALR 488
Cdd:TIGR04523 391 SQINDLES--------KIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNNseIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 489 SysnITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQES 568
Cdd:TIGR04523 462 T---RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 569 KLNeahkslstveDLKAEIVSASESRKELELkhEAEVTNYKIKLEMLEKEKNAVLDRMAESQEaELERLRTQLLFSHEEE 648
Cdd:TIGR04523 539 KIS----------DLEDELNKDDFELKKENL--EKEIDEKNKEIEELKQTQKSLKKKQEEKQE-LIDQKEKEKKDLIKEI 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 649 LSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLqqslvnsksee 728
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTK----------- 674
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119597273 729 mtlqineLQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKqmkekendLQEKFAQLEAENSILKDEKKTLEDMLK 804
Cdd:TIGR04523 675 -------IDDIIELMKDWLKELSLHYKKYITRMIRIKDLPK--------LEEKYKEIEKELKKLDEFSKELENIIK 735
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
507-1012 |
8.21e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 8.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 507 INELNIKLQDTNSQKEKL---KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 583
Cdd:PRK03918 209 INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 584 KAEIVSASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRM--AESQEAELERLRtQLLFSHEEELSKLKEDLEIEHR 661
Cdd:PRK03918 289 KEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIkeLEEKEERLEELK-KKLKELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 662 I-----NIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTL--QIN 734
Cdd:PRK03918 367 AkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 735 ELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqEKFAQLEAENSILkDEKKTLEDMLKIHTPVSQEER 814
Cdd:PRK03918 447 EEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 815 LIFLDSIKSKSkdsvwekeieilieenEDLKQQCIQLNEEIEKQrNTFSFAEKNFEVNYQELQEEYACLLK------VKD 888
Cdd:PRK03918 524 AEEYEKLKEKL----------------IKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKeleelgFES 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 889 DLEDSKNKQELE--YKSKLKALNEELHLQRINPTTVKMKSSVfDEDKTFVAETLEMGEVVEKDTTELM-----EKLEVTK 961
Cdd:PRK03918 587 VEELEERLKELEpfYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAETEKRLEELRKELEELEkkyseEEYEELR 665
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 119597273 962 REKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEII 1012
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
437-787 |
1.33e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 437 ETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEemKTRHKGEMENALRSysnitvnedqiKLMNVAINELNIKLQ 515
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENiERLDLIIDEKRQQLERLR--REREKAERYQALLK-----------EKREYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 516 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsrEQIQRARQTIAEQESKL--NEAHKSLSTVEDLKAEIVSA--S 591
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLgeEEQLRVKEKIGELEAEIASLerS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 592 ESRKELELKH-EAEVTNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLfSHEEELSKLK---EDLEIEHRINIEKL 667
Cdd:TIGR02169 310 IAEKERELEDaEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYA-ELKEELEDLRaelEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 668 KDnlgihYKQQIDGLQNEMsqkiETMQFEKDNLITKQNQLILEIS----KLKDLQQSLVNSKSEEMTLQInELQKEIEIL 743
Cdd:TIGR02169 388 KD-----YREKLEKLKREI----NELKRELDRLQEELQRLSEELAdlnaAIAGIEAKINELEEEKEDKAL-EIKKQEWKL 457
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 119597273 744 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEA 787
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
565-898 |
4.30e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 4.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 565 EQESKLNEAHKSLSTVEDLKAEIvsasesRKELE-LKHEAEVTN-YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL- 641
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNEL------ERQLKsLERQAEKAErYKELKAELRELELALLVLRLEELREELEELQEELk 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 642 -----LFSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI--- 711
Cdd:TIGR02168 250 eaeeeLEELTAELQELEEKLE-ELRLEVSELEEEIEELQKelYALANEISRLEQQKQILRERLANLERQLEELEAQLeel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 712 -SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEKgtlEQEVQELQLKTELLEKQM---KEKENDLQEKFAQLEA 787
Cdd:TIGR02168 329 eSKLDELAEEL-----AELEEKLEELKEELESLEAELEEL---EAELEELESRLEELEEQLetlRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 788 ENSILKDEKKTLEDMLKIhtpvSQEERLIFLDSIKSKSKDSVwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEK 867
Cdd:TIGR02168 401 EIERLEARLERLEDRRER----LQQEIEELLKKLEEAELKEL-QAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350
....*....|....*....|....*....|.
gi 119597273 868 NFEVNYQELQEEYACLLKVKDDLEDSKNKQE 898
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-786 |
5.97e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 167 THLEMMESELAGKQHEIEELNRELEEmrvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQ 246
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEE----------AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 247 SQKLQIQFQQLQASETL------RNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQK----------------KKE 304
Cdd:TIGR02168 477 LDAAERELAQLQARLDSlerlqeNLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvveNLN 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 305 DFTMQISFLQEKIK------VYEMEQDKKVENSNKEEIQEKETIIEELNT--KIIEEEKKTLE-------LKDKLTTADK 369
Cdd:TIGR02168 557 AAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvKFDPKLRKALSyllggvlVVDDLDNALE 636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 370 LLGELQEQ--IVQKNQEIKNMKLELTNSKQKERQS----SEEIKQLMGTVEELQKRNHkdsqfetdivqrmeqETQRKLE 443
Cdd:TIGR02168 637 LAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSilerRREIEELEEKIEELEEKIA---------------ELEKALA 701
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 444 QLRAELDEMygqqivqmkQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEK 523
Cdd:TIGR02168 702 ELRKELEEL---------EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 524 LKEELGLILEEKCALQRQLEDLVEELSFSREQIQRAR-------QTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKE 596
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRaeltllnEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 597 LELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAelerlrtqlLFSHEEELSKLKEDLEiEHRINIEKLKDNLgihyk 676
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEA---------LALLRSELEELSEELR-ELESKRSELRREL----- 917
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 677 QQIDGLQNEMSQKIETMQFEKDNLITKqnqlileISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKG----T 752
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQER-------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlA 990
|
650 660 670
....*....|....*....|....*....|....
gi 119597273 753 LEQEVQELQLKTELLEKQMkekeNDLQEKFAQLE 786
Cdd:TIGR02168 991 AIEEYEELKERYDFLTAQK----EDLTEAKETLE 1020
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
163-822 |
1.17e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.90 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 163 QDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgtEGLQQLQEFEAAIKQRDGIITQLTANLQQAR---------REK 233
Cdd:TIGR00618 208 LCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH--AYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeavleetQER 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 234 DETMREFLELTEQS-------QKLQIQFQQLQASETLRNSTHSSTAAdlLQAKQQILTHQQQLEEQDHLLEDYQKKKEDf 306
Cdd:TIGR00618 286 INRARKAAPLAAHIkavtqieQQAQRIHTELQSKMRSRAKLLMKRAA--HVKQQSSIEEQRRLLQTLHSQEIHIRDAHE- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 307 tMQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTL-------ELKDKLTTADKLLGELQEQIV 379
Cdd:TIGR00618 363 -VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDtrtsafrDLQGQLAHAKKQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 380 QKNQEIKNMKLELTNSK---QKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMY--- 453
Cdd:TIGR00618 442 LCAAAITCTAQCEKLEKihlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQdid 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 454 --GQQIVQMKQELIRQHMAQMEEMKTRHKG--EMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELG 529
Cdd:TIGR00618 522 npGPLTRRMQRGEQTYAQLETSEEDVYHQLtsERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 530 LILEEK----CALQRQLEDLVEELSfsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEV 605
Cdd:TIGR00618 602 KLSEAEdmlaCEQHALLRKLQPEQD---LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 606 TNYKIKLEMLEKEKNAVLDRMAESQEAelerlrTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHyKQQIDGLQNE 685
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWKEMLAQCQTL------LRELETHIEEYDREFNEIENASSSLGSDLAAREDAL-NQSLKELMHQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 686 MSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTE 765
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 119597273 766 LLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTpvsQEERLIFLDSIK 822
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ---LSDKLNGINQIK 885
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
182-896 |
1.46e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 182 EIEELNRELEEMRVTYGTEGLQQLQEFEAAiKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQiqfqQLQASE 261
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEA-RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE----EKKKAD 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 262 TLRNSTHSSTAADllQAKQQILTHQQQLEEQDHLLEDYQKKKEdftmqISFLQEKIKVYEMEQDKKVENSNKEEIQEKET 341
Cdd:PTZ00121 1306 EAKKKAEEAKKAD--EAKKKAEEAKKKADAAKKKAEEAKKAAE-----AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 342 IIEELNTKIiEEEKKTLELKDKLTTADKLLGELQ--EQIVQKNQEIKNMKLELTNSKQKERQSSEEIKqlmgtVEELQKR 419
Cdd:PTZ00121 1379 KADAAKKKA-EEKKKADEAKKKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK-----ADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 420 NHKDSQFETdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQMEEmKTRHKGEMENALRSYSNITVNEDQ 499
Cdd:PTZ00121 1453 AEEAKKAEE---AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK-AAEAKKKADEAKKAEEAKKADEAK 1528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 500 IKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSR-EQIQRARQTIAEQESKLNEAHKSLS 578
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 579 TVEDLKAE--IVSASESRKELELKHEAEVTNYKI-----KLEMLEKEKNAVLDRMAE-SQEAELERLRTQLLFSHEEELS 650
Cdd:PTZ00121 1609 AEEAKKAEeaKIKAEELKKAEEEKKKVEQLKKKEaeekkKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKKAEEDEK 1688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 651 KLKEDL--EIEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQ--SLVNS 724
Cdd:PTZ00121 1689 KAAEALkkEAEEAKKAEELKKKEAEEKKkaEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHlkKEEEK 1768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 725 KSEEMTLQINELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKDEKKTLED 801
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNlviNDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 802 MLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCiqlNEEIEKQRNTFSFAEKNFEVNYQEL-QEEY 880
Cdd:PTZ00121 1848 AFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKID---KDDIEREIPNNNMAGKNNDIIDDKLdKDEY 1924
|
730
....*....|....*.
gi 119597273 881 acllkVKDDLEDSKNK 896
Cdd:PTZ00121 1925 -----IKRDAEETREE 1935
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
321-804 |
2.46e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 321 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKEr 400
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKI- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 401 qssEEIKQLMGTVEELQKRNhkdSQFETDIvqrmeQETQRKLEQLRAELDEMYgQQIVQMKQElirqhmaqmeemKTRHK 480
Cdd:TIGR04523 211 ---QKNKSLESQISELKKQN---NQLKDNI-----EKKQQEINEKTTEISNTQ-TQLNQLKDE------------QNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 481 GEMENalrSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEklkeelglileekcalQRQLEDLVEELSFSREQIQRAR 560
Cdd:TIGR04523 267 KQLSE---KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE----------------QDWNKELKSELKNQEKKLEEIQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 561 QTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKElelkheaEVTNYKIKLEMLEKEKNAVLDRMaESQEAELERLRTQ 640
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSESENSEKQR-------ELEEKQNEIEKLKKENQSYKQEI-KNLESQINDLESK 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 641 llFSHEEELSKLKEdleiehrINIEKLKDNlgihyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQS 720
Cdd:TIGR04523 400 --IQNQEKLNQQKD-------EQIKKLQQE-----KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 721 LvNSKSEEMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQLKTELLEKQ---MKEKENDLQEKFAQLEAENSILK 793
Cdd:TIGR04523 466 L-ETQLKVLSRSINKIKQNLEQKQKElkskEKELKKLNEEKKELEEKVKDLTKKissLKEKIEKLESEKKEKESKISDLE 544
|
490
....*....|.
gi 119597273 794 DEKKTLEDMLK 804
Cdd:TIGR04523 545 DELNKDDFELK 555
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
169-672 |
5.50e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 5.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 169 LEMMESELAGKQHEIEELNRELEEMRVTYG------------TEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDET 236
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEklekevkeleelKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 237 MREFLELTEQSQKLQIQFQQLQASETLRNSTH------SSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQI 310
Cdd:PRK03918 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLdelreiEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 311 SFLQEKIKVYEMEQDKKVensNKEEIQEKETI--IEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNM 388
Cdd:PRK03918 355 EELEERHELYEEAKAKKE---ELERLKKRLTGltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 389 KLELTNSKQKERQSSEEIKqlmgtvEELQKRNHKdsqfETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQH 468
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHR------KELLEEYTA----ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 469 MAQMEEMKTRHKG----EMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLed 544
Cdd:PRK03918 502 AEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL-- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 545 lvEELSFsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLD 624
Cdd:PRK03918 580 --EELGF--ESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KAFEELAETEKRLEELRKELEELEK 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 119597273 625 RMAESQEAELERLRTQL---LFSHEEELSKLKEDLEiEHRINIEKLKDNLG 672
Cdd:PRK03918 655 KYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
284-788 |
7.14e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 7.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 284 THQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQdkkvensnkEEIQEKETIIEELNTKIIEEEKKTLELKDK 363
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR---------EELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 364 LTTADKLLGEL-----------------QEQIVQKNQEIKNMKLELTNSKQKERQS----SEEIKQLMGTVEELQKRNHK 422
Cdd:PRK02224 281 VRDLRERLEELeeerddllaeaglddadAEAVEARREELEDRDEELRDRLEECRVAaqahNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 423 --------DSQFETDIVQRMEQETQrkLEQLRAELDEM---YGQQIVQMKQELIRQHMAQMEEMKTRHK-GEMENALRSY 490
Cdd:PRK02224 361 lreeaaelESELEEAREAVEDRREE--IEELEEEIEELrerFGDAPVDLGNAEDFLEELREERDELREReAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 491 SNiTVNEDQIKL---------MNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQR---QLEDLVE---ELSFSREQ 555
Cdd:PRK02224 439 RE-RVEEAEALLeagkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEErleRAEDLVEaedRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 556 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMaesqeAELE 635
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-----ESLE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 636 RLRTQL--LFSHEEELSKLKEDLEIEHRINIEKlKDNLGiHYKQQIDGLQNEMSQ-KIETMQFEKDNLITKQNQlileis 712
Cdd:PRK02224 593 RIRTLLaaIADAEDEIERLREKREALAELNDER-RERLA-EKRERKRELEAEFDEaRIEEAREDKERAEEYLEQ------ 664
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119597273 713 klkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKEnDLQEKFAQLEAE 788
Cdd:PRK02224 665 ---------VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAE-ELESMYGDLRAE 730
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
513-1175 |
7.30e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 7.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 513 KLQDTnsqKEKLkEELGLILEEkcaLQRQLEDLveelsfsREQIQRAR--QTIAEQESKLnEAHKSLSTVEDLKAEIVSA 590
Cdd:COG1196 180 KLEAT---EENL-ERLEDILGE---LERQLEPL-------ERQAEKAEryRELKEELKEL-EAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 591 SESRKELELKHEAEVTnykiKLEMLEKEKnavldrmaESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDn 670
Cdd:COG1196 245 EAELEELEAELEELEA----ELAELEAEL--------EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 671 lgIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEmtlqINELQKEIEILRQEEKEK 750
Cdd:COG1196 312 --RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL----LEAEAELAEAEEELEELA 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 751 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIfldsikskskdsvw 830
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-------------- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 831 ekeieilieenEDLKQQCIQLNEEIEKQRNTFSFAEKNfevnYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNE 910
Cdd:COG1196 452 -----------AELEEEEEALLELLAELLEEAALLEAA----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 911 ELhlQRINPTTVKMKSSVFDEDKTFVAETLE--MGEVVEKDTTELMEKLEVTKREK------LELSQRLSDLSEQLKQKH 982
Cdd:COG1196 517 AG--LRGLAGAVAVLIGVEAAYEAALEAALAaaLQNIVVEDDEVAAAAIEYLKAAKagratfLPLDKIRARAALAAALAR 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 983 GEISFLNEEVKSLKQEKEQVSLRCRE--LEIIINHNRAENVQscdtQVSSLLDGVVTMTSRGAEGsvskvnksfGEESKI 1060
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAAL----RRAVTLAGRLREVTLEGEG---------GSAGGS 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1061 MVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQNDLRLQMEAQRicLSLVYSTHV 1140
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL--EAEREELLE 739
|
650 660 670
....*....|....*....|....*....|....*
gi 119597273 1141 DQVREYMENEKDKALCSLKEELIFAQEEKIKELQK 1175
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
334-559 |
1.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 334 EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTV 413
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 414 EELQKRNHKdsqfETDIVQRMEQETQRKL-----EQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR 488
Cdd:COG4942 100 EAQKEELAE----LLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119597273 489 SYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 559
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
173-378 |
1.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 173 ESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 252
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 253 QFQQlQASETLRNSTHSS-----TAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 327
Cdd:COG4942 105 ELAE-LLRALYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 119597273 328 VENSNK--EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 378
Cdd:COG4942 184 EEERAAleALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
168-605 |
2.05e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 168 HLEMMESELAGKQHEIEELNRELEEMRVTYGT--EGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfleLTE 245
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMlrKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE---ITK 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 246 QSQKLQIQFQQLQasetlrnstHSSTAADLLQ-AKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 323
Cdd:pfam15921 522 LRSRVDLKLQELQ---------HLKNEGDHLRnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEk 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 324 -QDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL---KDKLTTADKLLGELQEQIVQKNQEIKNmklELTNSKQKE 399
Cdd:pfam15921 593 aQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLeleKVKLVNAGSERLRAVKDIKQERDQLLN---EVKTSRNEL 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 400 RQSSEEIkqlmgtveELQKRNHKDSQFEtdivqrMEQETQRKLEQLRAELDEMygqqivqmkqeliRQHMAQMEEMKTRH 479
Cdd:pfam15921 670 NSLSEDY--------EVLKRNFRNKSEE------METTTNKLKMQLKSAQSEL-------------EQTRNTLKSMEGSD 722
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 480 KGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 559
Cdd:pfam15921 723 GHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 119597273 560 RQTIAEQESKLNEAHKSLSTVEDLkaeIVSASESRKELELKHEAEV 605
Cdd:pfam15921 803 KEKVANMEVALDKASLQFAECQDI---IQRQEQESVRLKLQHTLDV 845
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
152-657 |
2.89e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 152 GVDDSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTygtegLQQLQEFEAAIKQRDGIITQLTANLQQARR 231
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARET-----RDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 232 EKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQIS 311
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 312 FLQEKIKVYEMEQDKKVE---------NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKN 382
Cdd:PRK02224 346 SLREDADDLEERAEELREeaaeleselEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 383 QEIKnmklELTNSKQKERQSSEEIKQLM---------------GTVEELQKRNHKDSQFETDIVQRMEQETQR------- 440
Cdd:PRK02224 426 EREA----ELEATLRTARERVEEAEALLeagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVeerlera 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 441 -KLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNS 519
Cdd:PRK02224 502 eDLVEAEDRIERL--EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 520 QKEKLKEELGLI--LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLStvEDLKAEIVSASESRKEL 597
Cdd:PRK02224 580 KLAELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE--AEFDEARIEEAREDKER 657
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119597273 598 ELKHEAEVTNykiKLEMLEKEKNAVLDR--MAESQEAELERLRTQLlfsheEELSKLKEDLE 657
Cdd:PRK02224 658 AEEYLEQVEE---KLDELREERDDLQAEigAVENELEELEELRERR-----EALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
329-644 |
3.29e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 329 ENSNKEEIQEKETIIEELNTKIIEEEKKTLE-----LKDKLTTADKLLGELQEQIVQKNQEIKNMKLEL-TNSKQKERQS 402
Cdd:TIGR02169 206 EREKAERYQALLKEKREYEGYELLKEKEALErqkeaIERQLASLEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 403 SEEIKQLMGTVEELQ------KRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMK 476
Cdd:TIGR02169 286 EEEQLRVKEKIGELEaeiaslERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 477 TRhkgemENALRSysnitvnedQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 556
Cdd:TIGR02169 364 EE-----LEDLRA---------ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 557 QRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELER 636
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
....*...
gi 119597273 637 LRTQLLFS 644
Cdd:TIGR02169 510 RAVEEVLK 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
323-805 |
3.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 323 EQDKKVENSNKEEIQEKETiiEELNTKIiEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLElTNSKQKERQS 402
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKA--DEAKKKA-EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADEAKK 1529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 403 SEEIKQlmgtVEELQKRNHKDSQFETDIVQRMEQ-ETQRKLEQLRAELDEMYG--------QQIVQMKQELIRQHMAQME 473
Cdd:PTZ00121 1530 AEEAKK----ADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMalrkaeeaKKAEEARIEEVMKLYEEEK 1605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 474 EMKTRHKGEMENALRSYSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED---LVEELS 550
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkkKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 551 FSREQIQRARQTIA--EQESKLNEAHKSLSTVEDLKAEIVSASESRKEL---ELKHEAEVTNYKIKLEMLEKEKNAVLDR 625
Cdd:PTZ00121 1682 KAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 626 MAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQN 705
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 706 QliLEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILR--QEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqeKFA 783
Cdd:PTZ00121 1842 Q--LEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEddEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDI--IDD 1917
|
490 500
....*....|....*....|..
gi 119597273 784 QLEAENSILKDEKKTLEDMLKI 805
Cdd:PTZ00121 1918 KLDKDEYIKRDAEETREEIIKI 1939
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
155-794 |
3.67e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 155 DSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTA--------NL 226
Cdd:COG4913 269 ERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLE--------AELERLEARLDALREELDELEAqirgnggdRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 227 QQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthssTAADLLQAKQQILTHQQQLEEQDHLLEDYQ----KK 302
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALLAALGLPLPA-------SAEEFAALRAEAAALLEALEEELEALEEALaeaeAA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 303 KEDFTMQISFLQEKIKVYEmeqdKKVENSNKEEIQEKETIIEELNtkIIEEEKK----TLELKDK----LTTADKLLGEL 374
Cdd:COG4913 414 LRDLRRELRELEAEIASLE----RRKSNIPARLLALRDALAEALG--LDEAELPfvgeLIEVRPEeerwRGAIERVLGGF 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 375 -------QEQIVQKNQEIKNMKLeltnskqKERQSSEEIKQlmGTVEELQKRNHKDSqfetdIVQRMEQETQRKLEQLRA 447
Cdd:COG4913 488 altllvpPEHYAAALRWVNRLHL-------RGRLVYERVRT--GLPDPERPRLDPDS-----LAGKLDFKPHPFRAWLEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 448 ELDEMYGQQIVQMKQELIRQHMA-----QMEEMKTRHKGEMENALRSYSNI-TVNEDQIKLMNVAINELNIKLQDTNSQK 521
Cdd:COG4913 554 ELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 522 EKLKEELGLILEEKCALQRqledlVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIvsasesrKELELKH 601
Cdd:COG4913 634 EALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQL-------EELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 602 EAevtnykiklemLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKLKDNLGI--HYKQQI 679
Cdd:COG4913 702 EE-----------LEEELDELKGEIGR-LEKELEQAEEELD-ELQDRLEAAEDLARLELRALLEERFAAALGdaVERELR 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 680 DGLQNEMSQKIETMQFEKDNLITKQNQLILE-ISKLKDLQQSLvnsKSEEMTLQINELQKEIEILRQEEKEKGTLEQevQ 758
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADL---ESLPEYLALLDRLEEDGLPEYEERFKELLNE--N 843
|
650 660 670
....*....|....*....|....*....|....*.
gi 119597273 759 ELQLKTELLEKqMKEKENDLQEKFAQLeaeNSILKD 794
Cdd:COG4913 844 SIEFVADLLSK-LRRAIREIKERIDPL---NDSLKR 875
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
385-912 |
3.73e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 385 IKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnhkdsqfetdiVQRMEqETQRKLEQLRAELDEMYGQqiVQMKQEL 464
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKE-----------VKELE-ELKEEIEELEKELESLEGS--KRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 465 IRQHMAQMEEMKTRHKGEMENALRSysnitvneDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED 544
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 545 LvEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELEL-KHEAEVTNYKIKLEMLEKEKNAVL 623
Cdd:PRK03918 333 L-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPeKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 624 DRMAEsQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITK 703
Cdd:PRK03918 412 ARIGE-LKKEIKELKKAI-----EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 704 QNQLILE--ISKLKDLQQSLVNSKS-----------------EEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKT 764
Cdd:PRK03918 486 EKVLKKEseLIKLKELAEQLKELEEklkkynleelekkaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 765 ELLEKQMKEKENDLQEK-FAQLEAENSILKDEKKTLEDMLKIHTPVSQ-EERLIFLDSIKSKSKDSvwekeieilIEENE 842
Cdd:PRK03918 566 DELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLELKDAEKElEREEKELKKLEEELDKA---------FEELA 636
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119597273 843 DLKQQCIQLNEEIEKQRNTFSFAE-KNFEVNYQELQEEYACLLKVKDDLEDSKNkqelEYKSKLKALNEEL 912
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRRE----EIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
436-803 |
4.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 436 QETQRKLEQLRAELDemygqQIVQMKQELIRQ--HMAQMEEMKTRHKgEMENALRsysnitvnEDQIKLMNVAINELNIK 513
Cdd:TIGR02168 175 KETERKLERTRENLD-----RLEDILNELERQlkSLERQAEKAERYK-ELKAELR--------ELELALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 514 LQDTNSQKEKLKEELGlileekcALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAhksLSTVEDLKAEIVSASES 593
Cdd:TIGR02168 241 LEELQEELKEAEEELE-------ELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL---ANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 594 RKELELKHEAevtnYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKlkdnlgi 673
Cdd:TIGR02168 311 LANLERQLEE----LEAQLEELESKLDELAEELAE-LEEKLEELKEELE-SLEAELEELEAELEELESRLEEL------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 674 hyKQQIDGLQNEMSQKIETMQfekdnliTKQNQLILEISKLKDLQQSLVNSKSE----EMTLQINELQKEIEILRQEEKE 749
Cdd:TIGR02168 378 --EEQLETLRSKVAQLELQIA-------SLNNEIERLEARLERLEDRRERLQQEieelLKKLEEAELKELQAELEELEEE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 119597273 750 KGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAensiLKDEKKTLEDML 803
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQ----LQARLDSLERLQ 498
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
349-1176 |
4.99e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 4.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 349 KIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFet 428
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 429 dIVQRMEQETQRKLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAIN 508
Cdd:pfam02463 234 -LNEERIDLLQELLRDEQEEIESS--KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 509 ELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIV 588
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 589 SASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEE----------ELSKLKEDLEI 658
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeelekqelkLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 659 EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLI-----TKQNQLILEISKLKDLQQSLVNSKSEEMTLQI 733
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 734 NELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDE---------KKTLEDMLK 804
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATleadeddkrAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 805 IHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNE------EIEKQRNTFSFAEKNFEVNYQELQE 878
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQelqekaESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 879 EYACLLKVKDDLEDSKnKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLE 958
Cdd:pfam02463 711 ELKKLKLEAEELLADR-VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 959 VTKREKLeLSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGVVTM 1038
Cdd:pfam02463 790 EEKEEKL-KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1039 TSRGAEGSV----------SKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQ 1108
Cdd:pfam02463 869 LQELLLKEEeleeqklkdeLESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK 948
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119597273 1109 KELNVLKSEQNDLRLQMEAQRICLSLVYSTHVDQVREymENEKDKALCSLKEELIFAQEEKIKELQKI 1176
Cdd:pfam02463 949 EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEE--KEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
203-419 |
5.22e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 203 QQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQI 282
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 283 LTHQQQLEEQdhlLEDYQKKKEDFTMQISFLQEKIK--VYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL 360
Cdd:COG4942 100 EAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLdaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 119597273 361 KDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 419
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
173-961 |
8.05e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 8.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 173 ESELAGKQHEIEELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 252
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 253 --QFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekikvYEMEQDKKVEN 330
Cdd:PTZ00121 1169 arKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA--------------KKAEAVKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 331 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmkleltnsKQKERQSSEEIKQlm 410
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK---------KADEAKKAEEKKK-- 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 411 gtVEELQKRnhKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEEMKTRHKGEMENALRS 489
Cdd:PTZ00121 1304 --ADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 490 YSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEElglilEEKCALQRQLEDLVEELSFSREQIQRArqtiaEQESK 569
Cdd:PTZ00121 1380 ADAAKKKAEEKK----KADEAKKKAEEDKKKADELKKA-----AAAKKKADEAKKKAEEKKKADEAKKKA-----EEAKK 1445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 570 LNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshEEEL 649
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----AEAK 1509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 650 SKLKEDLEIEHRINIEKLKdnlgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEm 729
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE- 1574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 730 tlQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPV 809
Cdd:PTZ00121 1575 --DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 810 SQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKvKDD 889
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN-KIK 1731
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119597273 890 LEDSKNKQELEYKSKLKALNEELHLQRInpTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTK 961
Cdd:PTZ00121 1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKI--AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
279-919 |
8.71e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 279 KQQILTHQQQLEEQDHLLEDYQKKKEDFtmqISFLQEKIKVYEMEQDKKVENSNKEEIQEK-ETIIEELNTK--IIEEEK 355
Cdd:TIGR01612 1117 KDDIKNLDQKIDHHIKALEEIKKKSENY---IDEIKAQINDLEDVADKAISNDDPEEIEKKiENIVTKIDKKknIYDEIK 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 356 KTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKerQSSEEIKQLMGTVEELQKRNHKDSQFETDIvqRME 435
Cdd:TIGR01612 1194 KLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKK--KSEHMIKAMEAYIEDLDEIKEKSPEIENEM--GIE 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 436 QETQRKLEQLRAELDEMYGQQIVQMKQEL----IRQHMAQMEEMKTRHK--GEMENALRSY--SNITVNEDQIKLMNVAI 507
Cdd:TIGR01612 1270 MDIKAEMETFNISHDDDKDHHIISKKHDEnisdIREKSLKIIEDFSEESdiNDIKKELQKNllDAQKHNSDINLYLNEIA 1349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 508 NELNI-KLQDTNSQKEKLKEELGLILEEKcalqrqlEDLVEELSFSREQIQRARQTIAEQESKlneaHKSLSTVE--DLK 584
Cdd:TIGR01612 1350 NIYNIlKLNKIKKIIDEVKEYTKEIEENN-------KNIKDELDKSEKLIKKIKDDINLEECK----SKIESTLDdkDID 1418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 585 AEIVSASESRKELeLKHEAEVTNYKIKLEmlEKEKNAVLD----RMAESQEAELERLRTQLLFS-HEEELSKLKEDLEIE 659
Cdd:TIGR01612 1419 ECIKKIKELKNHI-LSEESNIDTYFKNAD--ENNENVLLLfkniEMADNKSQHILKIKKDNATNdHDFNINELKEHIDKS 1495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 660 HRINIEKLKDNLGI--------HYKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKLKDlQQSLVNSKSEEmtl 731
Cdd:TIGR01612 1496 KGCKDEADKNAKAIeknkelfeQYKKDVTELLNKYSALAIKNKFAKTK--KDSEIIIKEIKDAHK-KFILEAEKSEQ--- 1569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 732 QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQM------KEKENDLQEKFAQLEAENSILKDEKKTLEDMLKI 805
Cdd:TIGR01612 1570 KIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFlkisdiKKKINDCLKETESIEKKISSFSIDSQDTELKENG 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 806 HTPVSQEErliFLDSIKSKSKDsvwekeieilieeNEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAclLK 885
Cdd:TIGR01612 1650 DNLNSLQE---FLESLKDQKKN-------------IEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIA--IA 1711
|
650 660 670
....*....|....*....|....*....|....
gi 119597273 886 VKDDLEDSKNKQELEYKSKLKALNEElHLQRINP 919
Cdd:TIGR01612 1712 NKEEIESIKELIEPTIENLISSFNTN-DLEGIDP 1744
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
367-593 |
9.86e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 9.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 367 ADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnHKDSQFETDIVQRMEQETQRKLEQLR 446
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 447 AELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEM----ENALRSYSNITV-------NEDQIKLMNVAINELNIKLQ 515
Cdd:COG4942 97 AELEA---------QKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYlkylapaRREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119597273 516 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASES 593
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
226-641 |
1.50e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 226 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASEtlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKED 305
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-----EELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 306 FTMQISFLQEKIKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLE-LKDKLTTADKLLGELQEQIVQKNQE 384
Cdd:COG4717 151 LEERLEELRELEE--ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 385 IKNMKLELTNSKQKERQSSEEIKQL-MGTVEELQKRNHKDSQFETDI----------VQRMEQETQRKLEQLRAELDEmy 453
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIagvlflvlglLALLFLLLAREKASLGKEAEE-- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 454 gqqiVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELN--IKLQDTNSQKEKLKEELGL- 530
Cdd:COG4717 307 ----LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVe 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 531 ---ILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEahkslstvEDLKAEIVSASESRKELELKHE---AE 604
Cdd:COG4717 383 deeELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEelrEE 454
|
410 420 430
....*....|....*....|....*....|....*..
gi 119597273 605 VTNYKIKLEMLEKeknavlDRMAESQEAELERLRTQL 641
Cdd:COG4717 455 LAELEAELEQLEE------DGELAELLQELEELKAEL 485
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
517-804 |
2.11e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 49.47 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 517 TNSQKEKLKEELGLILEE---KCALQRQLEDLVEELSFSREQIQRARQTIAEQESKL-NEAHKSLSTV---EDLKAEI-- 587
Cdd:PLN03229 460 LNEMIEKLKKEIDLEYTEaviAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLkDEFNKRLSRApnyLSLKYKLdm 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 588 -VSASESRKELELKHEAEvtnyKIKLEMLEKEKnAVLDRmaESQEAELERLRTQLlfsHEEELSKLkEDLEIEHRINIEK 666
Cdd:PLN03229 540 lNEFSRAKALSEKKSKAE----KLKAEINKKFK-EVMDR--PEIKEKMEALKAEV---ASSGASSG-DELDDDLKEKVEK 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 667 LKDNLgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEI------SKLKDLQQSlVNSKSEEMtLQINELQKEI 740
Cdd:PLN03229 609 MKKEI-----------ELELAGVLKSMGLEVIGVTKKNKDTAEQTpppnlqEKIESLNEE-INKKIERV-IRSSDLKSKI 675
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 741 EILRQEeKEKGTLEQEVQELQlKTELLEKQMKEK------ENDLQEKFAQLEAENSILKDEKKTLEDMLK 804
Cdd:PLN03229 676 ELLKLE-VAKASKTPDVTEKE-KIEALEQQIKQKiaealnSSELKEKFEELEAELAAARETAAESNGSLK 743
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
524-815 |
2.96e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.77 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 524 LKEELGLILEekcALQR----QLEDLVEELSfsREQIQRARqtiaeqeSKLNEAHKSLSTVEDLKAEIVSASESRKELEL 599
Cdd:PRK05771 14 LKSYKDEVLE---ALHElgvvHIEDLKEELS--NERLRKLR-------SLLTKLSEALDKLRSYLPKLNPLREEKKKVSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 600 KHEAEVtnykikLEMLEKEKNAVLDRMaESQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEkLKDNLGIHYKQQI 679
Cdd:PRK05771 82 KSLEEL------IKDVEEELEKIEKEI-KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 680 DGlqnemsqKIETMQFEKDNLITKQNQLIlEISKLKDLQQSLVNSKSEEMTLQINELqKEIEILRQEEKEKGTLEQEVQE 759
Cdd:PRK05771 149 VG-------TVPEDKLEELKLESDVENVE-YISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIRE 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119597273 760 L-----QLKTEL--LEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLK------IH--TPVSQEERL 815
Cdd:PRK05771 220 IkeeleEIEKEResLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKtdktfaIEgwVPEDRVKKL 290
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-441 |
3.27e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 185 ELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDgiiTQLTANLQQARREKDETMREFLElteQSQKLQIQFQQLQASETLR 264
Cdd:pfam17380 345 ERERELERIRQEERKRELERIRQEEIAMEISR---MRELERLQMERQQKNERVRQELE---AARKVKILEEERQRKIQQQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 265 NSTHSSTAADLLQAKQQILthQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyemEQDKKVENSNKEEIQEKETIIE 344
Cdd:pfam17380 419 KVEMEQIRAEQEEARQREV--RRLEEERAREMERVRLEEQERQQQVERLRQQ------EEERKRKKLELEKEKRDRKRAE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 345 ELNTKIIEEE-----KKTLELKDKLTTADKLLGELQEQIVQKNQEiknMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 419
Cdd:pfam17380 491 EQRRKILEKEleerkQAMIEEERKRKLLEKEMEERQKAIYEEERR---REAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
250 260
....*....|....*....|..
gi 119597273 420 NHKDSQFETDIVQRMEQETQRK 441
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARA 589
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
553-912 |
3.69e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 553 REQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElkhEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEA 632
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR---EYEGYELLKEKEALERQKEAIERQLAS-LEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 633 ELERLrTQLLFSHEEELSKLKEDLEIEHRiNIEKLKDNLGIHYKQQIDGLQNEMSQ---KIETMQFEKDNLITKQNQLIL 709
Cdd:TIGR02169 252 ELEKL-TEEISELEKRLEEIEQLLEELNK-KIKDLGEEEQLRVKEKIGELEAEIASlerSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 710 EISKLKdlqqslvnskseemtLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLeaen 789
Cdd:TIGR02169 330 EIDKLL---------------AEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL---- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 790 silKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRntfsfaeknf 869
Cdd:TIGR02169 388 ---KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE---------- 454
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 119597273 870 evnyQELQEEYACLLKVKDDLEDSKNKQElEYKSKLKALNEEL 912
Cdd:TIGR02169 455 ----WKLEQLAADLSKYEQELYDLKEEYD-RVEKELSKLQREL 492
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
589-804 |
4.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 589 SASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEiEHRINIEKLK 668
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 669 dnlgihykQQIDGLQNEMSQKIETMQ----FEKDNLITKQNQLILEISKLKDLQQslVNSKSEEMTLQINELQKEIEILR 744
Cdd:COG4942 97 --------AELEAQKEELAELLRALYrlgrQPPLALLLSPEDFLDAVRRLQYLKY--LAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119597273 745 QE-EKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKDEKKTLEDMLK 804
Cdd:COG4942 167 AElEAERAELEALLAELEEERAALEALKAERQkllARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
522-1035 |
5.02e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 522 EKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElKH 601
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL---PELREELEKLEKEVKELE-EL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 602 EAEVTNYKIKLEMLEKEKNAV------LDRMAESQEAELERLRTQLLFSHE--------EELSKLKEDLEIEHRiNIEKL 667
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLeekireLEERIEELKKEIEELEEKVKELKElkekaeeyIKLSEFYEEYLDELR-EIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 668 KDNlgihYKQQIDGLQNEMSqKIETMQFEKDNLITKQNQLILEISKLKdlqqslvnsKSEEMTLQINELQKEIEILRQEE 747
Cdd:PRK03918 316 LSR----LEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELE---------ERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 748 KEKgtleqEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHT-------PVSQEERLIFLDS 820
Cdd:PRK03918 382 TGL-----TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgrELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 821 IKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTF----------SFAEKNFEVNYQELQEEYACLLKVKDDL 890
Cdd:PRK03918 457 YTAELKRI--EKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlkELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 891 edskNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELS-- 968
Cdd:PRK03918 535 ----IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKda 610
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119597273 969 -QRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGV 1035
Cdd:PRK03918 611 eKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
501-1185 |
5.26e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 501 KLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsreqIQRARQTIAEQESKLNEAHKSLSTV 580
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEK------LAQVLKENKEEEKEKKLQEEELKLL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 581 EDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEH 660
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 661 RINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILeisKLKDLQQSLVNSKSEEMTLQINELQKEI 740
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDL---LKEEKKEELEILEEEEESIELKQGKLTE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 741 EILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDS 820
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 821 IKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEyacLLKVKDDLEDSKNKQELE 900
Cdd:pfam02463 529 GRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKL---KLPLKSIAVLEIDPILNL 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 901 YKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQ 980
Cdd:pfam02463 606 AQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 981 KhgeiSFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGVVTMTSRGAEGSVSKVNKSFGEESKI 1060
Cdd:pfam02463 686 E----SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1061 MVEDKVSFENMTVGEESKQEQLILDHLpSVTKESSLRATQPSENDKLQKELNVLKSEQNDLRLQMEAQRICLSLVYSTHV 1140
Cdd:pfam02463 762 KEEEKSELSLKEKELAEEREKTEKLKV-EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 119597273 1141 DQVREYMENEKDKALCSLKEELIFAQEEKIKELQKIHQLELQTMK 1185
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK 885
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
538-745 |
5.66e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 538 LQRQLEDLVEELSFSREQIQRARQTIAEQESKLN---EAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEM 614
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefrQKNGLVDLSEEAKLLLQQLSELESQLA-EARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 615 LEKEKNAVLDRMAE-SQEAELERLRTQLLfSHEEELSKLKEDLEIEH--RINIEKLKDNLGIHYKQQIDGLQNEMSQKIE 691
Cdd:COG3206 245 LRAQLGSGPDALPElLQSPVIQQLRAQLA-ELEAELAELSARYTPNHpdVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 119597273 692 TMQFEKDNLITKQNQLILEISKLKDLQQslvnskseemtlQINELQKEIEILRQ 745
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEA------------ELRRLEREVEVARE 365
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
333-1021 |
5.73e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.12 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 333 KEEIQEKETIIEELNTKIIEEEK-------KTLELKDKLTTADKLLGELQEQ---IVQKNQEIK---NMKLELTN----- 394
Cdd:TIGR01612 557 KKLIHEIKKELEEENEDSIHLEKeikdlfdKYLEIDDEIIYINKLKLELKEKiknISDKNEYIKkaiDLKKIIENnnayi 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 395 ---SKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETD--------IVQRME---QETQRKLEQLRAELDEMYgQQIVQM 460
Cdd:TIGR01612 637 delAKISPYQVPEHLKNKDKIYSTIKSELSKIYEDDIDalynelssIVKENAidnTEDKAKLDDLKSKIDKEY-DKIQNM 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 461 KQELIRQHMAQME-----------EMKTRHKGEMENALrsysNITVNEDQIKLmnvaiNELNIKLQDTNSQKEKLKEELG 529
Cdd:TIGR01612 716 ETATVELHLSNIEnkknelldiivEIKKHIHGEINKDL----NKILEDFKNKE-----KELSNKINDYAKEKDELNKYKS 786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 530 LILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYK 609
Cdd:TIGR01612 787 KISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEH 866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 610 IKL-EMLEKEKNAVLDRMAESQEAEL---ERLRTQLLFSHEEELSKLKEDLEIEHRINI-EKLKDNL-GIHYKQQIdgLQ 683
Cdd:TIGR01612 867 EQFaELTNKIKAEISDDKLNDYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LK 944
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 684 NEMSQKIETMQfeKDNLITK------QNQLILEISKL----KDLQQSLVNSKSEEMTLQINELQKEI-----EILRQEEK 748
Cdd:TIGR01612 945 EILNKNIDTIK--ESNLIEKsykdkfDNTLIDKINELdkafKDASLNDYEAKNNELIKYFNDLKANLgknkeNMLYHQFD 1022
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 749 EKgtlEQEVQELQLKTELLEKQMKEKENDLQEKFAQL--EAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSK 826
Cdd:TIGR01612 1023 EK---EKATNDIEQKIEDANKNIPNIEIAIHTSIYNIidEIEKEIGKNIELLNKEILE-----EAEINITNFNEIKEKLK 1094
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 827 ----DSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYK 902
Cdd:TIGR01612 1095 hynfDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 903 sklkalneelhlQRINPTTVKMKSSVFDEDKTFVAETLEmgevVEKDTTElmekLEVTKREKLELSQRLSDL-----SEQ 977
Cdd:TIGR01612 1175 ------------IENIVTKIDKKKNIYDEIKKLLNEIAE----IEKDKTS----LEEVKGINLSYGKNLGKLflekiDEE 1234
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 119597273 978 LKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENV 1021
Cdd:TIGR01612 1235 KKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET 1278
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
501-788 |
6.54e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 501 KLMNVAINELNikLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSF---SREQIQRARQTIAEQ------ESKLN 571
Cdd:COG3206 94 PVLERVVDKLN--LDEDPLGEEASREAAIERLRKNLTVEPVKGSNVIEISYtspDPELAAAVANALAEAyleqnlELRRE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 572 EAHKSLSTVEDLKAEIvsasesRKELELKhEAEVTNYKIK--LEMLEKEKNAVLDRMAESqEAELERLRTQLLfSHEEEL 649
Cdd:COG3206 172 EARKALEFLEEQLPEL------RKELEEA-EAALEEFRQKngLVDLSEEAKLLLQQLSEL-ESQLAEARAELA-EAEARL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 650 SKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-ILEISKLKDLQQSLVNSKSEE 728
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIaALRAQLQQEAQRILASLEAEL 322
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119597273 729 MTL--QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMkekeNDLQEKFAQLEAE 788
Cdd:COG3206 323 EALqaREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARLA 380
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
517-781 |
7.14e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 7.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 517 TNSQKEKLKEELGLILEEKCALQRQLEDlveelSFSREQIQRARQtiaEQESKLNEAHKSLSTVEdlkaeivsaSESRKE 596
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQE-----KFEKMEQERLRQ---EKEEKAREVERRRKLEE---------AEKARQ 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 597 LELKHEAEVTNYKIKLEMlekEKNAVLDRM-AESQEAELERLRTQLLFSHEEELSKLkEDLEIEHRINIEKLKDNLGIHY 675
Cdd:pfam17380 327 AEMDRQAAIYAEQERMAM---ERERELERIrQEERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 676 KQQIdgLQNEMSQKIETMQFEKDNLITKQ-NQLILEISKLKDLQQSlvnsKSEEMTLQINELQKEIEILRQEEKE----K 750
Cdd:pfam17380 403 KVKI--LEEERQRKIQQQKVEMEQIRAEQeEARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEErkrkK 476
|
250 260 270
....*....|....*....|....*....|....*
gi 119597273 751 GTLEQEVQELQLKTEL----LEKQMKEKENDLQEK 781
Cdd:pfam17380 477 LELEKEKRDRKRAEEQrrkiLEKELEERKQAMIEE 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
160-575 |
7.89e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 160 QGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYGT-EGLQQLQEFEAAIKQRDGIITQLTANLQQARREkdetMR 238
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQLLPLYQELEALEAELAELPERLEELEER----LE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 239 EFLELTEQSQKLQIQFQQLQAS-ETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI 317
Cdd:COG4717 157 ELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 318 KVYEMEQdkkvENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQ 397
Cdd:COG4717 237 EAAALEE----RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 398 KERQSSEEIKQLMG--------TVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM 469
Cdd:COG4717 313 LEELEEEELEELLAalglppdlSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 470 AQMEEMKTRHK-GEMENALRSYSNitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEE 548
Cdd:COG4717 393 QAEEYQELKEElEELEEQLEELLG----ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
410 420
....*....|....*....|....*..
gi 119597273 549 lsfsrEQIQRARQTIAEQESKLNEAHK 575
Cdd:COG4717 469 -----GELAELLQELEELKAELRELAE 490
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-750 |
1.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 496 NEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK 575
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 576 SLSTVedLKAEIVSASESRKELELKHEAEVTNYKiklemlekeKNAVLDRMAESQEAELERLRTQLlfsheEELSKLKED 655
Cdd:COG4942 105 ELAEL--LRALYRLGRQPPLALLLSPEDFLDAVR---------RLQYLKYLAPARREQAEELRADL-----AELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 656 LEIEhrinieklkdnlgihyKQQIDGLQNEMSQKIETMQfekdNLITKQNQLILEISKLKDLQQslvnSKSEEMTLQINE 735
Cdd:COG4942 169 LEAE----------------RAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELA----AELAELQQEAEE 224
|
250
....*....|....*
gi 119597273 736 LQKEIEILRQEEKEK 750
Cdd:COG4942 225 LEALIARLEAEAAAA 239
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
264-486 |
1.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 264 RNSTHSSTAADLLQakQQILTHQQQLEEQDHLLEDYQKKKE--DFTMQISFLQEKIKVYEMEQdkkveNSNKEEIQEKET 341
Cdd:COG3206 168 LRREEARKALEFLE--EQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQL-----AEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 342 IIEELNTKIIEEEKKTLELkdkltTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH 421
Cdd:COG3206 241 RLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119597273 422 KDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQI--------VQMKQELIRQHMAQMEEMKTRHKGEMENA 486
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAelrrlereVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
482-1020 |
1.10e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 482 EMENALRSYSN-ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRAR 560
Cdd:TIGR04523 37 QLEKKLKTIKNeLKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDK 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 561 QTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQE----AELER 636
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidkIKNKL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 637 LRTQLLFSHEEELSKLKEDLEIEhrinIEKLKdNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKD 716
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQ----ISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 717 LQQSLV--NSKSEEMTLQINELQKEIEILRQEEKEKGT--LEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAEN 789
Cdd:TIGR04523 272 KQKELEqnNKKIKELEKQLNQLKSEISDLNNQKEQDWNkeLKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKEL 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 790 SILKDEKKTLEDMLK---IHTPVSQEERLIFLDSIKS--------KSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQ 858
Cdd:TIGR04523 352 TNSESENSEKQRELEekqNEIEKLKKENQSYKQEIKNlesqindlESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 859 RNTFSFAEKNFEvnyqELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAE 938
Cdd:TIGR04523 432 KETIIKNNSEIK----DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 939 TLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQK---------HGEISFLNEEVKSLKQEKEQVSLRCREL 1009
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkkenlEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
570
....*....|.
gi 119597273 1010 EIIINHNRAEN 1020
Cdd:TIGR04523 588 QELIDQKEKEK 598
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
537-776 |
1.13e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 537 ALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElkheAEVTNYKIKLEMLE 616
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALE----QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 617 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQnemsQKIETMQFE 696
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 697 KDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLqINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKEN 776
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAE---LQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
712-911 |
1.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 712 SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 791
Cdd:COG4942 27 AELEQLQQEI-----AELEKELAALKKEEKALLKQLAA---LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 792 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 871
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 119597273 872 NYQELQEEYACLLKVKDD---LEDSKNKQELEYKSKLKALNEE 911
Cdd:COG4942 179 LLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQE 221
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
368-800 |
1.92e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.61 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 368 DKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR--NHKDSQFETDIVQRMEQeTQRKLEQL 445
Cdd:COG5022 809 RKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRfsLLKKETIYLQSAQRVEL-AERQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 446 RAELDEM-----YGQQIVQMKQELIRQHMAQME---EMKTRHKGEMENALRsysNITVNEDQIKlmNVAINELNIKLQDT 517
Cdd:COG5022 888 KIDVKSIsslklVNLELESEIIELKKSLSSDLIenlEFKTELIARLKKLLN---NIDLEEGPSI--EYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 518 NSQKEKLKEELGLILEekcalqrQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVS-ASESRKE 596
Cdd:COG5022 963 ESKLKETSEEYEDLLK-------KSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAElQSASKII 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 597 LElkheaEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNlgihyk 676
Cdd:COG5022 1036 SS-----ESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVT------ 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 677 qQIDGLQNEMSQKIETMQFEKDNLITKQNQLILeiSKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQE 756
Cdd:COG5022 1105 -NRNLVKPANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKR 1181
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 119597273 757 ---VQELQLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLE 800
Cdd:COG5022 1182 lyqSALYDEKSKLSSSEVNDLKNELIALF-SKIFSGWPRGDKLKKLI 1227
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
285-819 |
2.11e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 285 HQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEmeqdKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 364
Cdd:COG5022 898 KLVNLELESEIIELKKSLSSDLIENLEFKTELIARLK----KLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEY 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 365 TTADKLLGELQEQIVQKNQEIKNMKLELTN-SKQKER--QSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMeqetqRK 441
Cdd:COG5022 974 EDLLKKSTILVREGNKANSELKNFKKELAElSKQYGAlqESTKQLKELPVEVAELQSASKIISS-ESTELSIL-----KP 1047
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 442 LEQLRAELDEMYgqqivqmkqeliRQHMAQMEEMKTRHkgemENALRSYSNITVNEDQIKLMNvAINELNIKLQDTNSQK 521
Cdd:COG5022 1048 LQKLKGLLLLEN------------NQLQARYKALKLRR----ENSLLDDKQLYQLESTENLLK-TINVKDLEVTNRNLVK 1110
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 522 EKLKEE--------LGLILEEK-----------------CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK- 575
Cdd:COG5022 1111 PANVLQfivaqmikLNLLQEISkflsqlvntlepvfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDe 1190
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 576 ----SLSTVEDLKAEIVS-ASESRKELELKHE-----AEVTNYKIKLEMLeKEKNAVLDRMAESQEAELERLRTQLLfSH 645
Cdd:COG5022 1191 ksklSSSEVNDLKNELIAlFSKIFSGWPRGDKlkkliSEGWVPTEYSTSL-KGFNNLNKKFDTPASMSNEKLLSLLN-SI 1268
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 646 EEELSKLKEDLEIEHRInieklkdnlgihykqqidglQNEMSQKIETMQFekDNLITKQNQLILEISKLKDLQQSLVNSK 725
Cdd:COG5022 1269 DNLLSSYKLEEEVLPAT--------------------INSLLQYINVGLF--NALRTKASSLRWKSATEVNYNSEELDDW 1326
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 726 SEEMtlQINELQKEIEILRQEEKEKGTLE-------------QEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSIL 792
Cdd:COG5022 1327 CREF--EISDVDEELEELIQAVKVLQLLKddlnkldelldacYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIK 1404
|
570 580 590
....*....|....*....|....*....|.
gi 119597273 793 KDEKKTLEDMLKIHTPVSQ----EERLIFLD 819
Cdd:COG5022 1405 QELQLSLEGKDETEVHLSEifseEKSLISLD 1435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
518-772 |
2.29e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 518 NSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKEL 597
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL---AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 598 ELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHeeelsklkedLEIEHRINIEKLKDNLgihykQ 677
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY----------LAPARREQAEELRADL-----A 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 678 QIDGLQnemsQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEemtlQINELQKEIEILRQEEKEkgtLEQEV 757
Cdd:COG4942 161 ELAALR----AELEAERAELEALLAELEEERAALEALKAERQKLLARLEK----ELAELAAELAELQQEAEE---LEALI 229
|
250
....*....|....*
gi 119597273 758 QELQLKTELLEKQMK 772
Cdd:COG4942 230 ARLEAEAAAAAERTP 244
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
245-640 |
2.79e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 245 EQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 323
Cdd:pfam05557 48 DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELEl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 324 --QDKKVENSNkEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQiVQKNQEIKNMKLELTNSKQKER- 400
Cdd:pfam05557 128 qsTNSELEELQ-ERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQ-EQDSEIVKNSKSELARIPELEKe 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 401 --QSSEEIKQLMGTVE--ELQKRNHKDSQFETDIVQRMEQET---QRKLEQLRAELDEMygQQIVQMKQELIRQHMAQME 473
Cdd:pfam05557 206 leRLREHNKHLNENIEnkLLLKEEVEDLKRKLEREEKYREEAatlELEKEKLEQELQSW--VKLAQDTGLNLRSPEDLSR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 474 EMKTRHKGEMENALRSYS----------NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLE 543
Cdd:pfam05557 284 RIEQLQQREIVLKEENSSltssarqlekARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 544 DLVEELSFSR-------------EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA-----EV 605
Cdd:pfam05557 364 SYDKELTMSNyspqllerieeaeDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPsyskeEV 443
|
410 420 430
....*....|....*....|....*....|....*
gi 119597273 606 TNYKIKLEMLEKEkNAVLDRMAESQEAELERLRTQ 640
Cdd:pfam05557 444 DSLRRKLETLELE-RQRLREQKNELEMELERRCLQ 477
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
321-1019 |
3.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 321 EMEQDKKVENSNKEEIQEKETIIEE---LNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmKLELTNSKQ 397
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEakkTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR--KAEDAKRVE 1155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 398 KERQSSEEIKQLMGTVEELQKRNHKDSQFETdiVQRMEQ----ETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQME 473
Cdd:PTZ00121 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEElrkaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 474 EMKTRhkgemENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQ-RQLEDL--VEELS 550
Cdd:PTZ00121 1234 EAKKD-----AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEaKKAEEKkkADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 551 FSREQIQRARQTI--AEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKH-EAEVTNYKIKLEMLEKEKNAVLDRMA 627
Cdd:PTZ00121 1309 KKAEEAKKADEAKkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 628 ESQEAELERLRTQLLFSHEEELSKLKEDLEI--EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQfEKDNLITKQN 705
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 706 qlilEISKLKDLQQSLVNS-KSEEMTLQINELQKEIEILRQ--EEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKF 782
Cdd:PTZ00121 1468 ----EAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKaaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 783 AQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQrntf 862
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK---- 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 863 sfaEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEM 942
Cdd:PTZ00121 1620 ---IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 943 GEVVEKDTTELMEKL--EVTKREKLELSQRLSDL-SEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAE 1019
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEaeEKKKAEELKKAEEENKIkAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
515-794 |
3.71e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 515 QDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESR 594
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 595 KELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERlrtqllfshEEELSKLKEDLEIEHRInieklkdnlgih 674
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKR---------EQEVTELKKALEEETRS------------ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 675 YKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKlkdlqQSLVNskseemtlQINELQKEIEILRQ----EEKEK 750
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQ--AKRNKANLEKAK-----QALES--------ENAELQAELRTLQQakqdSEHKR 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 119597273 751 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 794
Cdd:pfam01576 408 KKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
456-695 |
4.49e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 456 QIVQMKQ-----ELIRQHM---AQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVaINELNIKLQDTNSQKEKLkEE 527
Cdd:COG4913 199 KTQSFKPigdldDFVREYMleePDTFEAADALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAEL-EY 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 528 LGLILEEKCAlQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSL------------STVEDLKAEIVSASESRK 595
Cdd:COG4913 277 LRAALRLWFA-QRRLELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirgnggDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 596 ELELKHEaevtNYKIKLEMLE----------KEKNAVLDRMAESQEAELERLRTQlLFSHEEELSKLKEDL-EIEHRIN- 663
Cdd:COG4913 356 ERERRRA----RLEALLAALGlplpasaeefAALRAEAAALLEALEEELEALEEA-LAEAEAALRDLRRELrELEAEIAs 430
|
250 260 270
....*....|....*....|....*....|..
gi 119597273 664 IEKLKDNLGIHYKQQIDGLQNEMSQKIETMQF 695
Cdd:COG4913 431 LERRKSNIPARLLALRDALAEALGLDEAELPF 462
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
279-983 |
4.66e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 279 KQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQD-KKVENSNKEEIQEKETIIEELNTKIIEEEKKT 357
Cdd:TIGR00606 192 RQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREiVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 358 LELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE-----IKQLMGTVEELQKRNHKDSQFETDI-- 430
Cdd:TIGR00606 272 KALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERelvdcQRELEKLNKERRLLNQEKTELLVEQgr 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 431 ---------VQRMEQETQRKLEQLRAELDEM----YGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR-SYSNITVN 496
Cdd:TIGR00606 352 lqlqadrhqEHIRARDSLIQSLATRLELDGFergpFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERlKQEQADEI 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 497 EDQIKLMNVAINELNIKLQDTNSQKEKLKEEL-------GLILEEKCALQRQLEDL-------------VEELSFSREQ- 555
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssDRILELDQELRKAERELskaeknsltetlkKEVKSLQNEKa 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 556 -IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTN----------YKIKLEMLEKEKNAVLD 624
Cdd:TIGR00606 512 dLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSllgyfpnkkqLEDWLHSKSKEINQTRD 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 625 RMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EIEHRINIEKLKDNLGIHYKQQ--IDGLQNEMSQKIET 692
Cdd:TIGR00606 592 RLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSSKQRamLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 693 MQFEKDNL------ITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL----RQEEKEKGTLEQEVQELQL 762
Cdd:TIGR00606 672 LTDENQSCcpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglaPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 763 KTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDmlkihtpvsqeerLIFLDSIKSKSKDSVWEKEIEILIEENE 842
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-------------VTIMERFQMELKDVERKIAQQAAKLQGS 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 843 DLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTV 922
Cdd:TIGR00606 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ----EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119597273 923 KMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHG 983
Cdd:TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
689-795 |
6.45e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 689 KIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLE 768
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 119597273 769 KQMKEKENDLQEKFAQLEAENSILKDE 795
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
157-364 |
6.73e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 157 YSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARRekdet 236
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY-NELQAELEALQAEIDKLQAEIAEAEAEIEERRE----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 237 mreflELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQleeqdhLLEDYQKKKEDFTMQISFLQEK 316
Cdd:COG3883 87 -----ELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADAD------LLEELKADKAELEAKKAELEAK 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 119597273 317 IKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 364
Cdd:COG3883 156 LA--ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
321-782 |
6.79e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 321 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLG--ELQEQIVQKNQEIKNMKLELTNSKQK 398
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 399 ErqssEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqiVQMKQELIRQHMAQMEEMKTR 478
Cdd:COG4717 155 L----EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE------LQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 479 HKGEMENALRSYSNITVNE--DQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 556
Cdd:COG4717 225 LEEELEQLENELEAAALEErlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 557 QRARQTIAE---QESKLNEAHKSLSTVEDLKAEIVSASESRKE--LELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQE 631
Cdd:COG4717 305 EELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 632 AELERLRTQllFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 711
Cdd:COG4717 385 EELRAALEQ--AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119597273 712 SKLKDLQqslvnskseemtlQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKF 782
Cdd:COG4717 463 EQLEEDG-------------ELAELLQELEELKAELRE---LAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
696-1020 |
7.77e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 696 EKDNLITK-QNQLILEIsklKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQ-LKTELLEKQMKE 773
Cdd:PRK05771 17 YKDEVLEAlHELGVVHI---EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSvKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 774 KENDLQEKFAQLEAENSILKDEKKTLEdmlkihtpvSQEERLIFLDSikskskdsvwekeieilieenedlkqqciqLNE 853
Cdd:PRK05771 94 ELEKIEKEIKELEEEISELENEIKELE---------QEIERLEPWGN------------------------------FDL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 854 EIEKQRNTfsfaeKNFEVNYQELQEEYACLLKvkddLEDSKNKQELEYKSKLKALneelhlqrINPTTVKmkssvfdEDK 933
Cdd:PRK05771 135 DLSLLLGF-----KYVSVFVGTVPEDKLEELK----LESDVENVEYISTDKGYVY--------VVVVVLK-------ELS 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 934 TFVAETLEMGEVVEKDTtelmeklevtkREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE-LEII 1012
Cdd:PRK05771 191 DEVEEELKKLGFERLEL-----------EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyLEIE 259
|
....*...
gi 119597273 1013 INHNRAEN 1020
Cdd:PRK05771 260 LERAEALS 267
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
515-795 |
9.03e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 515 QDTNSQKEKLKEELGLILEEKcALQRQLEDLVEELsfsrEQIQRARQTIAEQESKLNEAHKSLSTV----EDLKAEIVSA 590
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDK-LVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAqaelEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 591 SESRKElelkheaevtnyKIKLEMLEKEKNAVLDRMAESQEA------ELERLRTQLLFSHEEELSKLKEDLEIEHRINi 664
Cdd:PRK11281 114 TRETLS------------TLSLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQPERAQAALYANSQRLQQIRNLLK- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 665 eKLKDNLGIHYKQQIDGLQNEMSQKietmqfekdNLITKQNQLILEISklkDLQQSLVNSKSEEMTLQINELQKEIEILR 744
Cdd:PRK11281 181 -GGKVGGKALRPSQRVLLQAEQALL---------NAQNDLQRKSLEGN---TQLQDLLQKQRDYLTARIQRLEHQLQLLQ 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 119597273 745 QEEKEKgtleqevqelqlKTELLEKQMKEKENdlQEKFAQLEaENSILKDE 795
Cdd:PRK11281 248 EAINSK------------RLTLSEKTVQEAQS--QDEAARIQ-ANPLVAQE 283
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
553-750 |
9.09e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 553 REQIQRARQTIAEQESKlneahkslSTVEDLKAEivsASESRKELELKHEAEVTNYKIKLEMLEKEKNavldrmaesqeA 632
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAK--------RILEEAKKE---AEAIKKEALLEAKEEIHKLRNEFEKELRERR-----------N 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 633 ELERLRTQLLfSHEEELSKLKEDLEIEHRInIEKLKDNLgihykqqidglqNEMSQKIETMQFEKDNLITKQNQLILEIS 712
Cdd:PRK12704 83 ELQKLEKRLL-QKEENLDRKLELLEKREEE-LEKKEKEL------------EQKQQELEKKEEELEELIEEQLQELERIS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 119597273 713 KL--KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEK 750
Cdd:PRK12704 149 GLtaEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-668 |
9.42e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 413 VEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELdemygqqivqmkqelirqhmaqmEEMKTRHkgemeNALRSYSN 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAAL-----------------------EEFRQKN-----GLVDLSEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 493 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQledlvEELSFSREQIQRARQTIAEQESKLNE 572
Cdd:COG3206 214 AKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTP 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 573 AHkslSTVEDLKAEIVSA----SESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAE--SQEAELERLRTQLLFSHE 646
Cdd:COG3206 289 NH---PDVIALRAQIAALraqlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpELEAELRRLEREVEVARE 365
|
250 260
....*....|....*....|....
gi 119597273 647 --EELSKLKEDLEIEHRINIEKLK 668
Cdd:COG3206 366 lyESLLQRLEEARLAEALTVGNVR 389
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
646-1008 |
9.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 646 EEELSKLKEDLEiEHRINIEKlkdnlgihykqqIDGLQNEMSQKIETMQFEKDNLItkqnqlileisKLKDLQQSLVNSK 725
Cdd:TIGR02169 169 DRKKEKALEELE-EVEENIER------------LDLIIDEKRQQLERLRREREKAE-----------RYQALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 726 SEEMTLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSilkDEKKTL-EDMLK 804
Cdd:TIGR02169 225 GYELLKEKEALERQKE---AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---EEQLRVkEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 805 IHTPVSQEERLIflDSIKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQR-------NTFSFAEKNFEVNYQELQ 877
Cdd:TIGR02169 299 LEAEIASLERSI--AEKERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEERkrrdkltEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 878 EE-------YACLLKVKDDLEDSKNKQElEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKT-FVAETLEMGEVVEKD 949
Cdd:TIGR02169 375 EVdkefaetRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINeLEEEKEDKALEIKKQ 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 119597273 950 TTELMEklevTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE 1008
Cdd:TIGR02169 454 EWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
313-598 |
1.31e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 313 LQEKIKVYEMEQDKKVENSNKEEI-QEKETIIEELNTKIIEEEKKTLElKDKLTTADKLLGELQEQIVQKNQEIKNMKLE 391
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLrQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 392 lTNSKQKERQSSEEIKQLMGTVEELQK----RNHKDSQFETDI-----VQRMEQETQRK-------LEQLRAELDEMYGQ 455
Cdd:pfam17380 357 -ERKRELERIRQEEIAMEISRMRELERlqmeRQQKNERVRQELeaarkVKILEEERQRKiqqqkveMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 456 QIVQMK------------QELIRQH----MAQMEEMKTRHKGEMENALRSYSNItvNEDQIKLMNVAINELNIKLQDTNS 519
Cdd:pfam17380 436 EVRRLEeeraremervrlEEQERQQqverLRQQEEERKRKKLELEKEKRDRKRA--EEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 520 QKEKLKEELGlilEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVE---DLKAEIVSASESRKE 596
Cdd:pfam17380 514 KRKLLEKEME---ERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMErerEMMRQIVESEKARAE 590
|
..
gi 119597273 597 LE 598
Cdd:pfam17380 591 YE 592
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
335-580 |
1.59e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 335 EIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGtve 414
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 415 ELQKRNHKDSQFE--------TDIVQRMEqetqrkleqlraeldemYGQQIVQMKQELIRQHMAQMEEMKTRHKGemena 486
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAE----- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 487 lrsysnitvNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQ 566
Cdd:COG3883 152 ---------LEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
250
....*....|....
gi 119597273 567 ESKLNEAHKSLSTV 580
Cdd:COG3883 223 AAAAAAAAAAAAAA 236
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
226-560 |
1.94e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 226 LQQARREKDETMREFLELTEQSQKLQIQFQQLqaSETLRNSTHSSTAADLLQAKQQIlthQQQLEEQDHLLEDYQKKKED 305
Cdd:PRK04863 788 IEQLRAEREELAERYATLSFDVQKLQRLHQAF--SRFIGSHLAVAFEADPEAELRQL---NRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 306 FTMQISFLQEKIK-VYEMEQDKKV--ENSNKEEIQEKETIIEEL--NTKIIEEEKKTLELKDKLTTAdklLGELQEQIVQ 380
Cdd:PRK04863 863 QRSQLEQAKEGLSaLNRLLPRLNLlaDETLADRVEEIREQLDEAeeAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQ 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 381 KNQEIKNMKLELTNSKQKERQSSEEIkqlmgtveelQKRNHkdsqFETDIVQRMEQETQRKLEQLRAELDEMYgQQIVQM 460
Cdd:PRK04863 940 LKQDYQQAQQTQRDAKQQAFALTEVV----------QRRAH----FSYEDAAEMLAKNSDLNEKLRQRLEQAE-QERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 461 KQELiRQHMAQMEEMKTRH---------KGEMENAL-RSYSNITVNEDQIKLMNVAI--NELNIKLQDTNSQKEKLKEEL 528
Cdd:PRK04863 1005 REQL-RQAQAQLAQYNQVLaslkssydaKRQMLQELkQELQDLGVPADSGAEERARArrDELHARLSANRSRRNQLEKQL 1083
|
330 340 350
....*....|....*....|....*....|..
gi 119597273 529 GLILEEKCALQRQLEDLVEELSFSREQIQRAR 560
Cdd:PRK04863 1084 TFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
466-1210 |
1.99e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 466 RQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLK--EELGLILEEKCA------ 537
Cdd:PTZ00121 1063 KAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAedarka 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 538 --LQRQLEDLVEELSFSREQIQRARQT-IAEQESKLNEAHKSLstvedlkaEIVSASESRKELELKHEAEVTNYkiklem 614
Cdd:PTZ00121 1143 eeARKAEDAKRVEIARKAEDARKAEEArKAEDAKKAEAARKAE--------EVRKAEELRKAEDARKAEAARKA------ 1208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 615 lEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEhriNIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQ 694
Cdd:PTZ00121 1209 -EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE---EIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 695 FEKdnlitkqnqlilEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKgtleQEVQELQLKTEllEKQMKEK 774
Cdd:PTZ00121 1285 KAE------------EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK----KKADAAKKKAE--EAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 775 ENDLQEKFAQLEAENSILK---DEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSvweKEIEILIEENEDLKQQCIQL 851
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKaeaAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED---KKKADELKKAAAAKKKADEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 852 NEEIEKQRNTFSFAEKNFEVNYQElqeeyacllKVKDDLEDSKNKQELEYKSKLKALNEELhlqrinpttvKMKSsvfdE 931
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKAD---------EAKKKAEEAKKAEEAKKKAEEAKKADEA----------KKKA----E 1480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 932 DKTFVAETLEMGEVVEKDTTELMEKLEVTKR----EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLR-C 1006
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKadeaKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1007 RELEIIINHNRAENVQSCDTQVSSLLDGVVTMTSRGAEGSVSKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDH 1086
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1087 LPSVTKESSLRATQPSENDKLQKELNVLKSEQN-----DLRLQMEAQRICLSLVY-----STHVDQVREYMENEKDKALC 1156
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkaeEAKKAEEDEKKAAEALKkeaeeAKKAEELKKKEAEEKKKAEE 1720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119597273 1157 SLK---------EELIFAQEEKIKELQKIHQLELQTMKTQETGDEGKPLHLLIGKLQKAVSEE 1210
Cdd:PTZ00121 1721 LKKaeeenkikaEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
278-451 |
2.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 278 AKQQILTHQQQLEEQDHL----LEDYQKK-------KEDFTMQISFLQEKIKVYEMEQDK-----------------KVE 329
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKngenIARKQNKydelveeAKTIKAEIEELTDELLNLVMDIEDpsaalnklntaaakiksKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 330 NSNKEE-IQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIvQKNQEIKNMKLELTNSKQKERQSSEEIKQ 408
Cdd:PHA02562 273 QFQKVIkMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQ 351
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 119597273 409 LMGTVEELQKRNHKD-SQFETDIVQRMEQetqrkLEQLRAELDE 451
Cdd:PHA02562 352 SLITLVDKAKKVKAAiEELQAEFVDNAEE-----LAKLQDELDK 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
494-657 |
2.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 494 TVNEDQIKLMNVAinELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEA 573
Cdd:COG1579 1 AMPEDLRALLDLQ--ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 574 HKSLSTV------EDLKAEIVSASESRKELElKHEAEVTNykiKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEE 647
Cdd:COG1579 79 EEQLGNVrnnkeyEALQKEIESLKRRISDLE-DEILELME---RIEELEEELAELEAELAE-LEAELEEKKAEL----DE 149
|
170
....*....|
gi 119597273 648 ELSKLKEDLE 657
Cdd:COG1579 150 ELAELEAELE 159
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
325-533 |
2.59e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.44 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 325 DKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTT----ADKLLGELQEQIV-QKNQEIKNMKLELTNSKQKE 399
Cdd:pfam09731 246 DQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSliahAHREIDQLSKKLAeLKKREEKHIERALEKQKEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 400 RQSSEEIKQLMGTVEELQKRNHKDSQFE--TDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM-------- 469
Cdd:pfam09731 326 DKLAEELSARLEEVRAADEAQLRLEFERerEEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLqdikekve 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119597273 470 -------AQMEEMKTRHKGeMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTN--SQKEKLKEELGLILE 533
Cdd:pfam09731 406 eeragrlLKLNELLANLKG-LEKATSSHSEVEDENRKAQQLWLAVEALRSTLEDGSadSRPRPLVRELKALKE 477
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
608-788 |
2.65e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 608 YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDnlgihykqqidgLQNEMS 687
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK------------LEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 688 QKIETMQFEKDNLITKQNQLILEISKLKDLQQSLvNSKSEEMTLQINELQKEIEI---LRQEEKEKGTLEQEVQELQLKT 764
Cdd:PRK12704 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQEL-EKKEEELEELIEEQLQELERisgLTAEEAKEILLEKVEEEARHEA 171
|
170 180
....*....|....*....|....
gi 119597273 765 ELLEKQMKEKendlqekfAQLEAE 788
Cdd:PRK12704 172 AVLIKEIEEE--------AKEEAD 187
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
202-412 |
2.75e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 202 LQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQ--------------------KLQIQFQQLQA-- 259
Cdd:PRK11281 65 LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDeetretlstlslrqlesrlaQTLDQLQNAQNdl 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 260 ---------------------------SETLRNSTHSSTAA---------DLLQAKQ-----QILTHQQQLEEQDHLLED 298
Cdd:PRK11281 145 aeynsqlvslqtqperaqaalyansqrLQQIRNLLKGGKVGgkalrpsqrVLLQAEQallnaQNDLQRKSLEGNTQLQDL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 299 YQKKKEDFTMQISFLQEKIKVY-EMEQDKKVENSNK-----EEIQEKETIIEelNTKIIEEEKKTLELKDKLTTADKLLG 372
Cdd:PRK11281 225 LQKQRDYLTARIQRLEHQLQLLqEAINSKRLTLSEKtvqeaQSQDEAARIQA--NPLVAQELEINLQLSQRLLKATEKLN 302
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 119597273 373 ELqeqiVQKNQEIKNMkleLTNSKQKERQSSEEIKQLMGT 412
Cdd:PRK11281 303 TL----TQQNLRVKNW---LDRLTQSERNIKEQISVLKGS 335
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
323-444 |
3.05e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 323 EQDKKVENSNKEEIqekETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELtnskqkERQS 402
Cdd:PRK00409 505 EEAKKLIGEDKEKL---NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA------EKEA 575
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 119597273 403 SEEIKQLMGTVEELQKRNHKDSQFETDIVQRME-QETQRKLEQ 444
Cdd:PRK00409 576 QQAIKEAKKEADEIIKELRQLQKGGYASVKAHElIEARKRLNK 618
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
182-441 |
3.05e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 182 EIEELNRELEEMRVTYGTEglqqLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQaSE 261
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDK----LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK-ND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 262 TLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSN----KEEIQ 337
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEldtvVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 338 EKETIIEELNTKIIEEEKKTLELKD---KLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVE 414
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
250 260
....*....|....*....|....*..
gi 119597273 415 ELQKRNHKDSQFETDIVQRMEQETQRK 441
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNI 953
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
166-510 |
3.41e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 166 PTHLEMMESELAGKQHEIEELnRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfLELTE 245
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEM-LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE-EESAK 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 246 QSQKLQIQFQQLQaSETLRNSTHSSTAADLLQAKQQILTHQQ---QLEEQDHLL-------EDYQKKKEDFTMQISFLQE 315
Cdd:TIGR00606 786 VCLTDVTIMERFQ-MELKDVERKIAQQAAKLQGSDLDRTVQQvnqEKQEKQHELdtvvskiELNRKLIQDQQEQIQHLKS 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 316 KIKVYEMEQDKKVENSNK-----EEIQEKETIIEELNTKIIEEEKKTLELKdklTTADKLLGELQEQIVQKNQEIKNMKL 390
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQRrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLE---TFLEKDQQEKEELISSKETSNKKAQD 941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 391 ELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHma 470
Cdd:TIGR00606 942 KVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-- 1019
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 119597273 471 QMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINEL 510
Cdd:TIGR00606 1020 NLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKL 1059
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-790 |
3.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 273 ADLLQAKQQILTHQQQLE-----EQDHllEDYQKKKEDFTmQISFLQEKIKVYEMEQdkkvensnkeEIQEKETIIEELN 347
Cdd:COG4913 235 DDLERAHEALEDAREQIEllepiRELA--ERYAAARERLA-ELEYLRAALRLWFAQR----------RLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 348 TKIIEEEKKTLELKDKLTTADKLLGELQEQIVQK--------NQEIKNMKLELTNSKQKERQ------------------ 401
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARleallaalglplpasaee 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 402 ---SSEEIKQLMGTVEELQKRNHKDsqfETDIVQRmEQETQRKLEQLRAELDEM------YGQQIVQMKqELIRQHMAQM 472
Cdd:COG4913 382 faaLRAEAAALLEALEEELEALEEA---LAEAEAA-LRDLRRELRELEAEIASLerrksnIPARLLALR-DALAEALGLD 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 473 E----------EMKTRHK---GEMENALRSYS-NITVNEDQIKLMNVAINELNIKLQ-DTNSQKEKLKEELGLILEEKca 537
Cdd:COG4913 457 EaelpfvgeliEVRPEEErwrGAIERVLGGFAlTLLVPPEHYAAALRWVNRLHLRGRlVYERVRTGLPDPERPRLDPD-- 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 538 lqrqleDLVEELSFSREQIQR-ARQTIAEQesklnEAHKSLSTVEDLKAE--------IVSASESRKELELKHEAevtny 608
Cdd:COG4913 535 ------SLAGKLDFKPHPFRAwLEAELGRR-----FDYVCVDSPEELRRHpraitragQVKGNGTRHEKDDRRRI----- 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 609 kiklemlekEKNAVLDRMAESQEAELERLRTQLlfshEEELSKLKEDLEiehriNIEKLKDNLgihyKQQIDGLqnemsQ 688
Cdd:COG4913 599 ---------RSRYVLGFDNRAKLAALEAELAEL----EEELAEAEERLE-----ALEAELDAL----QERREAL-----Q 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 689 KIETMQFEKDNLitkqNQLILEISKLKDLQQSLVNSKSE--EMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQL 762
Cdd:COG4913 652 RLAEYSWDEIDV----ASAEREIAELEAELERLDASSDDlaALEEQLEELEAELEELEEEldelKGEIGRLEKELEQAEE 727
|
570 580 590
....*....|....*....|....*....|....*.
gi 119597273 763 KTELLEKQMKEKEN--------DLQEKFAQLEAENS 790
Cdd:COG4913 728 ELDELQDRLEAAEDlarlelraLLEERFAAALGDAV 763
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
189-894 |
3.86e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 189 ELEEMRVTYGTEGLQQLQ----------EFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQ 258
Cdd:COG5022 735 ALEDMRDAKLDNIATRIQrairgrylrrRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRS 814
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 259 ASETLRNSTHSSTAadllQAKQQILTHQQQLEEQDHLLedyQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQE 338
Cdd:COG5022 815 YLACIIKLQKTIKR----EKKLRETEEVEFSLKAEVLI---QKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQEL 887
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 339 KETI--IEELNTKIIEEEKKTLELKDKLTTadkllgELQEQIVQKNQEIKNMKLELTNSKQKERQSSEeikqlMGTVEEL 416
Cdd:COG5022 888 KIDVksISSLKLVNLELESEIIELKKSLSS------DLIENLEFKTELIARLKKLLNNIDLEEGPSIE-----YVKLPEL 956
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 417 QKRNHKDSQFETDIVQRM---EQETQRKlEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKT-----RHKGEMENALR 488
Cdd:COG5022 957 NKLHEVESKLKETSEEYEdllKKSTILV-REGNKANSEL--KNFKKELAELSKQYGALQESTKQlkelpVEVAELQSASK 1033
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 489 SYSNITVNEDQIKLMNVAINELNIKLQDTNSQKE--KLKEELGLILEEKCALQRQLEDLVEELSFSREQIQ--------R 558
Cdd:COG5022 1034 IISSESTELSILKPLQKLKGLLLLENNQLQARYKalKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTnrnlvkpaN 1113
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 559 ARQTIAEQESKLNEAHKSLSTVEDLKA--EIVSASESRKELELKHEAEVTNYKIKL------EMLEKEK--NAVLDRMAE 628
Cdd:COG5022 1114 VLQFIVAQMIKLNLLQEISKFLSQLVNtlEPVFQKLSVLQLELDGLFWEANLEALPspppfaALSEKRLyqSALYDEKSK 1193
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 629 SQEAELERLRTQLlfshEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLI 708
Cdd:COG5022 1194 LSSSEVNDLKNEL----IALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSID 1269
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 709 LEISKLKdlqqslvnSKSEEMTLQINELQKEIEILRQEE----KEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQ 784
Cdd:COG5022 1270 NLLSSYK--------LEEEVLPATINSLLQYINVGLFNAlrtkASSLRWKSATEVNYNSEELDDWCREFEISDVDEELEE 1341
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 785 LEAENSILKDEKKTLEDM------------LKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLN 852
Cdd:COG5022 1342 LIQAVKVLQLLKDDLNKLdelldacyslnpAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEGKDETEVHL 1421
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 119597273 853 EEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSK 894
Cdd:COG5022 1422 SEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
243-788 |
4.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 243 LTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE---KIKV 319
Cdd:TIGR00618 199 LTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEElraQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 320 YEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKE 399
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 400 RQSSEEIKQLMGTVEELQKRNH-KDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQ--MKQELIRQHmAQMEEMK 476
Cdd:TIGR00618 359 DAHEVATSIREISCQQHTLTQHiHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFrdLQGQLAHAK-KQQELQQ 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 477 TRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNS---QKEKLKEELGLILEEKCALQRQLEDLVEELSFSR 553
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 554 EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIklemLEKEKNAVLDRMAESQEaE 633
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSI----LTQCDNRSKEDIPNLQN-I 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 634 LERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNE---MSQKIETMQFEKDN---LITKQNQL 707
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKltaLHALQLTLTQERVRehaLSIRVLPK 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 708 ILEISKLKDLQQslVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEA 787
Cdd:TIGR00618 673 ELLASRQLALQK--MQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH 750
|
.
gi 119597273 788 E 788
Cdd:TIGR00618 751 Q 751
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
209-606 |
5.24e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 209 EAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQasETLRNSTHSSTAADLLQAKQQILtHQQQ 288
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELK--EELRQSREKHEELEEKYKELSAS-SEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 289 LEEQDHLL---EDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQ--EKETIIEELNTKIIEEEKKTLELKDK 363
Cdd:pfam07888 114 SEEKDALLaqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQrkEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 364 LTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQE--TQRK 441
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRdrTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 442 LEQLRAELDEMYGQqivqmkqelIRQHMAQMEEMKTRHKGEMENALRsysNITVNEDQIKLMNVAINELNIKLQDTNSQK 521
Cdd:pfam07888 274 LHQARLQAAQLTLQ---------LADASLALREGRARWAQERETLQQ---SAEADKDRIEKLSAELQRLEERLQEERMER 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 522 EKLKEELGlileekcalqrqledlvEELSFSREQIQRARQTIAEQESKLNEAHKSlstVEDLKAEIVSASESRKELELKH 601
Cdd:pfam07888 342 EKLEVELG-----------------REKDCNRVQLSESRRELQELKASLRVAQKE---KEQLQAEKQELLEYIRQLEQRL 401
|
....*
gi 119597273 602 EAEVT 606
Cdd:pfam07888 402 ETVAD 406
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
352-579 |
5.41e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.51 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 352 EEEKKTLELKDKLttaDKLLGELQEQivQKNQEIKNMKLELTNSKQKERQsseEIKQLMGTVEELQKRNHKDSqfetdiV 431
Cdd:pfam13779 510 EIAKLMQELREAL---DDYMQALAEQ--AQQNPQDLQQPDDPNAQEMTQQ---DLQRMLDRIEELARSGRRAE------A 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 432 QRMEQETQRKLEQLRAELdemyGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELN 511
Cdd:pfam13779 576 QQMLSQLQQMLENLQAGQ----PQQQQQQGQSEMQQAMDELGDLLREQQQLLDETFRQLQQQGGQQQGQPGQQGQQGQGQ 651
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119597273 512 IKLQDTNSQ-----KEKLKEELGLILEEKCALQRQLEDLVEELsfsREQIQ-RARQTIAEQESKLNEAHKSLST 579
Cdd:pfam13779 652 QPGQGGQQPgaqmpPQGGAEALGDLAERQQALRRRLEELQDEL---KELGGkEPGQALGDAGRAMRDAEEALGQ 722
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
160-657 |
5.49e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 160 QGAQDSPTHLEMMESELAGKQHEIE--------------ELNRELEEMRVTYGTEGlqqlQEFEAAIKQRDGIITQLTAN 225
Cdd:pfam01576 15 QKVKERQQKAESELKELEKKHQQLCeeknalqeqlqaetELCAEAEEMRARLAARK----QELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 226 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQilthQQQLEEQDHLLEDyqkKKED 305
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ----NSKLSKERKLLEE---RISE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 306 FTMQISFLQEKIKVYEMEQDKkvensnkeeiqeKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEI 385
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNK------------HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 386 KNMKLELTnSKQKERQSS---------------EEIKQLMGTVEELQKrnhkdsQFETDIVQRMEQETQRK-----LEQL 445
Cdd:pfam01576 232 AELRAQLA-KKEEELQAAlarleeetaqknnalKKIRELEAQISELQE------DLESERAARNKAEKQRRdlgeeLEAL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 446 RAEL----DEMYGQQIVQMKQEL------------IRQHMAQMEEMKTRHKG-------EMENALRSYSNITVN----ED 498
Cdd:pfam01576 305 KTELedtlDTTAAQQELRSKREQevtelkkaleeeTRSHEAQLQEMRQKHTQaleelteQLEQAKRNKANLEKAkqalES 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 499 QIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLS 578
Cdd:pfam01576 385 ENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVS 464
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119597273 579 TVEdlkaeivSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAelERLRTQLLFSHEEELSKLKEDLE 657
Cdd:pfam01576 465 SLE-------SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEA--KRNVERQLSTLQAQLSDMKKKLE 534
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
497-592 |
7.40e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 497 EDQIKLMNVAINELnIKLQDTNSQK--EKLKEELGLILEEKCALQRQLE---DLVEELSFSREQIQRARQTIAEQESKLN 571
Cdd:COG0542 417 ERRLEQLEIEKEAL-KKEQDEASFErlAELRDELAELEEELEALKARWEaekELIEEIQELKEELEQRYGKIPELEKELA 495
|
90 100
....*....|....*....|.
gi 119597273 572 EAHKSLSTVEDLKAEIVSASE 592
Cdd:COG0542 496 ELEEELAELAPLLREEVTEED 516
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
678-1253 |
7.44e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 678 QIDGLQNEMSQkIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEekeKGTLEQEV 757
Cdd:pfam12128 242 EFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGE---LSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 758 QELQLKTELLEKQMKEKENDLQEKFAQ-LEAENSI---LKDEKKTLEDMLKIHTPVSQE-ERLIFLDSIKSKSK------ 826
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAAdQEQLPSWqseLENLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDiagikd 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 827 --DSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELeyksk 904
Cdd:pfam12128 398 klAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER----- 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 905 LKALNEELHLQRINPTTVKMKSSVFDedktfvaetlemgevveKDTTELMEKLEVTKREKLELSQRLSDLSEQL-KQKHG 983
Cdd:pfam12128 473 IERAREEQEAANAEVERLQSELRQAR-----------------KRRDQASEALRQASRRLEERQSALDELELQLfPQAGT 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 984 EISFLNEEVKSLKQEKEQVSLRcreleiiinhnraENVQSCDtqvsslLDGVVTMTSRGAEGSVSKVNKSFgeeSKIMVE 1063
Cdd:pfam12128 536 LLHFLRKEAPDWEQSIGKVISP-------------ELLHRTD------LDPEVWDGSVGGELNLYGVKLDL---KRIDVP 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1064 DKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKS--EQNDLRLQmeaqriclslvysthvd 1141
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLR----------------- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 1142 QVREYMENEKDKALCSLKEELIFAQEE--KIKELQKIHQLELQTMKtQETGDEGKPLHLLIGKLQKAVSEECSYFLQTLC 1219
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWL-EEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
570 580 590
....*....|....*....|....*....|....
gi 119597273 1220 SVLGEYYTpALKCEVNAEDKENSGDYISENEDPE 1253
Cdd:pfam12128 736 AAIAARRS-GAKAELKALETWYKRDLASLGVDPD 768
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
172-418 |
7.54e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 172 MESELAGKQHEIEELNRELEEMRVTYGTEGLQ-------------QLQEFEAAIKQRDGIITQLTANLQQARREKDETMR 238
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqeiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 239 EFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIK 318
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 319 vyEMEQDKKVENSNKEEIQEKetiIEELNTKIIEEEKKTLELKDKLTTADKLL--GELQEQIVQKNQEIKNMKLELTNSK 396
Cdd:TIGR04523 507 --ELEEKVKDLTKKISSLKEK---IEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLK 581
|
250 260
....*....|....*....|..
gi 119597273 397 QKERQSSEEIKQLMGTVEELQK 418
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIK 603
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
515-658 |
9.14e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.81 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 515 QDTNSQKeKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDlkaEIVSASESR 594
Cdd:pfam05911 678 LKTEENK-RLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAET---QLKCMAESY 753
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119597273 595 KELELKH---EAEVTNYKIKLEMLEKE----KNAVLDRMAESQEAE--LERLRTQ--LLFSHEEELSKLKEDLEI 658
Cdd:pfam05911 754 EDLETRLtelEAELNELRQKFEALEVEleeeKNCHEELEAKCLELQeqLERNEKKesSNCDADQEDKKLQQEKEI 828
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
431-815 |
9.24e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 431 VQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELiRQHMAQMEEMKTRHKGEMENALRSYSN----ITVNE---DQIKLM 503
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGL-ESELAELDEEIERYEEQREQARETRDEadevLEEHEerrEELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 504 NVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTV--- 580
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrva 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 581 -EDLKAEIVSASESRKELELKHEAevtnykiklemlEKEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSKLKEDLE 657
Cdd:PRK02224 337 aQAHNEEAESLREDADDLEERAEE------------LREEAAELESELEEAREAVEDRREEIeeLEEEIEELRERFGDAP 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119597273 658 IEhRINIEKLKDNLgihyKQQIDGLQNEMSQKIETMQFEKDNLitKQNQLILEISKLKDLQQSLVNSkseemtlqinelq 737
Cdd:PRK02224 405 VD-LGNAEDFLEEL----REERDELREREAELEATLRTARERV--EEAEALLEAGKCPECGQPVEGS------------- 464
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119597273 738 KEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKEnDLQEkfaqLEAENSILKDEKKTLEDMLKIHTPVSQEERL 815
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVE----AEDRIERLEERREDLEELIAERRETIEEKRE 537
|
|
| |
