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Conserved domains on  [gi|611291608|dbj|GAJ40214|]
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transcription attenuation protein MtrB [Parageobacillus caldoxylosilyticus NBRC 107762]

Protein Classification

trp RNA-binding attenuation protein MtrB( domain architecture ID 10014152)

trp RNA-binding attenuation protein MtrB is required for transcription attenuation control in the trp operon

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 4.70e-48

trp RNA-binding attenuation protein MtrB;


:

Pssm-ID: 183917  Cd Length: 75  Bit Score: 146.40  E-value: 4.70e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 611291608  1 MYVNSDYVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGEIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 4.70e-48

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 146.40  E-value: 4.70e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 611291608  1 MYVNSDYVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGEIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
4-71 1.84e-44

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 137.08  E-value: 1.84e-44
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 611291608   4 NSDYVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGEIESE 71
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 4.70e-48

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 146.40  E-value: 4.70e-48
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 611291608  1 MYVNSDYVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGEIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
4-71 1.84e-44

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 137.08  E-value: 1.84e-44
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 611291608   4 NSDYVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGEIESE 71
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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