NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2034063475|dbj|GIR53057|]
View 

MAG: hypothetical protein CM15mP62_05280 [Rhodospirillaceae bacterium]

Protein Classification

DUF1289 domain-containing protein( domain architecture ID 10007186)

DUF1289 domain-containing protein similar to Escherichia coli YdhL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
1-59 5.40e-20

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


:

Pssm-ID: 442542  Cd Length: 59  Bit Score: 74.97  E-value: 5.40e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2034063475  1 MDKGIQIPSPCVGVCQINASTKYCLGCWRTLKEVAHWSRYSNDEKEILMTELAERQKRL 59
Cdd:COG3313    1 MMMEQPVPSPCIGVCSLDPEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRAAL 59
 
Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
1-59 5.40e-20

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 74.97  E-value: 5.40e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2034063475  1 MDKGIQIPSPCVGVCQINASTKYCLGCWRTLKEVAHWSRYSNDEKEILMTELAERQKRL 59
Cdd:COG3313    1 MMMEQPVPSPCIGVCSLDPEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRAAL 59
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 9-56 1.22e-15

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 63.35  E-value: 1.22e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2034063475  9 SPCVGVCQINAsTKYCLGCWRTLKEVAHWSRYSNDEKEILMTELAERQ 56
Cdd:pfam06945  1 SPCIGVCSLDE-DGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQRR 47
 
Name Accession Description Interval E-value
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
1-59 5.40e-20

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 74.97  E-value: 5.40e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2034063475  1 MDKGIQIPSPCVGVCQINASTKYCLGCWRTLKEVAHWSRYSNDEKEILMTELAERQKRL 59
Cdd:COG3313    1 MMMEQPVPSPCIGVCSLDPEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLPQRRAAL 59
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 9-56 1.22e-15

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 63.35  E-value: 1.22e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2034063475  9 SPCVGVCQINAsTKYCLGCWRTLKEVAHWSRYSNDEKEILMTELAERQ 56
Cdd:pfam06945  1 SPCIGVCSLDE-DGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQRR 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH