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Conserved domains on  [gi|2124269845|gb|KAH6567892|]
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hypothetical protein BASA62_005854 [Batrachochytrium salamandrivorans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LINES_N super family cl20635
Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this ...
 358-403 7.20e-03

Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this protein is involved in embryonic segmentation and may function as a transcriptional regulator.


The actual alignment was detected with superfamily member pfam14694:

Pssm-ID: 464266  Cd Length: 351  Bit Score: 38.45  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2124269845 358 CDPSRMLVMLLEIWNFDHTGLLDLVILDDTYFQRYLVAYITFAREN 403
Cdd:pfam14694 298 CNPHCIFLFFLKNVAFDSTVLLDFLISSETCFLEYFVRYLKLLREN 343
 
Name Accession Description Interval E-value
LINES_N pfam14694
Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this ...
 358-403 7.20e-03

Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this protein is involved in embryonic segmentation and may function as a transcriptional regulator.


Pssm-ID: 464266  Cd Length: 351  Bit Score: 38.45  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2124269845 358 CDPSRMLVMLLEIWNFDHTGLLDLVILDDTYFQRYLVAYITFAREN 403
Cdd:pfam14694 298 CNPHCIFLFFLKNVAFDSTVLLDFLISSETCFLEYFVRYLKLLREN 343
 
Name Accession Description Interval E-value
LINES_N pfam14694
Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this ...
 358-403 7.20e-03

Lines N-terminus; This family represents the N-terminus of protein lines. In Drosophila this protein is involved in embryonic segmentation and may function as a transcriptional regulator.


Pssm-ID: 464266  Cd Length: 351  Bit Score: 38.45  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2124269845 358 CDPSRMLVMLLEIWNFDHTGLLDLVILDDTYFQRYLVAYITFAREN 403
Cdd:pfam14694 298 CNPHCIFLFFLKNVAFDSTVLLDFLISSETCFLEYFVRYLKLLREN 343
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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