|
Name |
Accession |
Description |
Interval |
E-value |
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
28-342 |
0e+00 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 646.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 28 IQKLEGSGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKKLVPFGFTTATEFHQKRSEIIQLTT 107
Cdd:TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 108 GSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSD 187
Cdd:TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 188 VLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAVV 267
Cdd:TIGR02239 161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182313988 268 ITNQVVAQVDGAA-MFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGDAKD 342
Cdd:TIGR02239 241 ITNQVVAQVDGAGsMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
9-342 |
0e+00 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 623.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 9 SSADSTVAAVDEETAGPIPIQKLEGSGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKKLVPFG 88
Cdd:PTZ00035 4 SQNEQQEEEEEEEAEGFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 89 FTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGT 168
Cdd:PTZ00035 84 FISATEYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 169 FRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMHL 248
Cdd:PTZ00035 164 FRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 249 ARFLRTLLRLADEFGVAVVITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEA 328
Cdd:PTZ00035 244 GKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEA 323
|
330
....*....|....
gi 2182313988 329 MYAILPDGIGDAKD 342
Cdd:PTZ00035 324 VFAISEGGIIDAKD 337
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
1-342 |
0e+00 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 599.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 1 MALQEERTSSADSTVAAVDEETAGPIPIQKLEGSGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDA 80
Cdd:PLN03186 1 MAQAVAAAAAQAMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 81 AKKLVPFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKC 160
Cdd:PLN03186 81 ASKLVPLGFTTASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 161 LYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGE 240
Cdd:PLN03186 161 MYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 241 LSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDS 320
Cdd:PLN03186 241 LSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISS 320
|
330 340
....*....|....*....|..
gi 2182313988 321 PCLPEAEAMYAILPDGIGDAKD 342
Cdd:PLN03186 321 PCLPEAEARFSISSEGVTDVKD 342
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
105-339 |
0e+00 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 559.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLS 184
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGV 264
Cdd:cd19513 81 GEDVLDNVAYARAYNTDHQMQLLIQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2182313988 265 AVVITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGD 339
Cdd:cd19513 161 AVVITNQVVAQVDGAAMFAGDPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
88-340 |
0e+00 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 532.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 88 GFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEG 167
Cdd:pfam08423 2 GFTTATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 168 TFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMH 247
Cdd:pfam08423 82 TFRPERLVAIAERYGLDPEDVLDNVAYARAYNSEHQMQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELAERQQH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 248 LARFLRTLLRLADEFGVAVVITNQVVAQVDGAA-MFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEA 326
Cdd:pfam08423 162 LAKFLRTLQRLADEFGVAVVITNQVVAQVDGAAgMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPES 241
|
250
....*....|....
gi 2182313988 327 EAMYAILPDGIGDA 340
Cdd:pfam08423 242 EAVFAIGSGGIIDP 255
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
105-338 |
3.72e-159 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 444.67 E-value: 3.72e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLS 184
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGV 264
Cdd:cd01123 81 PDDVLDNVAYARAFNSDHQTQLLDQAAAMMVESRFKLLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2182313988 265 AVVITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIG 338
Cdd:cd01123 161 AVVVTNQVVAQVDGAMMFAADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADGVG 234
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
28-340 |
4.29e-157 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 442.68 E-value: 4.29e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 28 IQKLEGSGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKKLVPFGFTTATEFHQKRSEIIQLTT 107
Cdd:TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 108 GSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSD 187
Cdd:TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 188 VLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAVV 267
Cdd:TIGR02238 161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVF 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2182313988 268 ITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGDA 340
Cdd:TIGR02238 241 VTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
2-342 |
4.06e-156 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 441.14 E-value: 4.06e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 2 ALQEERTSSADSTVA-AVDEETAGPIPIQKLEGSGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDA 80
Cdd:PLN03187 4 SAQADEGAQLQLVEAeEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 81 AKKLVPFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKC 160
Cdd:PLN03187 84 AEKLLNQGFITGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 161 LYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGE 240
Cdd:PLN03187 164 AYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 241 LSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVDGAAMFSaDPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDS 320
Cdd:PLN03187 244 LAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFIS-DPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVFDA 322
|
330 340
....*....|....*....|..
gi 2182313988 321 PCLPEAEAMYAILPDGIGDAKD 342
Cdd:PLN03187 323 PNLPEAEAEFQITSGGIMDAKD 344
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
105-339 |
6.79e-140 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 395.96 E-value: 6.79e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLS 184
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIAERFGVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSES-RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFG 263
Cdd:cd19514 81 HDAVLDNILYARAYTSEHQMELLDYVAAKFHEEaVFRLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182313988 264 VAVVITNQVVAQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGD 339
Cdd:cd19514 161 VAVFITNQVTADPGAAMTFQADPKKPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAITAGGIAD 236
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
21-340 |
4.95e-133 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 381.53 E-value: 4.95e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 21 ETAGPIPIQKLEGSGISAADvkKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKKLVPF-GFTTATEFHQKR 99
Cdd:PRK04301 1 EKMKEKDLEDLPGVGPATAE--KLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIgGFETALEVLERR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 100 SEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAE 179
Cdd:PRK04301 79 KNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 180 RYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESR-YALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRL 258
Cdd:PRK04301 159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGEnIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 259 ADEFGVAVVITNQVVAQVDgaaMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIG 338
Cdd:PRK04301 239 ADLYNAAVVVTNQVMARPD---AFFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIR 315
|
..
gi 2182313988 339 DA 340
Cdd:PRK04301 316 DA 317
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
28-339 |
8.32e-121 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 350.20 E-value: 8.32e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 28 IQKLEGSGISAAdvKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKKLVPFG-FTTATEFHQKRSEIIQLT 106
Cdd:TIGR02236 1 LEDLPGVGPATA--EKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGgFETADDVLERRKTIGKIT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 107 TGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGS 186
Cdd:TIGR02236 79 TGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 187 DVLDNVAYARAYNTDHQMELLINAAAMMSE--SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGV 264
Cdd:TIGR02236 159 EVLKNIYVARAYNSNHQMLLVEKAEDLIKElnNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNA 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2182313988 265 AVVITNQVVAQVDgaaMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGD 339
Cdd:TIGR02236 239 AVVVTNQVMARPD---AFFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
105-339 |
3.88e-113 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 327.78 E-value: 3.88e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLS 184
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSESR-YALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFG 263
Cdd:cd19515 81 PDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNnIKLLIVDSLTSHFRAEYVGRGTLAERQQKLNKHLHDLHRLADLYN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182313988 264 VAVVITNQVVAQVDgaaMFSADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAEAMYAILPDGIGD 339
Cdd:cd19515 161 IAVLVTNQVMAKPD---AFFGDPTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
123-307 |
5.59e-55 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 177.93 E-value: 5.59e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 123 GSITELFGEFRTGKTQICHTLAVTCQLpvdmggGEGKCLYIDTEGTFRPERLLAVAERYGLSGSD---VLDNVAYARAYN 199
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILEASPSSELElaeALSRLLYFRPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 200 TDHQMELLINAAAMMSES-RYALLIVDSATALYRTDY----SGRGELSARQMHLARFLRTLLRLADEFGVAVVITNQVVA 274
Cdd:cd01393 75 TLAHLLALDSLPESLFPPpNTSLVVVDSVSALFRKAFprggDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTT 154
|
170 180 190
....*....|....*....|....*....|...
gi 2182313988 275 QVDGaaMFSADPKKPIGGNIMGHASTTRLYLRK 307
Cdd:cd01393 155 KIRG--GSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
112-277 |
1.11e-46 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 158.61 E-value: 1.11e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 112 LDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSDV--- 188
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKRYHLEkak 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 189 --LDNVAYARAYNTDHQMELLINA-AAMMSESRYALLIVDSATALYRTDY-SGRGELSARQMHLARFLRTLLRLADEFGV 264
Cdd:cd19491 81 nfLDNIFVEHVADLETLEHCLNYQlPALLERGPIRLVVIDSIAALFRSEFdTSRSDLVERAKYLRRLADHLKRLADKYNL 160
|
170
....*....|...
gi 2182313988 265 AVVITNQVVAQVD 277
Cdd:cd19491 161 AVVVVNQVTDRFD 173
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
105-337 |
5.98e-45 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 153.48 E-value: 5.98e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLpvdmggGEGKCLYIDTEGtFRPERLLAVAeryGLS 184
Cdd:PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTEG-LSPERFKQIA---GED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSESrYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGV 264
Cdd:PRK09361 75 FEELLSNIIIFEPSSFEEQSEAIRKAEKLAKEN-VGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2182313988 265 AVVITNQVVAQVDGAAMfsadpkKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAE-AMYAILPDGI 337
Cdd:PRK09361 154 AVVITNQVYSDIDSDGL------RPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGEsAEFRITDRGI 221
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
105-337 |
2.41e-43 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 149.00 E-value: 2.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCqlpvdmGGGEGKCLYIDTEGtFRPERLLAVAeryGLS 184
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIA---GER 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 185 GSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSGRGELSARqmhLARFLRTLLRLADEFGV 264
Cdd:cd01394 71 FESIASNIIVFEPYSFDEQGVAIQEAEKLLKSDKVDLVVVDSATALYRLELGDDSEANRE---LSRQMSKLLSIARKYDI 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2182313988 265 AVVITNQVVAQVDgaamfsADPKKPIGGNIMGHASTTRLYLRKGRGETRVCKIYDSPCLPEAE-AMYAILPDGI 337
Cdd:cd01394 148 PVVITNQVYSDID------DDRLKPVGGTLLEHWSKAIIRLEKSPPGLRRATLEKHRSRPEGQsAGFRITDRGI 215
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
113-321 |
1.40e-41 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 144.38 E-value: 1.40e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 113 DKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLAVAER-----------Y 181
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAEArfpeafsgfmeE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 182 GLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSG-RGELSARQMHLARFLRTLLRLAD 260
Cdd:cd19493 81 NERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSSGVRLVVIDSIAALVRREFGGsDGEVTERHNALAREASSLKRLAE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2182313988 261 EFGVAVVITNQVVAQVDGAAMFSADPKKPIgGNIMGHASTTRLYLRKGRG-ETRVCKIYDSP 321
Cdd:cd19493 161 EFRIAVLVTNQATTHFGDAGDGSSGVTAAL-GDAWAHAVNTRLRLERCLLqLRRVLEIVKSP 221
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
112-337 |
3.82e-37 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 132.54 E-value: 3.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 112 LDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCqlpvdMGGGeGKCLYIDTEGtFRPERLLAVAERyglSGSDVLDN 191
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNA-----ARQG-KKVVYIDTEG-LSPERFKQIAED---RPERALSN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 192 VAYARAYNTDHQMELLINAAAMMSESRYALLIVDSATALYRTDYSgrGELSARQMHLARFLRTLLRLADEFGVAVVITNQ 271
Cdd:TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELS--DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2182313988 272 VVAQVDGaamfsaDPKKPIGGNIMGHASTTRLYLRKGRGEtRVCKIYDSPCLPEAE-AMYAILPDGI 337
Cdd:TIGR02237 149 VYTDVNN------GTLRPLGGHLLEHWSKVILRLEKFRGR-RLATLEKHRSRPEGEsVYFRITDDGI 208
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
123-321 |
3.57e-34 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 123.49 E-value: 3.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 123 GSITELFGEFRTGKTQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFrperllavaeryglsgsdvldNVAYARAYNTDH 202
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF---------------------NIHYFRVHDYVE 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 203 QMELLINAAAMMSE-SRYALLIVDSATALYRTDYSGrgeLSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVDGAAM 281
Cdd:cd19492 60 LLALINSLPKFLEDhPKVKLIVVDSIAFPFRHDFDD---LAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTKISEDGQ 136
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2182313988 282 FSAdpkKPIGGNIMGHASTTRLYLRKGRGEtRVCKIYDSP 321
Cdd:cd19492 137 SQL---VPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
97-308 |
8.30e-25 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 102.94 E-value: 8.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 97 QKRSEIIQLTTGSKELDKLL-QGGIETGSITELFGEFRTGKTQICHTLAVTCQLpvdMGGGegkCLYIDTEGTFRPERll 175
Cdd:COG0468 36 KARQDVEVISTGSLALDIALgVGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGI---AAFIDAEHALDPEY-- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 176 avAERYGLSgsdvLDNVAYARAYNTDHQMEL---LINAAAMmsesryALLIVDSATALY-RTDYSGR-GE----LSARQM 246
Cdd:COG0468 108 --AKKLGVD----IDNLLVSQPDTGEQALEIaetLVRSGAV------DLIVVDSVAALVpKAEIEGEmGDshvgLQARLM 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2182313988 247 HLArfLRTLLRLADEFGVAVVITNQVVAQVDgaAMFsADPKKPIGGNIMGHASTTRLYLRKG 308
Cdd:COG0468 176 SQA--LRKLTGAISKSNTTVIFINQLREKIG--VMF-GNPETTTGGNALKFYASVRLDIRRI 232
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
117-307 |
1.17e-23 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 96.55 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 117 QGGIETGSITELFGEFRTGKTQICHTLA--VTCQLPVDMgggegkcLYIDTEGTFRPERLLAVAE-RYGLSGS--DVLDN 191
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAanVASRSGQNV-------LYIDTKSSFSARRLAQILKsRAQDAEEidKALQR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 192 VAYARAYNTDHQMELLINAAAMMS------ESRYALLIVDSATAL---YRTDYS---GRGELsarqMHLARFLRtllRLA 259
Cdd:cd19489 74 IRVVRVFDPYELLDLLEELRNTLSqqqenlYSRLKLVIIDSLSALispLLGGSKhseGHALL----ASLARLLK---KLA 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2182313988 260 DEFGVAVVITNQVVAQVDGAAMFSadpKKPIGGNIMGHASTTRLYLRK 307
Cdd:cd19489 147 AEYQIAVLVTNLTVRGGDGGQQGS---TKPALGEYWESVPSTRLLLSR 191
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
123-271 |
5.07e-16 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 75.85 E-value: 5.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 123 GSITELFGEFRTGKTQICHTLAVTCQLP-----VDMGGGEGKCLYIDTEGTFRPERLLAVAERYglsgsdVLDNVAYARA 197
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCILPsswggVPLGGLEAAVVFIDTDGRFDILRLRSILEAR------IRAAIQAANS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 198 YNTDHQMELLINAA---------------------------AMMSESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 250
Cdd:cd19490 75 SDDEEDVEEIAREClqrlhifrchsslqllatllslenyllSLSANPELGLLLIDSISAFYWQDRFSAELARAAPLLQEA 154
|
170 180
....*....|....*....|....*
gi 2182313988 251 FLRTLL----RLADEFGVAVVITNQ 271
Cdd:cd19490 155 ALRAILrelrRLRRRFQLVVIATKQ 179
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
105-271 |
1.40e-13 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 68.79 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTcqlpvdmGGGEG-KCLYIDTEgtFRPERLLAVAERYGL 183
Cdd:COG0467 2 VPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE-------GLRRGeKGLYVSFE--ESPEQLLRRAESLGL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 184 SGSDVLDN----VAYARAYNTDHQMELLINA-AAMMSESRYALLIVDSATALYRtdysgrgeLSARQMHLARFLRTLLRL 258
Cdd:COG0467 73 DLEEYIESgllrIIDLSPEELGLDLEELLARlREAVEEFGAKRVVIDSLSGLLL--------ALPDPERLREFLHRLLRY 144
|
170
....*....|...
gi 2182313988 259 ADEFGVAVVITNQ 271
Cdd:COG0467 145 LKKRGVTTLLTSE 157
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
115-268 |
5.54e-12 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 65.69 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 115 LLQGGIETGSITELFGEFRTGKT----QIChtLAVTCQLPV-DMGGGEGKCLYIDTEGTFRP--ERLLAVAERYGLSGSD 187
Cdd:COG3598 5 LVPGLLPEGGVTLLAGPPGTGKSflalQLA--AAVAAGGPWlGRRVPPGKVLYLAAEDDRGElrRRLKALGADLGLPFAD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 188 VLDNVAY---ARAYNTDHQMELLINAAAmmsESRYALLIVDSATALYRTDysgrgELSARQMhlARFLRTLLRLADEFGV 264
Cdd:COG3598 83 LDGRLRLlslAGDLDDTDDLEALERAIE---EEGPDLVVIDPLARVFGGD-----ENDAEEM--RAFLNPLDRLAERTGA 152
|
....
gi 2182313988 265 AVVI 268
Cdd:COG3598 153 AVLL 156
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
111-269 |
3.47e-08 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 52.77 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 111 ELDKLLQGGIETGSITELFGEFRTGKTqichTLAvtCQLPVDMGGGE-----------GKCLYIDTEGTFR--PERLLAV 177
Cdd:pfam13481 21 PRRWLIKGLLPAGGLGLLAGAPGTGKT----TLA--LDLAAAVATGKpwlggprvpeqGKVLYVSAEGPADelRRRLRAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 178 AERYGLSGSDVLDNVAYARAYNTDHQMELLINAA------AMMSESRYALLIVDSATALYrtdysGRGELSARQMhlARF 251
Cdd:pfam13481 95 GADLDLPARLLFLSLVESLPLFFLDRGGPLLDADvdaleaALEEVEDPDLVVIDPLARAL-----GGDENSNSDV--GRL 167
|
170
....*....|....*...
gi 2182313988 252 LRTLLRLADEFGVAVVIT 269
Cdd:pfam13481 168 VKALDRLARRTGATVLLV 185
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
76-307 |
3.47e-07 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 50.86 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 76 KILDAAKKLVP--FGFTTATEFHQKRSEIIQ-LTTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQIchTLAVTCQlpV 151
Cdd:pfam00154 1 KALEAALKQIEkqFGKGSIMKLGDEKKLDVEtISTGSLALDIALGiGGYPKGRIIEIYGPESSGKTTL--ALHAIAE--A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 152 DMGGgeGKCLYIDTEGTFRPerllAVAERYGLSgsdvLDNVAYARAyNTDHQ----MELLINAAAMmsesryALLIVDSA 227
Cdd:pfam00154 77 QKAG--GTAAFIDAEHALDP----VYAKKLGVD----IDNLLVSQP-DTGEQaleiADMLVRSGAI------DLIVVDSV 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 228 TALY-RTDYSGR-GE----LSARQMHLArfLRTLLRLADEFGVAVVITNQVVAQVdgAAMFsADPKKPIGGNIMGHASTT 301
Cdd:pfam00154 140 AALVpKAEIEGEmGDshvgLQARLMSQA--LRKLTGSISKSNTTVIFINQIREKI--GVMF-GNPETTTGGRALKFYASV 214
|
....*.
gi 2182313988 302 RLYLRK 307
Cdd:pfam00154 215 RLDIRR 220
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
107-308 |
4.16e-07 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 50.25 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 107 TGSKELDKLL-QGGIETGSITELFGEFRTGKTqichTLAVTCQLPVDMGGgeGKCLYIDTEGTFRPErllaVAERYGLSg 185
Cdd:cd00983 7 TGSLSLDIALgIGGLPRGRIIEIYGPESSGKT----TLALHAIAEAQKLG--GTAAFIDAEHALDPE----YAKKLGVD- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 186 sdvLDNVAYARAyNTDHQ----MELLINAAAMmsesryALLIVDSATALY-RTDYSgrGELSARQMHL-AR----FLRTL 255
Cdd:cd00983 76 ---IDNLLVSQP-DTGEQaleiADTLIRSGAV------DLIVVDSVAALVpKAEIE--GEMGDSHVGLqARlmsqALRKL 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2182313988 256 LRLADEFGVAVVITNQVVAQVdgAAMFSAdPKKPIGGNIMGHASTTRLYLRKG 308
Cdd:cd00983 144 TGSLSKSKTTVIFINQLREKI--GVMFGN-PETTTGGNALKFYASVRLDIRRI 193
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
105-271 |
7.70e-07 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 49.18 E-value: 7.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTcQLPVDmgggeGKCLYIDTEGTfrPERLLAVAERYG-- 182
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYA-GAKNG-----EPGLFFTFEES--PERLLRNAKSFGwd 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 183 LSGSDVLDNVAYARAYNTDHQMELLINAAAMMSES----RYALLIVDSATALYRtdysgrgeLSARQMHLARFLRTLLRL 258
Cdd:cd01124 73 FDEMEDEGKLIIVDAPPTEAGRFSLDELLSRILSIiksfKAKRVVIDSLSGLRR--------AKEDQMRARRIVIALLNE 144
|
170
....*....|...
gi 2182313988 259 ADEFGVAVVITNQ 271
Cdd:cd01124 145 LRAAGVTTIFTSE 157
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
122-284 |
8.89e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 8.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 122 TGSITELFGEFRTGKTQICHTLAVTCQLPvdmgggEGKCLYIDTEGTFRPERllavaeryglsgsDVLDNVAYARAYNTD 201
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVL-------------DQLLLIIVGGKKASG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 202 HQMELLINAAAMMSESRYALLIVDSATALYRTDysgrgelSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVDGAAM 281
Cdd:smart00382 62 SGELRLRLALALARKLKPDVLILDEITSLLDAE-------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134
|
...
gi 2182313988 282 FSA 284
Cdd:smart00382 135 RRR 137
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
100-272 |
5.11e-06 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 47.14 E-value: 5.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 100 SEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTqichTLAVtcQLPVDMGGGEGKCLYIDTEGTfrPERLLAVAE 179
Cdd:cd01121 59 EEEERISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKS----TLLL--QVAARLAQRGGKVLYVSGEES--LSQIKLRAE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 180 RYGLSGSDVLdnvAYArayNTDhqMELLInaaAMMSESRYALLIVDSATALYRTDYSG--------RgELSARqmhlarf 251
Cdd:cd01121 131 RLGLGSDNLY---LLA---ETN--LEAIL---AEIEELKPSLVVIDSIQTVYSPELTSspgsvsqvR-ECAAE------- 191
|
170 180
....*....|....*....|.
gi 2182313988 252 lrtLLRLADEFGVAVVITNQV 272
Cdd:cd01121 192 ---LLRLAKETGIPVFLVGHV 209
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
98-269 |
1.20e-05 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 45.73 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 98 KRSEIIqlTTGSKELDKLLQGGIETGSITELFGEFRTGKTqichtlaVTCQLPVDMGGGEGKC-LYIDTEGTFRpeRLLA 176
Cdd:PRK06067 2 GKKEII--STGNEELDRKLGGGIPFPSLILIEGDHGTGKS-------VLSQQFVYGALKQGKKvYVITTENTSK--SYLK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 177 VAERYGLSGSDVldnvaYARAY-------------NTDHQMELLINAAAMMSESRYALLIVDSATALyrTDYsgrgelsA 243
Cdd:PRK06067 71 QMESVKIDISDF-----FLWGYlrifplntegfewNSTLANKLLELIIEFIKSKREDVIIIDSLTIF--ATY-------A 136
|
170 180
....*....|....*....|....*.
gi 2182313988 244 RQMHLARFLRTLLRLADEfGVAVVIT 269
Cdd:PRK06067 137 EEDDILNFLTEAKNLVDL-GKTILIT 161
|
|
| HHH_5 |
pfam14520 |
Helix-hairpin-helix domain; |
34-83 |
4.07e-05 |
|
Helix-hairpin-helix domain;
Pssm-ID: 434010 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 4.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2182313988 34 SGISAADVKKLQEAGFYSVESIQFVPKKALLGIKGISEMKADKILDAAKK 83
Cdd:pfam14520 8 SGIGPKTALALLSAGIGTVEDLAEADVDELAEIPGIGEKTAQRIILELRD 57
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
91-270 |
1.01e-04 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 44.10 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 91 TATEFHQKRSEIIqLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQI-CHTLAVTCQlpvdmgGGEgKCLYIDTEgtf 169
Cdd:PRK09302 242 TAMRLTQRSSNER-ISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLaSKFAEAACR------RGE-RCLLFAFE--- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 170 rpErllavaeryglSGSDVLDNvayARAYNTD-HQME----LLINAA---------------AMMSESRYALLIVDSATA 229
Cdd:PRK09302 311 --E-----------SRAQLIRN---ARSWGIDlEKMEekglLKIICArpesygledhliiikREIEEFKPSRVAIDPLSA 374
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2182313988 230 LYRtdysGRGELSARQMhlarflrtLLRLAD---EFGVAVVITN 270
Cdd:PRK09302 375 LAR----GGSLNEFRQF--------VIRLTDylkSEEITGLFTN 406
|
|
| RepA_RSF1010_like |
cd01125 |
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
158-268 |
1.83e-03 |
|
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent).
Pssm-ID: 410870 Cd Length: 238 Bit Score: 39.29 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 158 GKCLYIDTEGTFR--PERLLAVAERYGLSGSDVLDN--VAYARAYNTDHQMELLINAAAMMSESRYALLIVDSataLYRT 233
Cdd:cd01125 40 GRVVYLAAEDPRDglRRRLKAIGAHLGDEDAALAENlvIENLRGKPVSIDAEAPELERIIEELEGVRLIIIDT---LARV 116
|
90 100 110
....*....|....*....|....*....|....*
gi 2182313988 234 DYSGRgELSARQMhlARFLRTLLRLADEFGVAVVI 268
Cdd:cd01125 117 LHGGD-ENDAADM--GAFVAGLDRIARETGAAVLL 148
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
107-280 |
4.25e-03 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 38.00 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 107 TGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVdmggGEgKCLYIDTEGTfrPERLLAVAERYG---- 182
Cdd:pfam06745 3 TGIPGLDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNGALKY----GE-PGVFVTLEEP--PEDLRENARSFGwdle 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 183 ------------LSGSDVLDNVAYARaYNTDHQMELLINAAAMMSESRyalLIVDSATALYrtdysgrgeLSARQMHLAR 250
Cdd:pfam06745 76 kleeegklaiidASTSGIGIAEVEDR-FDLEELIERLREAIREIGAKR---VVIDSITTLF---------YLLKPAVARE 142
|
170 180 190
....*....|....*....|....*....|
gi 2182313988 251 FLRTLLRLADEFGVAVVITNQVVAQVDGAA 280
Cdd:pfam06745 143 ILRRLKRVLKGLGVTAIFTSEKPSGEGGIG 172
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
105-168 |
5.92e-03 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 37.50 E-value: 5.92e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVT-CQlpvdmgggEG-KCLYIDTEGT 168
Cdd:COG2874 3 ISTGNDELDKRLGGGIPLGSLVLIEGENGTGKSVLSQQFAYGaLE--------NGlSVTYISTELT 60
|
|
| PRK08533 |
PRK08533 |
flagellar accessory protein FlaH; Reviewed |
111-144 |
8.43e-03 |
|
flagellar accessory protein FlaH; Reviewed
Pssm-ID: 181459 Cd Length: 230 Bit Score: 37.36 E-value: 8.43e-03
10 20 30
....*....|....*....|....*....|....
gi 2182313988 111 ELDKLLQGGIETGSITELFGEFRTGKTQICHTLA 144
Cdd:PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLA 45
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
105-233 |
8.73e-03 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 36.92 E-value: 8.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQG-GIETGSITELFGEFRTGKTQIC-HTLAVTCQlpvdmgGGEgKCLYIDTEGTfrPERLLAVAERYG 182
Cdd:cd19484 1 ISTGIPRLDAMLGGgGFFRGSSILVSGATGTGKTLLAaSFADAACR------RGE-RCLYFAFEES--PAQLIRNAKSIG 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2182313988 183 LSGSDVLDN--VAYARAYNTDHQMEL-LINAAAMMSESRYALLIVDSATALYRT 233
Cdd:cd19484 72 IDLEQMERKglLKIICARPELYGLEDhLIIIKSEINEFKPSRVIVDPLSALARG 125
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
105-279 |
9.57e-03 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 37.72 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 105 LTTGSKELDKLLQGGIETGSITELFGEFRTGK----TQICHTLAvtcqlpvdmgGGEGKCLYIDTEgtfrpERLLAV--- 177
Cdd:COG1066 71 ISTGIGELDRVLGGGLVPGSVVLIGGEPGIGKstllLQVAARLA----------KKGGKVLYVSGE-----ESASQIklr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182313988 178 AERYGLSGSDVLdnVAyaraynTDHQMELLINAAammSESRYALLIVDSATALYRTDYSGR-G------ELSARqmhlar 250
Cdd:COG1066 136 AERLGLLSDNLY--LL------AETDLEAILATI---EELKPDLLVIDSIQTMYSEELESApGsvsqvrECAAE------ 198
|
170 180 190
....*....|....*....|....*....|.
gi 2182313988 251 flrtLLRLADEFGVAVVItnqvVAQV--DGA 279
Cdd:COG1066 199 ----LIRLAKETGIAVFL----VGHVtkEGS 221
|
|
| |
