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Conserved domains on  [gi|190621752|gb|EDV37276|]
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uncharacterized protein Dana_GF11501 [Drosophila ananassae]

Protein Classification

Mab-21 family protein( domain architecture ID 10505530)

Mab-21 family protein, similar to Caenorhabditis elegans Mab-21 (Protein male abnormal 21) which acts in a cell autonomous fashion to specify the properties of the sensory ray and non-autonomously in the choice of hypodermal versus neuroblast cell fate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mab-21 pfam03281
Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like ...
 60-246 7.08e-40

Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


:

Pssm-ID: 460873  Cd Length: 191  Bit Score: 143.33  E-value: 7.08e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752   60 YGDNLKVAMPNEFDLVIHLVFPENDKIIVkadPRKPGNVTLDMTKVMEVigkqEHNKLVFEQLQKM---VNRNQLLCEDK 136
Cdd:pfam03281   1 YYENLKVLSPDEFDVMLPLRGPMNDLIIV---MGVPGYVVLKLTRWRYY----LHNPVGRPESLSQwleFTAEGYLSAAK 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  137 LQSWLQGVMTQALAkmgkqiKVGSVVSPLSYKKS--GPAHTIDVKGRY-EYSVDFVPAIRLKA----------------D 197
Cdd:pfam03281  74 VLSRFQSLVEKALN------TVNDSIYGLVYKREkgGPAVTLAIETSEdQYSVDLVPAIECPGiwpksarwprclkrwpS 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 190621752  198 QCVLGPQQRRHFGTTPHWdaipkPMKPPLPENISFRASYYDAEKGLLQG 246
Cdd:pfam03281 148 QKVLRKIKSEGFHLVAKS-----SPWPSSDENYSWRLSFSQAEKVLLKG 191
Mab-21_C pfam20266
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 249-347 1.84e-30

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


:

Pssm-ID: 466416  Cd Length: 102  Bit Score: 114.26  E-value: 1.84e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  249 NLKNSIRLMKRL-----RDKKNNMTNLKSYYIKTLFLWEVTKQ-DPKYWQK-PMTEIVIEMLDRLGNTLRltssKGKLLF 321
Cdd:pfam20266   1 CRKKCLRILKKLkepgkRDVKTELSKICSYHLKTLFLWECEKHpDDSDWDKeNLSDRFLGLLEELHKCLR----NGKLPH 76

                          90       100
                  ....*....|....*....|....*.
gi 190621752  322 FWDPKLDMFADLTANQRQAMFNCVSK 347
Cdd:pfam20266  77 FFIPKLNLFQSLSRKELDDLAKKLED 102
PspC_subgroup_2 super family cl41463
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 420-528 3.54e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


The actual alignment was detected with superfamily member NF033839:

Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 49.77  E-value: 3.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 420 PKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPiKPNPKPSAQKVPVPVQPNQSKPN 499
Cdd:NF033839 284 PKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKP-KPEVKPQLETPKPEVKPQPEKPK 362

                         90       100       110
                 ....*....|....*....|....*....|
gi 190621752 500 PPIKAE-SGAQPDAKNQNPSQRPGTKPQLE 528
Cdd:NF033839 363 PEVKPQpEKPKPEVKPQPETPKPEVKPQPE 392
 
Name Accession Description Interval E-value
Mab-21 pfam03281
Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like ...
 60-246 7.08e-40

Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 460873  Cd Length: 191  Bit Score: 143.33  E-value: 7.08e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752   60 YGDNLKVAMPNEFDLVIHLVFPENDKIIVkadPRKPGNVTLDMTKVMEVigkqEHNKLVFEQLQKM---VNRNQLLCEDK 136
Cdd:pfam03281   1 YYENLKVLSPDEFDVMLPLRGPMNDLIIV---MGVPGYVVLKLTRWRYY----LHNPVGRPESLSQwleFTAEGYLSAAK 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  137 LQSWLQGVMTQALAkmgkqiKVGSVVSPLSYKKS--GPAHTIDVKGRY-EYSVDFVPAIRLKA----------------D 197
Cdd:pfam03281  74 VLSRFQSLVEKALN------TVNDSIYGLVYKREkgGPAVTLAIETSEdQYSVDLVPAIECPGiwpksarwprclkrwpS 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 190621752  198 QCVLGPQQRRHFGTTPHWdaipkPMKPPLPENISFRASYYDAEKGLLQG 246
Cdd:pfam03281 148 QKVLRKIKSEGFHLVAKS-----SPWPSSDENYSWRLSFSQAEKVLLKG 191
Mab-21_C pfam20266
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 249-347 1.84e-30

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 466416  Cd Length: 102  Bit Score: 114.26  E-value: 1.84e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  249 NLKNSIRLMKRL-----RDKKNNMTNLKSYYIKTLFLWEVTKQ-DPKYWQK-PMTEIVIEMLDRLGNTLRltssKGKLLF 321
Cdd:pfam20266   1 CRKKCLRILKKLkepgkRDVKTELSKICSYHLKTLFLWECEKHpDDSDWDKeNLSDRFLGLLEELHKCLR----NGKLPH 76

                          90       100
                  ....*....|....*....|....*.
gi 190621752  322 FWDPKLDMFADLTANQRQAMFNCVSK 347
Cdd:pfam20266  77 FFIPKLNLFQSLSRKELDDLAKKLED 102
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 420-528 3.54e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 49.77  E-value: 3.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 420 PKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPiKPNPKPSAQKVPVPVQPNQSKPN 499
Cdd:NF033839 284 PKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKP-KPEVKPQLETPKPEVKPQPEKPK 362

                         90       100       110
                 ....*....|....*....|....*....|
gi 190621752 500 PPIKAE-SGAQPDAKNQNPSQRPGTKPQLE 528
Cdd:NF033839 363 PEVKPQpEKPKPEVKPQPETPKPEVKPQPE 392
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
410-537 7.68e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.62  E-value: 7.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 410 QVASSGNGAKPKDPP--TISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIkpnPKPSAQKV 487
Cdd:PRK14971 361 QLTQKGDDASGGRGPkqHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV---DPPAAVPV 437

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 190621752 488 PVPVQPNQSKPNPPIKAEsgaQPDAKNQNPSQRPGTKPQLEPAVEGKNGE 537
Cdd:PRK14971 438 NPPSTAPQAVRPAQFKEE---KKIPVSKVSSLGPSTLRPIQEKAEQATGN 484
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 395-529 8.06e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 48.61  E-value: 8.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 395 EEDSKAKAPTPKPGTQVASSGNGAKPKDPPTiSPKAKQNNALPNQNTAKAAQPNQRNPNgnaQKAAPAQPKEQAEKQPKL 474
Cdd:NF033839 285 KEPGNKKPSAPKPGMQPSPQPEKKEVKPEPE-TPKPEVKPQLEKPKPEVKPQPEKPKPE---VKPQLETPKPEVKPQPEK 360

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 190621752 475 P---IKPNP-------KPSAQKVPVPVQPNQSKPNPPIKAE-SGAQPDAKNQNPSQRPGTKPQLEP 529
Cdd:NF033839 361 PkpeVKPQPekpkpevKPQPETPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPEKPKPEVKPQPEK 426
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 383-528 8.55e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 45.14  E-value: 8.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 383 PDNSQCLQAVAAEEDSKAKAPTPKPgtQVASSGNGAKPKDPPTI------------SPKAKQNNALPNQNTAKAAQPNQR 450
Cdd:NF033839 306 EKKEVKPEPETPKPEVKPQLEKPKP--EVKPQPEKPKPEVKPQLetpkpevkpqpeKPKPEVKPQPEKPKPEVKPQPETP 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 451 NPNGNAQKAAPAQPKEQAEKQPKLPIKPNP-------KPSAQKVPVPVQPNQSKPNPPIKAE-SGAQPDAKNQNPSQRPG 522
Cdd:NF033839 384 KPEVKPQPEKPKPEVKPQPEKPKPEVKPQPekpkpevKPQPEKPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPETPKPE 463


                 ....*.
gi 190621752 523 TKPQLE 528
Cdd:NF033839 464 VKPQPE 469
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 443-528 2.77e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.60  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 443 KAAQPNQRNPNGNAQKAAP---AQPKEQAEKQPKLPI----KPNPKPSAQKVPVPVQPNQSKPNPPIKAESGA-QPDAKN 514
Cdd:NF033839 277 KGLTQDTPKEPGNKKPSAPkpgMQPSPQPEKKEVKPEpetpKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETpKPEVKP 356

                         90
                 ....*....|....
gi 190621752 515 QNPSQRPGTKPQLE 528
Cdd:NF033839 357 QPEKPKPEVKPQPE 370
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 390-526 7.93e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.45  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  390 QAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPNQNTAKAAQPN-----------QRNPN----- 453
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHtliqqtptlhpQRLPSphppl 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  454 -GNAQKAAPAQPKEQAEKQPKL--PIKPNPK-----PSAQKVPVPVQP-------NQSK-PNPPIKAESGAQPDAKNQNP 517
Cdd:pfam03154 250 qPMTQPPPPSQVSPQPLPQPSLhgQMPPMPHslqtgPSHMQHPVPPQPfpltpqsSQSQvPPGPSPAAPGQSQQRIHTPP 329


                  ....*....
gi 190621752  518 SQRPGTKPQ 526
Cdd:pfam03154 330 SQSQLQSQQ 338
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 416-526 1.89e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 40.66  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 416 NGAKPKD-PPTISPKAKQN--NALPNQNtAKAAQPNQRNPNGNAQKAApaQPKEQAEKQPKLPIKPNPKPSAQKVPvpvQ 492
Cdd:NF038329 289 DGQNGKDgLPGKDGKDGQNgkDGLPGKD-GKDGQPGKDGLPGKDGKDG--QPGKPAPKTPEVPQKPDTAPHTPKTP---Q 362

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 190621752 493 -PNQSK---PNPpikaesgaqpdaknQNPSQRPGTKPQ 526
Cdd:NF038329 363 iPGQSKdvtPAP--------------QNPSNRGLNKPQ 386
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 402-533 6.12e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 39.28  E-value: 6.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 402 APTPKPGTQVASSGNGAKPKDPPTISPKAKQNNAL-PNQNTAKAAQPNQRNPNGNAQKaaPAQPKEQAEKQPKLPIKPNP 480
Cdd:COG5180  273 PAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVaSAPPATRPVRPPGGARDPGTPR--PGQPTERPAGVPEAASDAGQ 350

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 190621752 481 KPSAQKVPVPVQPnqSKPNPPIK---AESGAQ------PDAKNQNPSQRPGTKPQLEPAVEG 533
Cdd:COG5180  351 PPSAYPPAEEAVP--GKPLEQGAprpGSSGGDgapfqpPNGAPQPGLGRRGAPGPPMGAGDL 410
 
Name Accession Description Interval E-value
Mab-21 pfam03281
Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like ...
 60-246 7.08e-40

Mab-21 protein nucleotidyltransferase domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 460873  Cd Length: 191  Bit Score: 143.33  E-value: 7.08e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752   60 YGDNLKVAMPNEFDLVIHLVFPENDKIIVkadPRKPGNVTLDMTKVMEVigkqEHNKLVFEQLQKM---VNRNQLLCEDK 136
Cdd:pfam03281   1 YYENLKVLSPDEFDVMLPLRGPMNDLIIV---MGVPGYVVLKLTRWRYY----LHNPVGRPESLSQwleFTAEGYLSAAK 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  137 LQSWLQGVMTQALAkmgkqiKVGSVVSPLSYKKS--GPAHTIDVKGRY-EYSVDFVPAIRLKA----------------D 197
Cdd:pfam03281  74 VLSRFQSLVEKALN------TVNDSIYGLVYKREkgGPAVTLAIETSEdQYSVDLVPAIECPGiwpksarwprclkrwpS 147

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 190621752  198 QCVLGPQQRRHFGTTPHWdaipkPMKPPLPENISFRASYYDAEKGLLQG 246
Cdd:pfam03281 148 QKVLRKIKSEGFHLVAKS-----SPWPSSDENYSWRLSFSQAEKVLLKG 191
Mab-21_C pfam20266
Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In ...
 249-347 1.84e-30

Mab-21 protein HhH/H2TH-like domain; This family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development.


Pssm-ID: 466416  Cd Length: 102  Bit Score: 114.26  E-value: 1.84e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  249 NLKNSIRLMKRL-----RDKKNNMTNLKSYYIKTLFLWEVTKQ-DPKYWQK-PMTEIVIEMLDRLGNTLRltssKGKLLF 321
Cdd:pfam20266   1 CRKKCLRILKKLkepgkRDVKTELSKICSYHLKTLFLWECEKHpDDSDWDKeNLSDRFLGLLEELHKCLR----NGKLPH 76

                          90       100
                  ....*....|....*....|....*.
gi 190621752  322 FWDPKLDMFADLTANQRQAMFNCVSK 347
Cdd:pfam20266  77 FFIPKLNLFQSLSRKELDDLAKKLED 102
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 420-528 3.54e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 49.77  E-value: 3.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 420 PKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPiKPNPKPSAQKVPVPVQPNQSKPN 499
Cdd:NF033839 284 PKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKP-KPEVKPQLETPKPEVKPQPEKPK 362

                         90       100       110
                 ....*....|....*....|....*....|
gi 190621752 500 PPIKAE-SGAQPDAKNQNPSQRPGTKPQLE 528
Cdd:NF033839 363 PEVKPQpEKPKPEVKPQPETPKPEVKPQPE 392
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
410-537 7.68e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.62  E-value: 7.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 410 QVASSGNGAKPKDPP--TISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIkpnPKPSAQKV 487
Cdd:PRK14971 361 QLTQKGDDASGGRGPkqHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV---DPPAAVPV 437

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 190621752 488 PVPVQPNQSKPNPPIKAEsgaQPDAKNQNPSQRPGTKPQLEPAVEGKNGE 537
Cdd:PRK14971 438 NPPSTAPQAVRPAQFKEE---KKIPVSKVSSLGPSTLRPIQEKAEQATGN 484
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 395-529 8.06e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 48.61  E-value: 8.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 395 EEDSKAKAPTPKPGTQVASSGNGAKPKDPPTiSPKAKQNNALPNQNTAKAAQPNQRNPNgnaQKAAPAQPKEQAEKQPKL 474
Cdd:NF033839 285 KEPGNKKPSAPKPGMQPSPQPEKKEVKPEPE-TPKPEVKPQLEKPKPEVKPQPEKPKPE---VKPQLETPKPEVKPQPEK 360

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 190621752 475 P---IKPNP-------KPSAQKVPVPVQPNQSKPNPPIKAE-SGAQPDAKNQNPSQRPGTKPQLEP 529
Cdd:NF033839 361 PkpeVKPQPekpkpevKPQPETPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPEKPKPEVKPQPEK 426
PHA03247 PHA03247
large tegument protein UL36; Provisional
 373-525 9.11e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 9.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  373 TPITRGIENIPDNSQCLQAVAAEEDSKAKAPTP----KPGTQVASSG--NGAKPKDPPTISPKAKQNNALPNQNTAKAAQ 446
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPggpaRPARPPTTAGppAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  447 PNQRNPngnAQKAAPAQPKEQAEKQPKLPIKPNPKPSAqKVPVPVQPNQSKPNPPIKAESGAQP--DAKNQNPSQRPGTK 524
Cdd:PHA03247 2799 PSPWDP---ADPPAAVLAPAAALPPAASPAGPLPPPTS-AQPTAPPPPPGPPPPSLPLGGSVAPggDVRRRPPSRSPAAK 2874


                  .
gi 190621752  525 P 525
Cdd:PHA03247 2875 P 2875
PHA03247 PHA03247
large tegument protein UL36; Provisional
 391-529 9.76e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 9.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  391 AVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAK-------QNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQ 463
Cdd:PHA03247 2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS 2894

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 190621752  464 PKEQAEKQPKLPIKPNPKPSAQKVPVPVQPNQSKPNPPikAESGAQPDAKnqnPSQRPGTKPQLEP 529
Cdd:PHA03247 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP--PPPPPRPQPP---LAPTTDPAGAGEP 2955
PHA03247 PHA03247
large tegument protein UL36; Provisional
 403-529 2.93e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 2.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  403 PTPkPGTQVASSGNGAKPKDPptISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPK--------- 473
Cdd:PHA03247 2720 PLP-PGPAAARQASPALPAAP--APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesre 2796

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 190621752  474 ---LPIKPNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAknqnPSQRPGTKPQLEP 529
Cdd:PHA03247 2797 slpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA----PPPPPGPPPPSLP 2851
PHA03378 PHA03378
EBNA-3B; Provisional
 383-529 3.62e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 46.60  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 383 PDNSQCLQAVAAEEDSKAKAPTPKPgtqvassgngaKPKDPPTIS--PKAKQNNALPNQNTAKAAQPnqrnPNGNAQKAA 460
Cdd:PHA03378 681 ANTMLPIQWAPGTMQPPPRAPTPMR-----------PPAAPPGRAqrPAAATGRARPPAAAPGRARP----PAAAPGRAR 745

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 461 PAQPKEQAEKQPKLPIKPNPKPSAQK-VPVPVQPNQSKPNPPIKAESGAQPdaknQNPSQRPGTKPQLEP 529
Cdd:PHA03378 746 PPAAAPGRARPPAAAPGRARPPAAAPgAPTPQPPPQAPPAPQQRPRGAPTP----QPPPQAGPTSMQLMP 811
PHA03247 PHA03247
large tegument protein UL36; Provisional
 391-534 4.02e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 4.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  391 AVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAkqnnALPNQNTAKAAQP----------------------- 447
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG----PLPPPTSAQPTAPppppgppppslplggsvapggdv 2862

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  448 NQRNPNGN--AQKAAPAQPKEQAEKQPKLPIK----PNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAKNQNPSQRP 521
Cdd:PHA03247 2863 RRRPPSRSpaAKPAAPARPPVRRLARPAVSRStesfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942

                         170
                  ....*....|...
gi 190621752  522 gTKPQLEPAVEGK 534
Cdd:PHA03247 2943 -LAPTTDPAGAGE 2954
PHA03247 PHA03247
large tegument protein UL36; Provisional
 400-525 4.65e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 4.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  400 AKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPnqnTAKAAQPNQR--NPNGNAQKAAPAQPKEQAEKQPKLPIK 477
Cdd:PHA03247 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP---AAPARPPVRRlaRPAVSRSTESFALPPDQPERPPQPQAP 2914

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 190621752  478 PNPKPSAQKvPVPVQPnQSKPNPPIKAESGAQPDAKNQNPSQRPGTKP 525
Cdd:PHA03247 2915 PPPQPQPQP-PPPPQP-QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
401-528 6.94e-05

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 45.18  E-value: 6.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 401 KAPTPKPGTQVASSGngAKPKDPPTI----SPKAKQNNALPnqnTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPI 476
Cdd:PRK12373 173 KGPVVKPGPQIGRYA--SEPAGGLTSlteeAGKARYNASKA---LAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAA 247

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 190621752 477 KPNPKP----SAQKVPVPVQPNQSKP-----NPPIKAESGAQPDAKNQNPSQRPGTKPQLE 528
Cdd:PRK12373 248 RPKSADaetnAALKTPATAPKAAAKNakapeAQPVSGTAAAEPAPKEAAKAAAAAAKPALE 308
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 383-528 8.55e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 45.14  E-value: 8.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 383 PDNSQCLQAVAAEEDSKAKAPTPKPgtQVASSGNGAKPKDPPTI------------SPKAKQNNALPNQNTAKAAQPNQR 450
Cdd:NF033839 306 EKKEVKPEPETPKPEVKPQLEKPKP--EVKPQPEKPKPEVKPQLetpkpevkpqpeKPKPEVKPQPEKPKPEVKPQPETP 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 451 NPNGNAQKAAPAQPKEQAEKQPKLPIKPNP-------KPSAQKVPVPVQPNQSKPNPPIKAE-SGAQPDAKNQNPSQRPG 522
Cdd:NF033839 384 KPEVKPQPEKPKPEVKPQPEKPKPEVKPQPekpkpevKPQPEKPKPEVKPQPEKPKPEVKPQpEKPKPEVKPQPETPKPE 463


                 ....*.
gi 190621752 523 TKPQLE 528
Cdd:NF033839 464 VKPQPE 469
PHA03247 PHA03247
large tegument protein UL36; Provisional
 391-521 1.01e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  391 AVAAEEDSKAKAPTPKPGTQVASSGNG-----AKPKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNgnAQKAAPAQPK 465
Cdd:PHA03247 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPpvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ--PPPPPQPQPP 2932

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 190621752  466 EQAEKQPKLPIKPNPKPSAQKVPVPVQpnqskPNPPIKA-ESGAQPDAKNQNPSQRP 521
Cdd:PHA03247 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAV-----PQPWLGAlVPGRVAVPRFRVPQPAP 2984
PHA03247 PHA03247
large tegument protein UL36; Provisional
 410-531 1.11e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  410 QVASSGNGAKPKDPPTISPKAKQNNALPNQNTAkaaqPNQRNPNGNAQKAAPAQPKEQAekQPKLPIKPNPKPSAQKVPV 489
Cdd:PHA03247 2542 ELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPA----PRPSEPAVTSRARRPDAPPQSA--RPRAPVDDRGDPRGPAPPS 2615

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 190621752  490 PVQPNQSKPNPPIKAESGAQPDAKNQNPSQRPG-TKPQLEPAV 531
Cdd:PHA03247 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPpERPRDDPAP 2658
PHA03247 PHA03247
large tegument protein UL36; Provisional
 398-528 1.77e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 1.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  398 SKAKAPTPKPGTQVA--SSGNGAKPKDPPtisPKAKQNNAlpnqntAKAAQPNQRNPNGNAQkAAPAQPKEQAEKQPKLP 475
Cdd:PHA03247  352 PKRRRPTWTPPSSLEdlSAGRHHPKRASL---PTRKRRSA------RHAATPFARGPGGDDQ-TRPAAPVPASVPTPAPT 421

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 190621752  476 IKPNPKPSAQKVPVPV-QPNQSKPNPPIKAESGAQPDAKNQNPSQRPGTKPQLE 528
Cdd:PHA03247  422 PVPASAPPPPATPLPSaEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALD 475
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 443-528 2.77e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 43.60  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 443 KAAQPNQRNPNGNAQKAAP---AQPKEQAEKQPKLPI----KPNPKPSAQKVPVPVQPNQSKPNPPIKAESGA-QPDAKN 514
Cdd:NF033839 277 KGLTQDTPKEPGNKKPSAPkpgMQPSPQPEKKEVKPEpetpKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETpKPEVKP 356

                         90
                 ....*....|....
gi 190621752 515 QNPSQRPGTKPQLE 528
Cdd:NF033839 357 QPEKPKPEVKPQPE 370
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 417-538 3.26e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  417 GAKPKDPPTISPKAKQNNALPNQNTAKAAQPNQrnpngnAQKAAPAQPKEQAEKQPklpikPNPKPSAQKVPVPVQPNQS 496
Cdd:PRK10263  748 IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQ------PQQPVAPQPQYQQPQQP-----VAPQPQYQQPQQPVAPQPQ 816

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 190621752  497 KPNPpikaESGAQPDAKNQNPSQRPGTKPQ---LEPAVEgKNGES 538
Cdd:PRK10263  817 YQQP----QQPVAPQPQYQQPQQPVAPQPQdtlLHPLLM-RNGDS 856
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 392-514 3.31e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.26  E-value: 3.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 392 VAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPnqntakaAQPNQRNPngnaqkAAPAQPKEQAEKQ 471
Cdd:PRK14950 353 LAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP-------PKEPVRET------ATPPPVPPRPVAP 419

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 190621752 472 PKLPIKPNPKPSA-QKVPVPVQPNQSKPNPPIKAESGAQPDAKN 514
Cdd:PRK14950 420 PVPHTPESAPKLTrAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 371-530 4.58e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 4.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 371 FNTPITRGIENIPDNSQCLQAVAAEE-------------DSKAKAPT-PKPGTQVASSGNGAKPKDPPtiSPKAKQNNAL 436
Cdd:PRK07764 552 FSTGGLARRFASPGNAEVLVTALAEElggdwqveavvgpAPGAAGGEgPPAPASSGPPEEAARPAAPA--APAAPAAPAP 629

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 437 PNQNTAKAAQPNQRNPngnAQKAAPAQPKEQAEKQPKLPIKPNPKPSAQKVPV-PVQPNQSKPNPPIKAESGAQPDAKnq 515
Cdd:PRK07764 630 AGAAAAPAEASAAPAP---GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAaPPPAPAPAAPAAPAGAAPAQPAPA-- 704

                        170
                 ....*....|....*
gi 190621752 516 nPSQRPGTKPQLEPA 530
Cdd:PRK07764 705 -PAATPPAGQADDPA 718
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
383-532 6.03e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 6.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 383 PDNSQCLQAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPkakqnnALPNQNTAKAAQPNQRNPNGNAQKAAPA 462
Cdd:PRK12323 410 PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA------AAPAAAARPAAAGPRPVAAAAAAAPARA 483

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 190621752 463 QPKEQAEKQPKLPIKPNPKPSAQKVPVPVQPNQSKPN---PPIKAESGAQPDAKNQNPSQRPGTKPQLEPAVE 532
Cdd:PRK12323 484 APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGwvaESIPDPATADPDDAFETLAPAPAAAPAPRAAAA 556
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
433-511 6.90e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 42.26  E-value: 6.90e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 190621752 433 NNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIKPNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPD 511
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 390-526 7.93e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.45  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  390 QAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPNQNTAKAAQPN-----------QRNPN----- 453
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHtliqqtptlhpQRLPSphppl 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  454 -GNAQKAAPAQPKEQAEKQPKL--PIKPNPK-----PSAQKVPVPVQP-------NQSK-PNPPIKAESGAQPDAKNQNP 517
Cdd:pfam03154 250 qPMTQPPPPSQVSPQPLPQPSLhgQMPPMPHslqtgPSHMQHPVPPQPfpltpqsSQSQvPPGPSPAAPGQSQQRIHTPP 329


                  ....*....
gi 190621752  518 SQRPGTKPQ 526
Cdd:pfam03154 330 SQSQLQSQQ 338
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 403-528 8.34e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 8.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  403 PTPKPGTQVASSGNGAKPKDP--PTISPKAKQNNALPNQNTAKAAQPNQRNPNgNAQKAAPAQPKEQAEkQPKLPIKPNP 480
Cdd:PRK10263  751 PVQQPQQPVAPQQQYQQPQQPvaPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ-YQQPQQPVAPQPQYQ-QPQQPVAPQP 828

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 190621752  481 KPSAQKVPVPVQPNQSKPNPPIKAESGAQpdaknqnPSQRPGTK-PQLE 528
Cdd:PRK10263  829 QYQQPQQPVAPQPQDTLLHPLLMRNGDSR-------PLHKPTTPlPSLD 870
PRK10927 PRK10927
cell division protein FtsN;
432-535 1.24e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 41.20  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 432 QNNALP-NQNTakaaqPNQRNPNGNAQKAAP----AQPKEQAEKQPKLPIKPNPKpSAQKVPVPVQPNQSKP-------- 498
Cdd:PRK10927 135 QLVEVPwNEQT-----PEQRQQTLQRQRQAQqlaeQQRLAQQSRTTEQSWQQQTR-TSQAAPVQAQPRQSKPastqqpyq 208

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 190621752 499 ---NPPikAESGAQPDAKNQNPSQRPGTKPQlePAVEGKN 535
Cdd:PRK10927 209 dllQTP--AHTTAQSKPQQAAPVTRAADAPK--PTAEKKD 244
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 379-539 1.60e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 41.12  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 379 IENIPDNSQCLQAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPP----TISPKAKQNNALPNQNTAKAAQPNQ----- 449
Cdd:PRK13108 291 VVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEvaevTDEVAAESVVQVADRDGESTPAVEEtsead 370

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 450 --RNPNGNAQKAAPAQPKEQAEKQPKLPIKPNPKPSAqkvpvpvQPNQSKPNPPIKAESGAQPDAKNQNPSQRPGTKPQl 527
Cdd:PRK13108 371 ieREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASE-------AHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA- 442

                        170
                 ....*....|..
gi 190621752 528 EPAVEGKNGESS 539
Cdd:PRK13108 443 EPDGIRRQDDFS 454
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 416-526 1.89e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 40.66  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 416 NGAKPKD-PPTISPKAKQN--NALPNQNtAKAAQPNQRNPNGNAQKAApaQPKEQAEKQPKLPIKPNPKPSAQKVPvpvQ 492
Cdd:NF038329 289 DGQNGKDgLPGKDGKDGQNgkDGLPGKD-GKDGQPGKDGLPGKDGKDG--QPGKPAPKTPEVPQKPDTAPHTPKTP---Q 362

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 190621752 493 -PNQSK---PNPpikaesgaqpdaknQNPSQRPGTKPQ 526
Cdd:NF038329 363 iPGQSKdvtPAP--------------QNPSNRGLNKPQ 386
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 389-519 2.07e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 389 LQAVAAEEDSKAKAPTPKPGTQVASSGNGAKPkdPPTISPKAKQNNALPNQNTAKAAQPnqrnpngnAQKAAPAQPKEQA 468
Cdd:PRK07764 375 LARLERLERRLGVAGGAGAPAAAAPSAAAAAP--AAAPAPAAAAPAAAAAPAPAAAPQP--------APAPAPAPAPPSP 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 190621752 469 EKQPKLPIKPN----PKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAKNQNPSQ 519
Cdd:PRK07764 445 AGNAPAGGAPSpppaAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 398-530 2.08e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.87  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 398 SKAKAPTPKPGTQVASSGNGAKPkDPptispkakqnnalpnqntakAAQPNQRNpngnAQKAAPA-QPKEQAEKQPKLPI 476
Cdd:PHA03269  18 IIANLNTNIPIPELHTSAATQKP-DP--------------------APAPHQAA----SRAPDPAvAPTSAASRKPDLAQ 72

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 190621752 477 KPNPKPSAQKVPVPVQPNQS--KPNPPIKAESGAQPdakNQNPSQRPGTKPQLEPA 530
Cdd:PHA03269  73 APTPAASEKFDPAPAPHQAAsrAPDPAVAPQLAAAP---KPDAAEAFTSAAQAHEA 125
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
400-516 2.95e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.03  E-value: 2.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  400 AKAPTPKPGTQVASSGNGakpkdpPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIKPN 479
Cdd:pfam05539 225 TTSSNPEPQTEPPPSQRG------PSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQET 298

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 190621752  480 PKPSaqkvPVPVQPNQSKPNPPIKAESGAQPDAKNQN 516
Cdd:pfam05539 299 GRPT----PRPTATTQSGSSPPHSSPPGVQANPTTQN 331
PRK11633 PRK11633
cell division protein DedD; Provisional
 396-534 2.98e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.22  E-value: 2.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 396 EDSKAKAP-TPKPGTQvassgngakpkDPPTISPKAKQnnALPnqntakaAQPnqrnPNGNAQKAAPAQPKEQAEKQPKL 474
Cdd:PRK11633  35 QDEFAAIPlVPKPGDR-----------DEPDMMPAATQ--ALP-------TQP----PEGAAEAVRAGDAAAPSLDPATV 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 475 PikPNPKPSAQKvPVPVQPNQSKPNPPIKAESGAQPDAKnqnpsQRPGTKPQLEPAVEGK 534
Cdd:PRK11633  91 A--PPNTPVEPE-PAPVEPPKPKPVEKPKPKPKPQQKVE-----APPAPKPEPKPVVEEK 142
PRK10905 PRK10905
cell division protein DamX; Validated
 383-534 2.99e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 39.92  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 383 PDNSQCLQAVAAEED--------SKAKAPTPKPGTQVASSGNGAKPKD---PPTIS----------PKAKQ--------N 433
Cdd:PRK10905  23 PSTSSSDQTASGEKSidlagnatDQANGVQPAPGTTSAEQTAGNTQQDvslPPISStptqgqtpvaTDGQQrvevqgdlN 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 434 NALP---NQNTAKAAQPNQRNP----------NGNAQKAAPAQPKE-------QAEKQPKL-PIKPNPKPSAQKVPVPVQ 492
Cdd:PRK10905 103 NALTqpqNQQQLNNVAVNSTLPtepatvapvrNGNASRQTAKTQTAerpattrPARKQAVIePKKPQATAKTEPKPVAQT 182

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 190621752 493 PNQSKPNPPIK------AESGAQPDA-KNQNPSQRPG-TKPQLEPAVEGK 534
Cdd:PRK10905 183 PKRTEPAAPVAstkapaATSTPAPKEtATTAPVQTASpAQTTATPAAGGK 232
PRK13808 PRK13808
adenylate kinase; Provisional
 375-524 3.57e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.87  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 375 ITRGIENIpdnsqcLQAV-AAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPNQNTAKAAQpnqrNPN 453
Cdd:PRK13808 183 VTREIGRV------LAAVgAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAA----KKA 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 190621752 454 GNAQKAAPAQPKEQAEKQPKLPIKPNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAKNQNPSQRPGTK 524
Cdd:PRK13808 253 KKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGK 323
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 389-512 3.98e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 3.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 389 LQAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPkeQA 468
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA--AP 462

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 190621752 469 EKQPKLPIKPNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDA 512
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 435-517 6.11e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 6.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 435 ALPNQNTAKAAQPNQRNPN-GNAQKAAPAQPKEQAEKQPKLPIKPN--PKPSAQkvPVPVQPNQSKPNPPIKAESGAQPD 511
Cdd:PRK14950 366 PQPAKPTAAAPSPVRPTPApSTRPKAAAAANIPPKEPVRETATPPPvpPRPVAP--PVPHTPESAPKLTRAAIPVDEKPK 443


                 ....*.
gi 190621752 512 AKNQNP 517
Cdd:PRK14950 444 YTPPAP 449
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 402-533 6.12e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 39.28  E-value: 6.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 402 APTPKPGTQVASSGNGAKPKDPPTISPKAKQNNAL-PNQNTAKAAQPNQRNPNGNAQKaaPAQPKEQAEKQPKLPIKPNP 480
Cdd:COG5180  273 PAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVaSAPPATRPVRPPGGARDPGTPR--PGQPTERPAGVPEAASDAGQ 350

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 190621752 481 KPSAQKVPVPVQPnqSKPNPPIK---AESGAQ------PDAKNQNPSQRPGTKPQLEPAVEG 533
Cdd:COG5180  351 PPSAYPPAEEAVP--GKPLEQGAprpGSSGGDgapfqpPNGAPQPGLGRRGAPGPPMGAGDL 410
PLN02226 PLN02226
2-oxoglutarate dehydrogenase E2 component
 360-539 7.11e-03

2-oxoglutarate dehydrogenase E2 component


Pssm-ID: 177871 [Multi-domain]  Cd Length: 463  Bit Score: 38.97  E-value: 7.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 360 TEDIVKRVQTYFNTPITRG-----IENIPDNSQCLQAVAAEEDSKAKAPTPKPGTQVASSgngAKPKDPPTISPKAKQNN 434
Cdd:PLN02226  88 SGDTVEAVVPHMGESITDGtlatfLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQE---FLVKEGDTVEPGTKVAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 435 ALPNQNTAKAAQPNQRNPNGNAQKAAPaqpkeqaekqpklPIKPNPKPSAQKVPVPVQPNQSKPNPPIKaESGAQPDAKN 514
Cdd:PLN02226 165 ISKSEDAASQVTPSQKIPETTDPKPSP-------------PAEDKQKPKVESAPVAEKPKAPSSPPPPK-QSAKEPQLPP 230

                        170       180
                 ....*....|....*....|....*.
gi 190621752 515 QNPSQR-PGTKPQLEPAVEGKNGESS 539
Cdd:PLN02226 231 KERERRvPMTRLRKRVATRLKDSQNT 256
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 401-533 7.44e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.08  E-value: 7.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 401 KAPTPKPGTQVASSGNGAKPKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIKPNP 480
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 190621752 481 KPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAKNQNPSQRPGTKPQLEPAVEG 533
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPV 494
flhF PRK06995
flagellar biosynthesis protein FlhF;
389-505 7.55e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 38.79  E-value: 7.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 389 LQAVAAEEDSKAKAPTPKPGTQVASSGNGAKPKDPPtispkAKQNNALPNQNTAKAAQPNQRNPngnAQKAAPAQ----P 464
Cdd:PRK06995  48 LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEP-----APWLVEHAKRLTAQREQLVARAA---APAAPEAQapaaP 119

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 190621752 465 KEQAEKQPKLPIKPNPKPSAQKVPVPvQPNQSKPNPPIKAE 505
Cdd:PRK06995 120 AERAAAENAARRLARAAAAAPRPRVP-ADAAAAVADAVKAR 159
motB PRK05996
MotB family protein;
389-532 7.60e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 38.91  E-value: 7.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752 389 LQAVAAEEDSKAKAPTPKPGtqvASSGNGAK-PKDPPTISPKAKQNNALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQ 467
Cdd:PRK05996 151 QANVSAKGDGGAAQSGPATG---ADGGEAYRdPFDPDFWSKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPL 227

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 190621752 468 AEKQPKLPIKPNPK-PSAQKVPVPVQPNQS------KPNPPIKAESGAQPDAKNQnpSQRPGTKPQLEPAVE 532
Cdd:PRK05996 228 PQAQPKKAATEEELiADAKKAATGEPAANAakaakpEPMPDDQQKEAEQLQAAIA--QAIGGVAGKLAEGVT 297
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 413-497 9.02e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.10  E-value: 9.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  413 SSGNGAKPKDPPTISPKAKQnnALPNQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIKPNPKPSAQKVPVPVQ 492
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAAS--APAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114


                  ....*
gi 190621752  493 PNQSK 497
Cdd:PRK12270  115 DEVTP 119
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 380-527 9.11e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 38.86  E-value: 9.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  380 ENIPDnsqcLQAVA-----AEEDSKAKAPTPKPGTQVASSGNG-----------------AKPKDPPTISPKAKQNNALP 437
Cdd:pfam09770 151 EPIPD----LQVDAslwgvAPKKAAAPAPAPQPAAQPASLPAPsrkmmsleeveaamraqAKKPAQQPAPAPAQPPAAPP 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 190621752  438 NQNTAKAAQPNQRNPNGNAQKAAPAQPKEQAEKQPKLPIKPNPKPSAQKVPVPVQPNQSKPNPPIKAESGAQPDAKNQNP 517
Cdd:pfam09770 227 AQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNP 306

                         170
                  ....*....|
gi 190621752  518 SQRPGTKPQL 527
Cdd:pfam09770 307 NRLSAARVGY 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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