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Conserved domains on  [gi|1765194590|gb|KAB6061785|]
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F0F1 ATP synthase subunit epsilon [Bifidobacterium adolescentis]

Protein Classification

F0F1 ATP synthase subunit epsilon( domain architecture ID 10793808)

F0F1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-89 6.57e-43

F0F1 ATP synthase subunit epsilon; Provisional


:

Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 134.38  E-value: 6.57e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590  1 MAGSTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTV 80
Cdd:PRK13442   1 MAGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTV 80


                 ....*....
gi 1765194590 81 AVERGTNVK 89
Cdd:PRK13442  81 LAERAELVA 89
 
Name Accession Description Interval E-value
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-89 6.57e-43

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 134.38  E-value: 6.57e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590  1 MAGSTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTV 80
Cdd:PRK13442   1 MAGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTV 80


                 ....*....
gi 1765194590 81 AVERGTNVK 89
Cdd:PRK13442  81 LAERAELVA 89
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-84 7.05e-23

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 84.86  E-value: 7.05e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADT 79
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-84 1.11e-21

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 81.79  E-value: 1.11e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADE 79
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-84 1.65e-21

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.17  E-value: 1.65e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590  6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADS 79
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 5-92 1.09e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 71.90  E-value: 1.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   5 TLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTV---A 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTIladG 80

                          90
                  ....*....|.
gi 1765194590  82 VERGTNVKRAE 92
Cdd:TIGR01216  81 AVFADDIDEAE 91
 
Name Accession Description Interval E-value
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-89 6.57e-43

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 134.38  E-value: 6.57e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590  1 MAGSTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTV 80
Cdd:PRK13442   1 MAGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTV 80


                 ....*....
gi 1765194590 81 AVERGTNVK 89
Cdd:PRK13442  81 LAERAELVA 89
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 6-84 7.05e-23

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 84.86  E-value: 7.05e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADT 79
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 4-92 2.69e-22

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 83.66  E-value: 2.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   4 STLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAV- 82
Cdd:PRK00571    2 ATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLAd 81

                          90
                  ....*....|..
gi 1765194590  83 --ERGTNVKRAE 92
Cdd:PRK00571   82 saERADDIDEAR 93
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-84 1.11e-21

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 81.79  E-value: 1.11e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:cd12152     1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADE 79
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 6-84 1.65e-21

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 80.17  E-value: 1.65e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1765194590  6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADS 79
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 5-92 1.09e-17

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 71.90  E-value: 1.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   5 TLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTV---A 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTIladG 80

                          90
                  ....*....|.
gi 1765194590  82 VERGTNVKRAE 92
Cdd:TIGR01216  81 AVFADDIDEAE 91
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 4-89 5.24e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 59.81  E-value: 5.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   4 STLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVE 83
Cdd:PRK14736    2 ATFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVLAE 81


                  ....*.
gi 1765194590  84 RGTNVK 89
Cdd:PRK14736   82 RAAPVE 87
atpE CHL00063
ATP synthase CF1 epsilon subunit
 5-88 2.06e-11

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 55.64  E-value: 2.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   5 TLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGtIVVVDPEGNRLSFEVTDGFISFDSNKLTVAV-- 82
Cdd:CHL00063    2 TLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIG-VLRIRLNDQWLTMALMGGFARIGNNEITILVnd 80


                  ....*..
gi 1765194590  83 -ERGTNV 88
Cdd:CHL00063   81 aEKGSDI 87
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-84 2.86e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 53.00  E-value: 2.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   1 MAGsTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRlSFEVTDGFISFDSNKLTV 80
Cdd:PRK13443    1 MAG-TLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQ-EYAVTGGFAEINATSISV 78


                  ....
gi 1765194590  81 AVER 84
Cdd:PRK13443   79 LAEK 82
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 6-92 1.18e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 51.54  E-value: 1.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDpEGNRLSFEVTDGFISFDSNKLTV---AV 82
Cdd:PRK14735    3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVK-NGVRTPFAISGGFMEVLPHRVTIladTA 81

                          90
                  ....*....|..
gi 1765194590  83 ERGTNV--KRAE 92
Cdd:PRK14735   82 ERADEIdeARAE 93
atpC PRK13449
ATP synthase F1 subunit epsilon;
6-86 9.48e-08

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 45.15  E-value: 9.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590  6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLS-FEVTDGFISFDSNKLTVAVER 84
Cdd:PRK13449   4 LHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEvFHVQGGFAEVNEKGLTILAEH 83


                 ..
gi 1765194590 85 GT 86
Cdd:PRK13449  84 AV 85
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 2.00e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 45.33  E-value: 2.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   1 MAgSTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDpEGNRLSFEVTDGFISFDSNKLTV 80
Cdd:PRK13446    1 MA-KKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKK-GGKTHYVAVNGGFAEVSNNKVTV 78


                  ...
gi 1765194590  81 AVE 83
Cdd:PRK13446   79 LAE 81
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-85 6.10e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 44.10  E-value: 6.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   1 MAGSTLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGtIVVVDPEGNRLSFEVTDGFISFDSNKLTV 80
Cdd:PRK13444    1 MMAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIG-LLEIRKGEKLKRISVEGGFCEVKDNQISI 79


                  ....*
gi 1765194590  81 AVERG 85
Cdd:PRK13444   80 LTDHG 84
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 4-89 1.50e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 43.22  E-value: 1.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   4 STLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGtIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVE 83
Cdd:PRK13448    2 ATFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPG-ILTVTAGGNQQKIVVLGGLAEVSEKGLTVLAD 80


                  ....*.
gi 1765194590  84 RGTNVK 89
Cdd:PRK13448   81 VATSVA 86
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 5-92 4.79e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 41.67  E-value: 4.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   5 TLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGNRLSFEVTDGFISFDSNKLTVAVER 84
Cdd:PRK13450    3 NIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILCDA 82

                          90
                  ....*....|...
gi 1765194590  85 G-----TNVKRAE 92
Cdd:PRK13450   83 SewpeeIDIKRAE 95
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 5-88 9.51e-06

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 40.63  E-value: 9.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1765194590   5 TLQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVV--DPEGNRLSFEVTDGFISFDSNKLTVAV 82
Cdd:PRK01474    4 TILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYidDMHKSENTYLISGGVTEVTGNYINIAT 83


                  ....*.
gi 1765194590  83 ERGTNV 88
Cdd:PRK01474   84 ETAINV 89
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 6-83 2.07e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 34.38  E-value: 2.07e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1765194590   6 LQVNIVAADHPVWHGTAKSVTIPASEGGMGILPDHEPVLTVIKEGTIVVVDPEGnRLSFEVTDGFISFDSNKLTVAVE 83
Cdd:PRK13451    1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDD-EYEYKVADGFLHCDGKNVIIITE 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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