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Conserved domains on  [gi|386907439|gb|EIJ72150|]
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hypothetical protein HMPREF1052_2059 [Pasteurella bettyae CCUG 2042]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PBECR4 super family cl40103
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the ...
 13-132 7.06e-09

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.


The actual alignment was detected with superfamily member pfam18813:

Pssm-ID: 436757  Cd Length: 185  Bit Score: 52.39  E-value: 7.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386907439   13 IIEDAAKFFNNHFINKKVIYKT---KNQEISIIFKRSNFMHLCSI----RYVDGATEFFKAAISGKLALSKMSVKSDGTT 85
Cdd:pfam18813   1 IIQEAAKAYKENLLNIEYLFVYrknKLKYLEVRFSKENFPHLTGLlklkRTRLSAEKFYDDILSGKLTEEDIKKSNDGTT 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 386907439   86 FLKLSLLKSVNSLLSPEITLTE-GAIYLNLHFDKALRTKKQIFALTLI 132
Cdd:pfam18813  81 KSKLDVLPELMEILDSNSFLFEfVNDFSKIKADYLIKTEDENGYIDLG 128
 
Name Accession Description Interval E-value
PBECR4 pfam18813
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the ...
 13-132 7.06e-09

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.


Pssm-ID: 436757  Cd Length: 185  Bit Score: 52.39  E-value: 7.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386907439   13 IIEDAAKFFNNHFINKKVIYKT---KNQEISIIFKRSNFMHLCSI----RYVDGATEFFKAAISGKLALSKMSVKSDGTT 85
Cdd:pfam18813   1 IIQEAAKAYKENLLNIEYLFVYrknKLKYLEVRFSKENFPHLTGLlklkRTRLSAEKFYDDILSGKLTEEDIKKSNDGTT 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 386907439   86 FLKLSLLKSVNSLLSPEITLTE-GAIYLNLHFDKALRTKKQIFALTLI 132
Cdd:pfam18813  81 KSKLDVLPELMEILDSNSFLFEfVNDFSKIKADYLIKTEDENGYIDLG 128
 
Name Accession Description Interval E-value
PBECR4 pfam18813
phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the ...
 13-132 7.06e-09

phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4; A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.


Pssm-ID: 436757  Cd Length: 185  Bit Score: 52.39  E-value: 7.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386907439   13 IIEDAAKFFNNHFINKKVIYKT---KNQEISIIFKRSNFMHLCSI----RYVDGATEFFKAAISGKLALSKMSVKSDGTT 85
Cdd:pfam18813   1 IIQEAAKAYKENLLNIEYLFVYrknKLKYLEVRFSKENFPHLTGLlklkRTRLSAEKFYDDILSGKLTEEDIKKSNDGTT 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 386907439   86 FLKLSLLKSVNSLLSPEITLTE-GAIYLNLHFDKALRTKKQIFALTLI 132
Cdd:pfam18813  81 KSKLDVLPELMEILDSNSFLFEfVNDFSKIKADYLIKTEDENGYIDLG 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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