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Conserved domains on  [gi|1931045920|dbj|GHP01722|]
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NADH dehydrogenase-like protein [Pycnococcus provasolii]

Protein Classification

NAD(P)H-binding domain containing protein( domain architecture ID 1001497)

NAD(P)H-binding domain containing protein similar to the mitochondrial internal alternative NAD(P)H-ubiquinone oxidoreductase A, an NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH, but does not translocate protons across the inner mitochondrial membrane

EC:  1.6.-.-
Gene Ontology:  GO:0003959|GO:0016491
PubMed:  8805537

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00318 super family cl33177
NADH dehydrogenase-like protein; Provisional
 28-460 8.43e-156

NADH dehydrogenase-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00318:

Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 448.45  E-value: 8.43e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  28 AALSLPRVVILGTGWAGARLARDLDCKTsYDLTIVSPRNHMVFTPLLASAAVGTLEITSVIEPIRylqPDLGNPKNHYYA 107
Cdd:PTZ00318    6 ARLKKPNVVVLGTGWAGAYFVRNLDPKK-YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVR---PALAKLPNRYLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 108 GKAKGVDVAKKVIVCECADGHEY------EVKFDKLAVCTGALGTTFGVPGVDEHTFPLRDATHAFRIRERLLTNVALAS 181
Cdd:PTZ00318   82 AVVYDVDFEEKRVKCGVVSKSNNanvntfSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 182 VPSRTREERKKLLQTVIVGGGPTGVEFAGELASFIRETMRKAHPEACADMKVTLIEA-NELLGSFDGSLRKYAASKLTQG 260
Cdd:PTZ00318  162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAgSEVLGSFDQALRKYGQRRLRRL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 261 GVNIV-KGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGPTPFMSSLPFMLSKGGRLAVNDRLNVfdkatgEVCADVFALG 339
Cdd:PTZ00318  242 GVDIRtKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRV------KPIPNVFALG 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 340 DCASNSETPLPPLAQVAEQQGKFVAKLLNAEareggFRLDESASTFKYLHLGSMAALTTGEAVIELGKKDSGGSLltmtg 419
Cdd:PTZ00318  316 DCAANEERPLPTLAQVASQQGVYLAKEFNNE-----LKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFK----- 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1931045920 420 isSWLAWRSAYLTRLGTWRSRFHVAMDWLTSMVFGRSLSRI 460
Cdd:PTZ00318  386 --ALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424
 
Name Accession Description Interval E-value
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 28-460 8.43e-156

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 448.45  E-value: 8.43e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  28 AALSLPRVVILGTGWAGARLARDLDCKTsYDLTIVSPRNHMVFTPLLASAAVGTLEITSVIEPIRylqPDLGNPKNHYYA 107
Cdd:PTZ00318    6 ARLKKPNVVVLGTGWAGAYFVRNLDPKK-YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVR---PALAKLPNRYLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 108 GKAKGVDVAKKVIVCECADGHEY------EVKFDKLAVCTGALGTTFGVPGVDEHTFPLRDATHAFRIRERLLTNVALAS 181
Cdd:PTZ00318   82 AVVYDVDFEEKRVKCGVVSKSNNanvntfSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 182 VPSRTREERKKLLQTVIVGGGPTGVEFAGELASFIRETMRKAHPEACADMKVTLIEA-NELLGSFDGSLRKYAASKLTQG 260
Cdd:PTZ00318  162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAgSEVLGSFDQALRKYGQRRLRRL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 261 GVNIV-KGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGPTPFMSSLPFMLSKGGRLAVNDRLNVfdkatgEVCADVFALG 339
Cdd:PTZ00318  242 GVDIRtKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRV------KPIPNVFALG 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 340 DCASNSETPLPPLAQVAEQQGKFVAKLLNAEareggFRLDESASTFKYLHLGSMAALTTGEAVIELGKKDSGGSLltmtg 419
Cdd:PTZ00318  316 DCAANEERPLPTLAQVASQQGVYLAKEFNNE-----LKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFK----- 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1931045920 420 isSWLAWRSAYLTRLGTWRSRFHVAMDWLTSMVFGRSLSRI 460
Cdd:PTZ00318  386 --ALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
33-445 2.34e-101

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 307.83  E-value: 2.34e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  33 PRVVILGTGWAGARLARDL--DCKTSYDLTIVSPRNHMVFTPLLASAAVGTLEITSVIEPIRylqpDLGNPKN-HYYAGK 109
Cdd:COG1252     2 KRIVIVGGGFAGLEAARRLrkKLGGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLR----ELLRRAGvRFIQGE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 110 AKGVDVAKKVIVCecADGHEYEvkFDKLAVCTGALGTTFGVPGVDEHTFPLRDATHAFRIRERLLTNVALAsvpsrtreE 189
Cdd:COG1252    78 VTGIDPEARTVTL--ADGRTLS--YDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA--------E 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 190 RKKLLQTVIVGGGPTGVEFAGELASFIRETMRKAHPeACADMKVTLIEA-NELLGSFDGSLRKYAASKLTQGGVNIVKG- 267
Cdd:COG1252   146 RRRLLTIVVVGGGPTGVELAGELAELLRKLLRYPGI-DPDKVRITLVEAgPRILPGLGEKLSEAAEKELEKRGVEVHTGt 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 268 IVQRVTDGAVELKDGTTIPTGLIVWSTGVGPTPFMSSLPFMLSKGGRLAVNDRLNVFDkatgevCADVFALGDCAS---N 344
Cdd:COG1252   225 RVTEVDADGVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPG------HPNVFAIGDCAAvpdP 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 345 SETPLPPLAQVAEQQGKFVAKLLNAEAReggfrlDESASTFKYLHLGSMAALTTGEAVIELGKkdsggslLTMTGISSWL 424
Cdd:COG1252   299 DGKPVPKTAQAAVQQAKVLAKNIAALLR------GKPLKPFRYRDKGCLASLGRGAAVADVGG-------LKLSGFLAWL 365

                         410       420
                  ....*....|....*....|.
gi 1931045920 425 AWRSAYLTRLGTWRSRFHVAM 445
Cdd:COG1252   366 LKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 33-360 6.99e-39

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 142.46  E-value: 6.99e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  33 PRVVILGTGWAGARLARDLDcKTSYDLTIVSPRNHMV-FTPLLASAAVGTLEitsVIEPIRYLQPDLGNPKNH------- 104
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLA-QLGGKVTLIEDEGTCPyGGCVLSKALLGAAE---APEIASLWADLYKRKEEVvkklnng 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 105 ---YYAGKAKGVDVAKKVIVCECA-DGHEYEVKFDKLAVCTGALGTTFGVPGVDEH-TFPLRDATHAFRIRERLLtnval 179
Cdd:pfam07992  77 ievLLGTEVVSIDPGAKKVVLEELvDGDGETITYDRLVIATGARPRLPPIPGVELNvGFLVRTLDSAEALRLKLL----- 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 180 asvpsrtreeRKKLlqtVIVGGGPTGVEFAGELASFIREtmrkahpeacadmkVTLIEANE-LLGSFDGSLRKYAASKLT 258
Cdd:pfam07992 152 ----------PKRV---VVVGGGYIGVELAAALAKLGKE--------------VTLIEALDrLLRAFDEEISAALEKALE 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 259 QGGVNI-----VKGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGP-TPFMSSLPFMLSKGGRLAVNDRLNVFDKatgevc 332
Cdd:pfam07992 205 KNGVEVrlgtsVKEIIGDGDGVEVILKDGTEIDADLVVVAIGRRPnTELLEAAGLELDERGGIVVDEYLRTSVP------ 278

                         330       340
                  ....*....|....*....|....*...
gi 1931045920 333 aDVFALGDCASNSetplPPLAQVAEQQG 360
Cdd:pfam07992 279 -GIYAAGDCRVGG----PELAQNAVAQG 301
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
 35-373 2.75e-09

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 59.46  E-value: 2.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  35 VVILGTGWAGARLARDLDCKT--SYDLTIVSPRNHMVFTPLLasaavgtleITSVIEPIRYLQpDLGNPKNHYYAG---- 108
Cdd:TIGR02374   1 LVLVGNGMAGHRCIEEVLKLNrhMFEITIFGEEPHPNYNRIL---------LSSVLQGEADLD-DITLNSKDWYEKhgit 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 109 -----KAKGVDVAKKVIVCECADGHEYevkfDKLAVCTGALGTTFGVPGVDehtfplRDATHAFRIRERLLTNVALAsvp 183
Cdd:TIGR02374  71 lytgeTVIQIDTDQKQVITDAGRTLSY----DKLILATGSYPFILPIPGAD------KKGVYVFRTIEDLDAIMAMA--- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 184 srtreerKKLLQTVIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIEANELL--GSFDGSLRKYAASKLTQGG 261
Cdd:TIGR02374 138 -------QRFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLmaKQLDQTAGRLLQRELEQKG 196

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 262 VNIV--KGIVQRVTDGAVE---LKDGTTIPTGLIVWSTGVGPTPFM---SSLPFmlskGGRLAVNDRLNVFDkatgevcA 333
Cdd:TIGR02374 197 LTFLleKDTVEIVGATKADrirFKDGSSLEADLIVMAAGIRPNDELavsAGIKV----NRGIIVNDSMQTSD-------P 265

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1931045920 334 DVFALGDCASNSETPLPPLAQVAEQQGKFVAKLLNAEARE 373
Cdd:TIGR02374 266 DIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEE 305
 
Name Accession Description Interval E-value
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 28-460 8.43e-156

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 448.45  E-value: 8.43e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  28 AALSLPRVVILGTGWAGARLARDLDCKTsYDLTIVSPRNHMVFTPLLASAAVGTLEITSVIEPIRylqPDLGNPKNHYYA 107
Cdd:PTZ00318    6 ARLKKPNVVVLGTGWAGAYFVRNLDPKK-YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVR---PALAKLPNRYLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 108 GKAKGVDVAKKVIVCECADGHEY------EVKFDKLAVCTGALGTTFGVPGVDEHTFPLRDATHAFRIRERLLTNVALAS 181
Cdd:PTZ00318   82 AVVYDVDFEEKRVKCGVVSKSNNanvntfSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 182 VPSRTREERKKLLQTVIVGGGPTGVEFAGELASFIRETMRKAHPEACADMKVTLIEA-NELLGSFDGSLRKYAASKLTQG 260
Cdd:PTZ00318  162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAgSEVLGSFDQALRKYGQRRLRRL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 261 GVNIV-KGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGPTPFMSSLPFMLSKGGRLAVNDRLNVfdkatgEVCADVFALG 339
Cdd:PTZ00318  242 GVDIRtKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRV------KPIPNVFALG 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 340 DCASNSETPLPPLAQVAEQQGKFVAKLLNAEareggFRLDESASTFKYLHLGSMAALTTGEAVIELGKKDSGGSLltmtg 419
Cdd:PTZ00318  316 DCAANEERPLPTLAQVASQQGVYLAKEFNNE-----LKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFK----- 385

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1931045920 420 isSWLAWRSAYLTRLGTWRSRFHVAMDWLTSMVFGRSLSRI 460
Cdd:PTZ00318  386 --ALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
33-445 2.34e-101

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 307.83  E-value: 2.34e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  33 PRVVILGTGWAGARLARDL--DCKTSYDLTIVSPRNHMVFTPLLASAAVGTLEITSVIEPIRylqpDLGNPKN-HYYAGK 109
Cdd:COG1252     2 KRIVIVGGGFAGLEAARRLrkKLGGDAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLR----ELLRRAGvRFIQGE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 110 AKGVDVAKKVIVCecADGHEYEvkFDKLAVCTGALGTTFGVPGVDEHTFPLRDATHAFRIRERLLTNVALAsvpsrtreE 189
Cdd:COG1252    78 VTGIDPEARTVTL--ADGRTLS--YDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA--------E 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 190 RKKLLQTVIVGGGPTGVEFAGELASFIRETMRKAHPeACADMKVTLIEA-NELLGSFDGSLRKYAASKLTQGGVNIVKG- 267
Cdd:COG1252   146 RRRLLTIVVVGGGPTGVELAGELAELLRKLLRYPGI-DPDKVRITLVEAgPRILPGLGEKLSEAAEKELEKRGVEVHTGt 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 268 IVQRVTDGAVELKDGTTIPTGLIVWSTGVGPTPFMSSLPFMLSKGGRLAVNDRLNVFDkatgevCADVFALGDCAS---N 344
Cdd:COG1252   225 RVTEVDADGVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPG------HPNVFAIGDCAAvpdP 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 345 SETPLPPLAQVAEQQGKFVAKLLNAEAReggfrlDESASTFKYLHLGSMAALTTGEAVIELGKkdsggslLTMTGISSWL 424
Cdd:COG1252   299 DGKPVPKTAQAAVQQAKVLAKNIAALLR------GKPLKPFRYRDKGCLASLGRGAAVADVGG-------LKLSGFLAWL 365

                         410       420
                  ....*....|....*....|.
gi 1931045920 425 AWRSAYLTRLGTWRSRFHVAM 445
Cdd:COG1252   366 LKRAIHLYFLPGFRGRLRVLL 386
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 33-360 6.99e-39

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 142.46  E-value: 6.99e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  33 PRVVILGTGWAGARLARDLDcKTSYDLTIVSPRNHMV-FTPLLASAAVGTLEitsVIEPIRYLQPDLGNPKNH------- 104
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLA-QLGGKVTLIEDEGTCPyGGCVLSKALLGAAE---APEIASLWADLYKRKEEVvkklnng 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 105 ---YYAGKAKGVDVAKKVIVCECA-DGHEYEVKFDKLAVCTGALGTTFGVPGVDEH-TFPLRDATHAFRIRERLLtnval 179
Cdd:pfam07992  77 ievLLGTEVVSIDPGAKKVVLEELvDGDGETITYDRLVIATGARPRLPPIPGVELNvGFLVRTLDSAEALRLKLL----- 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 180 asvpsrtreeRKKLlqtVIVGGGPTGVEFAGELASFIREtmrkahpeacadmkVTLIEANE-LLGSFDGSLRKYAASKLT 258
Cdd:pfam07992 152 ----------PKRV---VVVGGGYIGVELAAALAKLGKE--------------VTLIEALDrLLRAFDEEISAALEKALE 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 259 QGGVNI-----VKGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGP-TPFMSSLPFMLSKGGRLAVNDRLNVFDKatgevc 332
Cdd:pfam07992 205 KNGVEVrlgtsVKEIIGDGDGVEVILKDGTEIDADLVVVAIGRRPnTELLEAAGLELDERGGIVVDEYLRTSVP------ 278

                         330       340
                  ....*....|....*....|....*...
gi 1931045920 333 aDVFALGDCASNSetplPPLAQVAEQQG 360
Cdd:pfam07992 279 -GIYAAGDCRVGG----PELAQNAVAQG 301
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 109-377 9.75e-27

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 109.90  E-value: 9.75e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 109 KAKGVDVAKKVIVCEcaDGHEYEvkFDKLAVCTGALGTTFGVPGVD-EHTFPLRDATHAFRIRERLltnvalasvpsrtr 187
Cdd:COG0446    58 EVTAIDPEAKTVTLR--DGETLS--YDKLVLATGARPRPPPIPGLDlPGVFTLRTLDDADALREAL-------------- 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 188 eERKKLLQTVIVGGGPTGVEFAgelasfirETMRKAhpeacaDMKVTLIEANE-LLGSFDGSLRKYAASKLTQGGVNIVK 266
Cdd:COG0446   120 -KEFKGKRAVVIGGGPIGLELA--------EALRKR------GLKVTLVERAPrLLGVLDPEMAALLEEELREHGVELRL 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 267 GI-VQRVTDG---AVELKDGTTIPTGLIVWSTGVGP-TPFMSSLPFMLSKGGRLAVNDRLNVFDKatgevcaDVFALGDC 341
Cdd:COG0446   185 GEtVVAIDGDdkvAVTLTDGEEIPADLVVVAPGVRPnTELAKDAGLALGERGWIKVDETLQTSDP-------DVYAAGDC 257

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1931045920 342 AS-----NSETPLPPLAQVAEQQGKFVAK-LLNAEAREGGFR 377
Cdd:COG0446   258 AEvphpvTGKTVYIPLASAANKQGRVAAEnILGGPAPFPGLG 299
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
33-411 1.04e-25

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 108.31  E-value: 1.04e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  33 PRVVILGTGWAGARLA---RDLDckTSYDLTIVSPRNHMVFT-PLLASAAVGTLEItsviEPIRYLQPDLGNPKN-HYYA 107
Cdd:COG1251     2 MRIVIIGAGMAGVRAAeelRKLD--PDGEITVIGAEPHPPYNrPPLSKVLAGETDE----EDLLLRPADFYEENGiDLRL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 108 G-KAKGVDVAKKVIVCecADGHEYEvkFDKLAVCTGALGTTFGVPGVD-EHTFPLRDATHAFRIRERLltnvalasvpsr 185
Cdd:COG1251    76 GtRVTAIDRAARTVTL--ADGETLP--YDKLVLATGSRPRVPPIPGADlPGVFTLRTLDDADALRAAL------------ 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 186 trEERKKLlqtVIVGGGPTGVEFAGELASfiretmrkahpeacADMKVTLIEANELL--GSFDGSLRKYAASKLTQGGVN 263
Cdd:COG1251   140 --APGKRV---VVIGGGLIGLEAAAALRK--------------RGLEVTVVERAPRLlpRQLDEEAGALLQRLLEALGVE 200

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 264 I-----VKGIVQRVTDGAVELKDGTTIPTGLIVWSTGVGP-TPFMSSLPfmLSKGGRLAVNDRLNVFDkatgevcADVFA 337
Cdd:COG1251   201 VrlgtgVTEIEGDDRVTGVRLADGEELPADLVVVAIGVRPnTELARAAG--LAVDRGIVVDDYLRTSD-------PDIYA 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 338 LGDCAS----NSETPLPPLAQVAEQQGKFVAK-LLNAEAREGG----FRLDESAstfkyLHLGSMAALTTGEAVIELGKK 408
Cdd:COG1251   272 AGDCAEhpgpVYGRRVLELVAPAYEQARVAAAnLAGGPAAYEGsvpsTKLKVFG-----VDVASAGDAEGDEEVVVRGDP 346


                  ...
gi 1931045920 409 DSG 411
Cdd:COG1251   347 ARG 349
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 98-365 1.90e-14

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 75.12  E-value: 1.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  98 LGNPKNHYYAGKAKGVDvAKKVIVcecaDGHEyEVKFDKLAVCTGALGTTFGVPGVDEhtfplrdathafrirERLLTN- 176
Cdd:COG1249   101 LKKNGVDVIRGRARFVD-PHTVEV----TGGE-TLTADHIVIATGSRPRVPPIPGLDE---------------VRVLTSd 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 177 --VALASVPsrtreerKKLlqtVIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIEANE-LLGSFDGSLRKYA 253
Cdd:COG1249   160 eaLELEELP-------KSL---VVIGGGYIGLEFAQIFARL--------------GSEVTLVERGDrLLPGEDPEISEAL 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 254 ASKLTQGGVNIVKGI-VQRVTDGA----VELKDG---TTIPTGLIVWSTG------------VGPTpfmsslpfmLSKGG 313
Cdd:COG1249   216 EKALEKEGIDILTGAkVTSVEKTGdgvtVTLEDGggeEAVEADKVLVATGrrpntdglgleaAGVE---------LDERG 286

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1931045920 314 RLAVNDRL--NVfdkatgevcADVFALGDCASNsetplPPLAQVAEQQGKFVAK 365
Cdd:COG1249   287 GIKVDEYLrtSV---------PGIYAIGDVTGG-----PQLAHVASAEGRVAAE 326
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 98-374 1.72e-10

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 62.89  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  98 LGNPKNHYYAGKAKGVDvAKKVIVcecadGHEyEVKFDKLAVCTGAlgTTFGVPGVDEHTfplrdathafriRERLLTN- 176
Cdd:PRK06292  102 EKKPKIDKIKGTARFVD-PNTVEV-----NGE-RIEAKNIVIATGS--RVPPIPGVWLIL------------GDRLLTSd 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 177 --VALASVPSRTreerkkllqtVIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIEANE-LLGSFDGSLRKYA 253
Cdd:PRK06292  161 daFELDKLPKSL----------AVIGGGVIGLELGQALSRL--------------GVKVTVFERGDrILPLEDPEVSKQA 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 254 ASKLTQgGVNI-----VKGIVQRVTDGAVELKDG---TTIPTGLIVWSTGVGP-TPFMSslpfmLSKGGrLAVNDR-LNV 323
Cdd:PRK06292  217 QKILSK-EFKIklgakVTSVEKSGDEKVEELEKGgktETIEADYVLVATGRRPnTDGLG-----LENTG-IELDERgRPV 289

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1931045920 324 FDKATGEVCADVFALGDCasnseTPLPPLAQVAEQQGKFVAKLLNAEAREG 374
Cdd:PRK06292  290 VDEHTQTSVPGIYAAGDV-----NGKPPLLHEAADEGRIAAENAAGDVAGG 335
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
 35-373 2.75e-09

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 59.46  E-value: 2.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  35 VVILGTGWAGARLARDLDCKT--SYDLTIVSPRNHMVFTPLLasaavgtleITSVIEPIRYLQpDLGNPKNHYYAG---- 108
Cdd:TIGR02374   1 LVLVGNGMAGHRCIEEVLKLNrhMFEITIFGEEPHPNYNRIL---------LSSVLQGEADLD-DITLNSKDWYEKhgit 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 109 -----KAKGVDVAKKVIVCECADGHEYevkfDKLAVCTGALGTTFGVPGVDehtfplRDATHAFRIRERLLTNVALAsvp 183
Cdd:TIGR02374  71 lytgeTVIQIDTDQKQVITDAGRTLSY----DKLILATGSYPFILPIPGAD------KKGVYVFRTIEDLDAIMAMA--- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 184 srtreerKKLLQTVIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIEANELL--GSFDGSLRKYAASKLTQGG 261
Cdd:TIGR02374 138 -------QRFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLmaKQLDQTAGRLLQRELEQKG 196

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 262 VNIV--KGIVQRVTDGAVE---LKDGTTIPTGLIVWSTGVGPTPFM---SSLPFmlskGGRLAVNDRLNVFDkatgevcA 333
Cdd:TIGR02374 197 LTFLleKDTVEIVGATKADrirFKDGSSLEADLIVMAAGIRPNDELavsAGIKV----NRGIIVNDSMQTSD-------P 265

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1931045920 334 DVFALGDCASNSETPLPPLAQVAEQQGKFVAKLLNAEARE 373
Cdd:TIGR02374 266 DIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEE 305
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 109-364 1.24e-08

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 57.08  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 109 KAKGVDV---------AKKVIVCECADGHEYevKFDKLAVCTGAlgTTFGVPG--VDEHTfpLRDATHAfrirerlltnV 177
Cdd:PRK06416  103 KKNKVDIirgeaklvdPNTVRVMTEDGEQTY--TAKNIILATGS--RPRELPGieIDGRV--IWTSDEA----------L 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 178 ALASVPsrtreerKKLlqtVIVGGGPTGVEFAGELASFiretmrkahpeACadmKVTLIEA-NELLGSFDGSLRKYAASK 256
Cdd:PRK06416  167 NLDEVP-------KSL---VVIGGGYIGVEFASAYASL-----------GA---EVTIVEAlPRILPGEDKEISKLAERA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 257 LTQGGVNIVKGI-VQRVTDGA----VELKDGTTIPT----GLIVwSTGVGPTpfmsslpfmlSKG------------GRL 315
Cdd:PRK06416  223 LKKRGIKIKTGAkAKKVEQTDdgvtVTLEDGGKEETleadYVLV-AVGRRPN----------TENlgleelgvktdrGFI 291

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1931045920 316 AVNDRL--NVfdkatgevcADVFALGDCasnseTPLPPLAQVAEQQGKFVA 364
Cdd:PRK06416  292 EVDEQLrtNV---------PNIYAIGDI-----VGGPMLAHKASAEGIIAA 328
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 112-367 2.76e-08

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 55.82  E-value: 2.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 112 GVDV-AKKVIVCECADGHEYEVKFDKLAVCTGALGTTFGVPGVD-EHTFPLRDATHAFRIRERLltnvalasvpsrtREE 189
Cdd:PRK09564   81 KVDAkNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINlENVYTLKSMEDGLALKELL-------------KDE 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 190 RKKllQTVIVGGGPTGVEFAgelasfiretmrkahpEACA--DMKVTLIEANE--LLGSFDGSLRKYAASKLTQGGVNI- 264
Cdd:PRK09564  148 EIK--NIVIIGAGFIGLEAV----------------EAAKhlGKNVRIIQLEDriLPDSFDKEITDVMEEELRENGVELh 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 265 ----VKGIV--QRVTdgAVELKDGtTIPTGLIVWSTGVGP-TPFMSSLPFMLSKGGRLAVNDrlnvfdkaTGEVC-ADVF 336
Cdd:PRK09564  210 lnefVKSLIgeDKVE--GVVTDKG-EYEADVVIVATGVKPnTEFLEDTGLKTLKNGAIIVDE--------YGETSiENIY 278

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1931045920 337 ALGDCAS-----NSETPLPPLAQVAEQQGKFVAKLL 367
Cdd:PRK09564  279 AAGDCATiynivSNKNVYVPLATTANKLGRMVGENL 314
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 197-282 9.90e-08

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 49.12  E-value: 9.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 197 VIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIE-ANELLGSFDGSLRKYAASKLTQGGVNIVKG-IVQRVTD 274
Cdd:pfam00070   3 VVVGGGYIGLELAGALARL--------------GSKVTVVErRDRLLPGFDPEIAKILQEKLEKNGIEFLLNtTVEAIEG 68

                          90
                  ....*....|..
gi 1931045920 275 GA----VELKDG 282
Cdd:pfam00070  69 NGdgvvVVLTDG 80
lipoamide_DH TIGR01350
dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a ...
 197-365 1.66e-07

dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.


Pssm-ID: 273568 [Multi-domain]  Cd Length: 460  Bit Score: 53.42  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 197 VIVGGGPTGVEFAGELASFiretmrkahpeacaDMKVTLIEANE-LLGSFDGSLRKYAASKLTQGGVNIVKGI-VQRVTD 274
Cdd:TIGR01350 174 VIIGGGVIGIEFASIFASL--------------GSKVTVIEMLDrILPGEDAEVSKVLQKALKKKGVKILTNTkVTAVEK 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 275 GA----VELKDGTT---------IPTGLIVWSTGVGptpfMSSLPFMLSKGGRLAVND--RLNVfdkatgevcADVFALG 339
Cdd:TIGR01350 240 NDdqvtYENKGGETetltgekvlVAVGRKPNTEGLG----LEKLGVELDERGRIVVDEymRTNV---------PGIYAIG 306

                         170       180
                  ....*....|....*....|....*.
gi 1931045920 340 DCASNsetplPPLAQVAEQQGKFVAK 365
Cdd:TIGR01350 307 DVIGG-----PMLAHVASHEGIVAAE 327
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
111-342 6.29e-06

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 48.37  E-value: 6.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 111 KGVDVAKKVIVCecaDGHEYEvkFDKLAVCTGAlgTTFgVPgvdehtfPLRDathafriRERLLTnvaLASVPS-RTREE 189
Cdd:PRK04965   82 TDIDAEAQVVKS---QGNQWQ--YDKLVLATGA--SAF-VP-------PIPG-------RELMLT---LNSQQEyRAAET 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 190 RKKLLQTV-IVGGGPTGVEFAGELASfiretmrkahpeacADMKVTLIE-ANELLGSFdgsLRKYAASKL----TQGGVN 263
Cdd:PRK04965  137 QLRDAQRVlVVGGGLIGTELAMDLCR--------------AGKAVTLVDnAASLLASL---MPPEVSSRLqhrlTEMGVH 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 264 I-VKGIVQRVT---DG-AVELKDGTTIPTGLIVWSTGVGP-TPFMSSLPFMLSKGgrLAVNDRLNVFDkatgevcADVFA 337
Cdd:PRK04965  200 LlLKSQLQGLEktdSGiRATLDSGRSIEVDAVIAAAGLRPnTALARRAGLAVNRG--IVVDSYLQTSA-------PDIYA 270


                  ....*
gi 1931045920 338 LGDCA 342
Cdd:PRK04965  271 LGDCA 275
PRK14989 PRK14989
nitrite reductase subunit NirD; Provisional
 34-388 1.69e-05

nitrite reductase subunit NirD; Provisional


Pssm-ID: 184951 [Multi-domain]  Cd Length: 847  Bit Score: 47.42  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920  34 RVVILGTGWAGARLARDLDCKT---SYDLTIVSPRNHMVFTPLLASAAVG--TLEITSVIEPIRYLQpdlgNPKNHYYAG 108
Cdd:PRK14989    5 RLAIIGNGMVGHRFIEDLLDKAdaaNFDITVFCEEPRIAYDRVHLSSYFShhTAEELSLVREGFYEK----HGIKVLVGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 109 KAKGVDVAKKVIvcECADGHEyeVKFDKLAVCTGALGTtfgVPGVDEHtfplrDATHAFRIRerllTNVALASVPSRTRE 188
Cdd:PRK14989   81 RAITINRQEKVI--HSSAGRT--VFYDKLIMATGSYPW---IPPIKGS-----ETQDCFVYR----TIEDLNAIEACARR 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 189 ERKKllqtVIVGGGPTGVEFAGELASFIRETmrkaHPEACADMkvtlIEANELLGSFDGSLRKyaasKLTQGGVNI---- 264
Cdd:PRK14989  145 SKRG----AVVGGGLLGLEAAGALKNLGVET----HVIEFAPM----LMAEQLDQMGGEQLRR----KIESMGVRVhtsk 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 265 -VKGIVQRVTDG--AVELKDGTTIPTGLIVWSTGVGPTPFMSS-LPFMLSKGGRLAVNDRLNVFDKatgevcaDVFALGD 340
Cdd:PRK14989  209 nTLEIVQEGVEArkTMRFADGSELEVDFIVFSTGIRPQDKLATqCGLAVAPRGGIVINDSCQTSDP-------DIYAIGE 281

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1931045920 341 CASNSET------PLPPLAQVA-----EQQGKFVA-------KLL--------NAEAREGGFR----LDESASTFKYL 388
Cdd:PRK14989  282 CASWNNRvfglvaPGYKMAQVAvdhllGSENAFEGadlsaklKLLgvdvggigDAHGRTPGARsyvyLDESKEIYKRL 359
PRK06116 PRK06116
glutathione reductase; Validated
 196-298 9.12e-05

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 44.76  E-value: 9.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 196 TVIVGGGPTGVEFAGELASFIRET---MRKAHPeacadmkvtlieanelLGSFDGSLRKYAASKLTQGGVNIVKG-IVQR 271
Cdd:PRK06116  170 VAVVGAGYIAVEFAGVLNGLGSEThlfVRGDAP----------------LRGFDPDIRETLVEEMEKKGIRLHTNaVPKA 233

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1931045920 272 V---TDG--AVELKDGTTIPTGLIVWSTGVGP 298
Cdd:PRK06116  234 VeknADGslTLTLEDGETLTVDCLIWAIGREP 265
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 257-374 4.11e-04

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 42.54  E-value: 4.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 257 LTQGGVNIVKGIVQRVTDGAVELKDGTTIPTGLIVWSTGvgptpFMSSLPFMlskgGRLAVNDRLNVFDKAT--GEVCAD 334
Cdd:COG2072   278 LRRGNVELVTGGIERITEDGVVFADGTEHEVDVIVWATG-----FRADLPWL----APLDVRGRDGRSGPRAylGVVVPG 348

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1931045920 335 V---FALGdcaSNSETPLPPLAQVAEQQGKFVAKLLNAEAREG 374
Cdd:COG2072   349 FpnlFFLG---PNSPSGHSSLTLGAERQARYIARLIAHMRRRG 388
PRK08010 PRK08010
pyridine nucleotide-disulfide oxidoreductase; Provisional
 127-340 1.61e-03

pyridine nucleotide-disulfide oxidoreductase; Provisional


Pssm-ID: 181196 [Multi-domain]  Cd Length: 441  Bit Score: 40.77  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 127 GHEYEVKFDKLAVCTGALGTTFGVPGVDEhTFPLRDATHAFRIRERlltnvalasvPSRTReerkkllqtvIVGGGPTGV 206
Cdd:PRK08010  113 EGNLEIHGEKIFINTGAQTVVPPIPGITT-TPGVYDSTGLLNLKEL----------PGHLG----------ILGGGYIGV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 207 EFAGELASFiretmrkahpeacaDMKVTLIE-ANELLGSFDGSLRKYAASKLTQGGVNIV-KGIVQRVT--DGAVELK-- 280
Cdd:PRK08010  172 EFASMFANF--------------GSKVTILEaASLFLPREDRDIADNIATILRDQGVDIIlNAHVERIShhENQVQVHse 237

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1931045920 281 DGTTIPTGLIVWStgvGPTPFMSSLpfMLSKGGrLAVNDRLN-VFDKATGEVCADVFALGD 340
Cdd:PRK08010  238 HAQLAVDALLIAS---GRQPATASL--HPENAG-IAVNERGAiVVDKYLHTTADNIWAMGD 292
PRK07251 PRK07251
FAD-containing oxidoreductase;
110-298 4.56e-03

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 39.35  E-value: 4.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 110 AKGVDVAKKVIVCECADGHEyEVKFDKLAVCTGALGTTFGVPGvdehtfpLRDATHAFRIRERLltnvALASVPSRTree 189
Cdd:PRK07251   96 AEAHFVSNKVIEVQAGDEKI-ELTAETIVINTGAVSNVLPIPG-------LADSKHVYDSTGIQ----SLETLPERL--- 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 190 rkkllqtVIVGGGPTGVEFAG---ELASfiretmrkahpeacadmKVTLIEA-NELLGSFDGSLRKYAASKLTQGGVNIV 265
Cdd:PRK07251  161 -------GIIGGGNIGLEFAGlynKLGS-----------------KVTVLDAaSTILPREEPSVAALAKQYMEEDGITFL 216

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1931045920 266 KGI----VQRVTDGAVELKDGTTIPTGLIVWSTGVGP 298
Cdd:PRK07251  217 LNAhtteVKNDGDQVLVVTEDETYRFDALLYATGRKP 253
PRK07846 PRK07846
mycothione reductase; Reviewed
 177-372 4.68e-03

mycothione reductase; Reviewed


Pssm-ID: 181142 [Multi-domain]  Cd Length: 451  Bit Score: 39.17  E-value: 4.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 177 VALASVPSRTREERKKLLQ----TVIVGGGPTGVEFagelasfiretmrkAHPEACADMKVTLIEANE-LLGSFDGSLRK 251
Cdd:PRK07846  146 IADSGVRYHTSDTIMRLPElpesLVIVGGGFIAAEF--------------AHVFSALGVRVTVVNRSGrLLRHLDDDISE 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931045920 252 ----YAASKLT-QGGVNIVKgiVQRVTDG-AVELKDGTTIPTGLIVWSTGVGPTPFMSSLP---FMLSKGGRLAVNDrln 322
Cdd:PRK07846  212 rfteLASKRWDvRLGRNVVG--VSQDGSGvTLRLDDGSTVEADVLLVATGRVPNGDLLDAAaagVDVDEDGRVVVDE--- 286

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1931045920 323 vFDKATGEvcaDVFALGDCASnsetplpplaqvaEQQGKFVAkllNAEAR 372
Cdd:PRK07846  287 -YQRTSAE---GVFALGDVSS-------------PYQLKHVA---NHEAR 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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