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Conserved domains on  [gi|553680609|gb|ESD97286|]
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adhesin biosynthesis transcription regulatory protein [Escherichia coli 908616]

Protein Classification

adhesin biosynthesis transcription regulatory family protein( domain architecture ID 10505709)

adhesin biosynthesis transcription regulatory family protein similar to major pilu subunit operon regulatory protein PapB which may act as both a positive and a negative regulator of pap transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PapB pfam03333
Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, ...
 14-88 1.90e-36

Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, FanB, and AfaA.


:

Pssm-ID: 377022  Cd Length: 91  Bit Score: 118.17  E-value: 1.90e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 553680609  14 ELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFY 88
Cdd:pfam03333 17 YLLPGSVSEEHFWLLIEISSIHSEKVINALRDYLVDGYSRKEVCERHNVNNGYFSISLGRLQRISQIVARLVPYY 91
 
Name Accession Description Interval E-value
PapB pfam03333
Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, ...
 14-88 1.90e-36

Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, FanB, and AfaA.


Pssm-ID: 377022  Cd Length: 91  Bit Score: 118.17  E-value: 1.90e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 553680609  14 ELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFY 88
Cdd:pfam03333 17 YLLPGSVSEEHFWLLIEISSIHSEKVINALRDYLVDGYSRKEVCERHNVNNGYFSISLGRLQRISQIVARLVPYY 91
PRK15215 PRK15215
fimbriae biosynthesis regulatory protein; Provisional
 14-89 3.08e-19

fimbriae biosynthesis regulatory protein; Provisional


Pssm-ID: 185137  Cd Length: 100  Bit Score: 75.06  E-value: 3.08e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 553680609  14 ELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFYR 89
Cdd:PRK15215  25 ALIPAKVNEEHFWLLIGISSIHSEKIIQALRDYLVFGVSRKDVCERYEVNNGYFSTSLNRLSRISQAAAQMVVYYS 100
 
Name Accession Description Interval E-value
PapB pfam03333
Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, ...
 14-88 1.90e-36

Adhesin biosynthesis transcription regulatory protein; This family includes PapB, DaaA, FanA, FanB, and AfaA.


Pssm-ID: 377022  Cd Length: 91  Bit Score: 118.17  E-value: 1.90e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 553680609  14 ELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFY 88
Cdd:pfam03333 17 YLLPGSVSEEHFWLLIEISSIHSEKVINALRDYLVDGYSRKEVCERHNVNNGYFSISLGRLQRISQIVARLVPYY 91
PRK15215 PRK15215
fimbriae biosynthesis regulatory protein; Provisional
 14-89 3.08e-19

fimbriae biosynthesis regulatory protein; Provisional


Pssm-ID: 185137  Cd Length: 100  Bit Score: 75.06  E-value: 3.08e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 553680609  14 ELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFYR 89
Cdd:PRK15215  25 ALIPAKVNEEHFWLLIGISSIHSEKIIQALRDYLVFGVSRKDVCERYEVNNGYFSTSLNRLSRISQAAAQMVVYYS 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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