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Conserved domains on  [gi|691211240|gb|KGF69699|]
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hypothetical protein LL06_09170 [Hoeflea sp. BAL378]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376
SCOP:  4003862

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
62-567 5.60e-65

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.20  E-value: 5.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  62 AIRSAYQIFQDDPKLALTGFSAFNQAGDQVDLWTRSDTPDADLAAVLSAKPDQATEPSFTQAEGSVVIVAPLPADKDGVS 141
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 142 AGHIKTVWSTADIAMSARDFALKAMASQIVVLILSVAVLLLAMRRFVGRPLAQVNERIGALQAGDTTSPIphADKGDEIG 221
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLAL--ALLAAAAA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 222 VVARALAEFCHASQLKLQADADMARQREQIDAERQANMSEAERSARTQRKVVDELGAALERLAAGDLTARVP-DLGGEFT 300
Cdd:COG0840  159 AAAALAALLEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDvDSKDEIG 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 301 ALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLV 380
Cdd:COG0840  239 QLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELA 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 381 GSTRDAAASSSGIVRSAIT--------------AMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGF 446
Cdd:COG0840  319 EEASELAEEGGEVVEEAVEgieeiresveetaeTIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGF 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 447 AVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGV--------------DLVNRTGASMEQIEHQISEVAQKIGAISTA 512
Cdd:COG0840  399 AVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVeameegseeveegvELVEEAGEALEEIVEAVEEVSDLIQEIAAA 478

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 691211240 513 AREQATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRL 567
Cdd:COG0840  479 SEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
62-567 5.60e-65

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.20  E-value: 5.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  62 AIRSAYQIFQDDPKLALTGFSAFNQAGDQVDLWTRSDTPDADLAAVLSAKPDQATEPSFTQAEGSVVIVAPLPADKDGVS 141
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 142 AGHIKTVWSTADIAMSARDFALKAMASQIVVLILSVAVLLLAMRRFVGRPLAQVNERIGALQAGDTTSPIphADKGDEIG 221
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLAL--ALLAAAAA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 222 VVARALAEFCHASQLKLQADADMARQREQIDAERQANMSEAERSARTQRKVVDELGAALERLAAGDLTARVP-DLGGEFT 300
Cdd:COG0840  159 AAAALAALLEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDvDSKDEIG 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 301 ALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLV 380
Cdd:COG0840  239 QLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELA 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 381 GSTRDAAASSSGIVRSAIT--------------AMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGF 446
Cdd:COG0840  319 EEASELAEEGGEVVEEAVEgieeiresveetaeTIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGF 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 447 AVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGV--------------DLVNRTGASMEQIEHQISEVAQKIGAISTA 512
Cdd:COG0840  399 AVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVeameegseeveegvELVEEAGEALEEIVEAVEEVSDLIQEIAAA 478

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 691211240 513 AREQATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRL 567
Cdd:COG0840  479 SEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 319-566 2.11e-61

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 204.44  E-value: 2.11e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   319 TIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAI 398
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   399 TAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLI------- 471
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIkeiqeet 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   472 -------EKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATGLSQINTAINEMDTMTQKNAAMVQDS 544
Cdd:smart00283 161 neavaamEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|..
gi 691211240   545 NLSSQKLSGECERLADVVKSFR 566
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
279-613 3.03e-60

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 210.20  E-value: 3.03e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 279 ALERLAAGDLTARVP-DLGGEFTALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAA 357
Cdd:PRK15041 228 SIRHIAGGDLVKPIEvDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAA 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 358 ALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAA 437
Cdd:PRK15041 308 SMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAA 387

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 438 RAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQA 517
Cdd:PRK15041 388 RAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQS 467

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 518 TGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRLTGLAQPIRAAAPVQGSAQPprsaAAPRyqt 597
Cdd:PRK15041 468 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKTVTP----ATPR--- 540

                        330
                 ....*....|....*.
gi 691211240 598 rgNAALAPGADSWEEF 613
Cdd:PRK15041 541 --KMAVADSGENWETF 554
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 360-545 1.07e-47

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 165.87  E-value: 1.07e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 360 DEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARA 439
Cdd:cd11386   15 DQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 440 GEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATG 519
Cdd:cd11386   95 GEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADG 174

                        170       180
                 ....*....|....*....|....*.
gi 691211240 520 LSQINTAINEMDTMTQKNAAMVQDSN 545
Cdd:cd11386  175 IQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 379-534 1.89e-39

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 142.19  E-value: 1.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  379 LVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRDLAG 458
Cdd:pfam00015   3 LAQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  459 RSATAAKEIKDLIEKSGA--------------QVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATGLSQIN 524
Cdd:pfam00015  83 RSAQAAKEIEALIIEIQKqtndstasiestrqRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVN 162

                         170
                  ....*....|
gi 691211240  525 TAINEMDTMT 534
Cdd:pfam00015 163 QAVARMDQVT 172
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 242-334 5.13e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   242 ADMARQREQIDAERQANMSEAERSARTQRKVVDE---LGAALERLAAGDLTARVPDLGGEFTALQENFNRALSALEATVG 318
Cdd:TIGR02168  389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEieeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468

                           90
                   ....*....|....*.
gi 691211240   319 TIDSAQQAVRQASGSL 334
Cdd:TIGR02168  469 ELEEAEQALDAAEREL 484
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
62-567 5.60e-65

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 222.20  E-value: 5.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  62 AIRSAYQIFQDDPKLALTGFSAFNQAGDQVDLWTRSDTPDADLAAVLSAKPDQATEPSFTQAEGSVVIVAPLPADKDGVS 141
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 142 AGHIKTVWSTADIAMSARDFALKAMASQIVVLILSVAVLLLAMRRFVGRPLAQVNERIGALQAGDTTSPIphADKGDEIG 221
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLAL--ALLAAAAA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 222 VVARALAEFCHASQLKLQADADMARQREQIDAERQANMSEAERSARTQRKVVDELGAALERLAAGDLTARVP-DLGGEFT 300
Cdd:COG0840  159 AAAALAALLEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDvDSKDEIG 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 301 ALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLV 380
Cdd:COG0840  239 QLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELA 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 381 GSTRDAAASSSGIVRSAIT--------------AMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGF 446
Cdd:COG0840  319 EEASELAEEGGEVVEEAVEgieeiresveetaeTIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGF 398

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 447 AVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGV--------------DLVNRTGASMEQIEHQISEVAQKIGAISTA 512
Cdd:COG0840  399 AVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVeameegseeveegvELVEEAGEALEEIVEAVEEVSDLIQEIAAA 478

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 691211240 513 AREQATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRL 567
Cdd:COG0840  479 SEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 319-566 2.11e-61

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 204.44  E-value: 2.11e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   319 TIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAI 398
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   399 TAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLI------- 471
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIkeiqeet 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   472 -------EKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATGLSQINTAINEMDTMTQKNAAMVQDS 544
Cdd:smart00283 161 neavaamEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|..
gi 691211240   545 NLSSQKLSGECERLADVVKSFR 566
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
279-613 3.03e-60

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 210.20  E-value: 3.03e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 279 ALERLAAGDLTARVP-DLGGEFTALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAA 357
Cdd:PRK15041 228 SIRHIAGGDLVKPIEvDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAA 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 358 ALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAA 437
Cdd:PRK15041 308 SMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAA 387

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 438 RAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQA 517
Cdd:PRK15041 388 RAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQS 467

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 518 TGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRLTGLAQPIRAAAPVQGSAQPprsaAAPRyqt 597
Cdd:PRK15041 468 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKTVTP----ATPR--- 540

                        330
                 ....*....|....*.
gi 691211240 598 rgNAALAPGADSWEEF 613
Cdd:PRK15041 541 --KMAVADSGENWETF 554
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 278-613 1.60e-58

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 205.63  E-value: 1.60e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 278 AALERLAAGDLTARVPDLG-GEFTALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTA 356
Cdd:PRK15048 225 AHIREIAGGNLANTLTIDGrSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETA 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 357 AALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEA 436
Cdd:PRK15048 305 ASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEA 384

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 437 ARAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQ 516
Cdd:PRK15048 385 ARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQ 464

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 517 ATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRLtglaqpirAAAPVQGSAQPPRSAAAPRYQ 596
Cdd:PRK15048 465 SRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRL--------AASPLTNKPQTPSRPASEQPP 536

                        330
                 ....*....|....*..
gi 691211240 597 TRGNAALAPGADSWEEF 613
Cdd:PRK15048 537 AQPRLRIAEQDPNWETF 553
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
276-581 2.01e-50

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 182.96  E-value: 2.01e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 276 LGAALERLAAGDLTARVPDLG-GEFTALQENFNRALSALEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQ 354
Cdd:PRK09793 221 IGSHFDSIAAGNLARPIAVYGrNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 355 TAAALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGV 434
Cdd:PRK09793 301 TAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAV 380

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 435 EAARAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAR 514
Cdd:PRK09793 381 EAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASE 460

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 691211240 515 EQATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKSFRLTGLAQPIRAAAPVQ 581
Cdd:PRK09793 461 EQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEVARHESAQLQ 527
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 360-545 1.07e-47

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 165.87  E-value: 1.07e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 360 DEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARA 439
Cdd:cd11386   15 DQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 440 GEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATG 519
Cdd:cd11386   95 GEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADG 174

                        170       180
                 ....*....|....*....|....*.
gi 691211240 520 LSQINTAINEMDTMTQKNAAMVQDSN 545
Cdd:cd11386  175 IQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 379-534 1.89e-39

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 142.19  E-value: 1.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  379 LVGSTRDAAASSSGIVRSAITAMSQIEESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRDLAG 458
Cdd:pfam00015   3 LAQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  459 RSATAAKEIKDLIEKSGA--------------QVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQATGLSQIN 524
Cdd:pfam00015  83 RSAQAAKEIEALIIEIQKqtndstasiestrqRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVN 162

                         170
                  ....*....|
gi 691211240  525 TAINEMDTMT 534
Cdd:pfam00015 163 QAVARMDQVT 172
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
 168-336 1.44e-06

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 51.23  E-value: 1.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 168 SQIVVLILSVAVLLLA--------MRRFVGRpLAQVNERIGALQAGDTTSPIPHADKgDEIGVVARALAEFCHASQLKLQ 239
Cdd:COG4192  324 SGILLLAIALLSLLLAvlinyfyvRRRLVKR-LNALSDAMAAIAAGDLDVPIPVDGN-DEIGRIARLLRVFRDQAIEKTQ 401

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 240 ADADMARQREQIDAERQANMSEAERSAR------TQRKVVDELGAALERLAAGDLTARVPDLGGEFTALQENFNRALSAL 313
Cdd:COG4192  402 ELETEIEERKRIEKNLRQTQDELIQAAKmavvgqTMTSLAHELNQPLNAMSMYLFSAKKALEQENYAQLPTSLDKIEGLI 481

                        170       180
                 ....*....|....*....|...
gi 691211240 314 EATVGTIDSAQQAVRQASGSLGA 336
Cdd:COG4192  482 ERMDKIIKSLRQFSRKSDTPLQP 504
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
5-585 8.45e-05

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 45.49  E-value: 8.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   5 IAITVIMVNLLGLVVTSFAISQMSGASQMETAERNWLKDTAQIGAQAAGGVKWGKTEAIRSAYQIFQDDPKLALTGFSAF 84
Cdd:COG2770   58 LLLLAALVLLALLLAAALLLLLLLLSLVALAALLLALLLLLLLALLLLLAALLLLLLLAALALLLLLLLLLAALLALLLA 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240  85 NQAGDQVDLWTRSDTPDADLAAVLSAKPDQATEPSFTQAEGSVVIVAPLPADKDGVSAGHIKTVWSTADIAMSARDFALK 164
Cdd:COG2770  138 LALLALLLGLAAARLLLAALLALAAALALALGAGELLLLADLAAAIAALLAALLLLLLGGLLLVVLLEAALAALLLLLLL 217

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 165 AmasqiVVLILSVAVLLLAMRRFVGRPLAQVNERIGALQAGDTTSPIPhADKGDEIGVVARALAEFchASQLKLQADADM 244
Cdd:COG2770  218 A-----LLALLLALLLALLLARRITRPLRRLAEAARRIAAGDLDVRIP-VSRKDEIGELARAFNRM--ADSLRESIEEAE 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 245 ARQREQIDAERQANMSEAERSARTQRKVVDELGAALERLAAGDLTARVPDLGGEFTALQENFNRALSALEATVGTIDSAQ 324
Cdd:COG2770  290 EEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLLLAADLLLALALAALLLLLALELLL 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 325 QAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLVGSTRDAAASSSGIVRSAITAMSQI 404
Cdd:COG2770  370 EAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALAAAAAAAEAAAAALELAAAAIAAAA 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 405 EESSSRIAQILKVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRDLAGRSATAAKEIKDLIEKSGAQVSSGVDL 484
Cdd:COG2770  450 AAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGAAAEELAEELLLLEGLLLLLLLEAEALEVA 529

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 485 VNRTGASMEQIEHQISEVAQKIGAISTAAREQATGLSQINTAINEMDTMTQKNAAMVQDSNLSSQKLSGECERLADVVKS 564
Cdd:COG2770  530 EELLELEEAALLLAAAAELAALLALLLALAAVEAAALLLAALLLAAVAALLELAALLLLLLAAAEALAALELELAAAAEA 609

                        570       580
                 ....*....|....*....|.
gi 691211240 565 FRLTGLAQPIRAAAPVQGSAQ 585
Cdd:COG2770  610 ALAEAELLEVAAAAEAGAALL 630
HAMP smart00304
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
267-318 3.20e-04

HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;


Pssm-ID: 197640 [Multi-domain]  Cd Length: 53  Bit Score: 38.77  E-value: 3.20e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 691211240   267 RTQRKVVDELGAALERLAAGDLTARVPDLG-GEFTALQENFNRALSALEATVG 318
Cdd:smart00304   1 RRLLRPLRRLAEAAQRIADGDLTVRLPVDGrDEIGELARAFNEMADRLEETIA 53
HAMP pfam00672
HAMP domain;
266-315 1.06e-03

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 37.22  E-value: 1.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 691211240  266 ARTQRKVVDELGAALERLAAGDLTARVPDLGG-EFTALQENFNRALSALEA 315
Cdd:pfam00672   3 ARRILRPLRRLAEAARRIASGDLDVRLPVSGRdEIGELARAFNQMAERLRE 53
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 235-517 1.08e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 235 QLKLQADADMARQREQIDAERQANMSEAERSARTQRkvvdELGAALE--RLAAGDLTARVPDLGGEFTALQENFNRALSA 312
Cdd:COG1196  228 ELLLLKLRELEAELEELEAELEELEAELEELEAELA----ELEAELEelRLELEELELELEEAQAEEYELLAELARLEQD 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 313 LEATVGTIDSAQQAVRQASGSLGASTDELARRTEQQAAALEQTAAALDEITATVKASSVQATEAGNLVGSTRDAAASSSG 392
Cdd:COG1196  304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 393 IVRSAITAMSQIEESSSRIAQILKVIDDIafQTNLLALNAGVEAARAGEAGkgfavVAQEVRDLAGRSATAAKEIKDLIE 472
Cdd:COG1196  384 LAEELLEALRAAAELAAQLEELEEAEEAL--LERLERLEEELEELEEALAE-----LEEEEEEEEEALEEAAEEEAELEE 456

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 691211240 473 KSGAQVSSGVDLVNRTGASMEQIEHQISEVAQKIGAISTAAREQA 517
Cdd:COG1196  457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 161-256 3.48e-03

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 40.33  E-value: 3.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240 161 FALKAMASQIVVLILSVAVLL-----LAMRRFVGRPLAQVNERIGALQAGDTTSPIPhADKGDEIGVVARALAEFchASQ 235
Cdd:COG5000    1 SGLQILFLLLLLLIALLLLLLalwlaLLLARRLTRPLRRLAEATRAVAAGDLSVRLP-VTGDDEIGELARAFNRM--TDQ 77

                         90       100
                 ....*....|....*....|.
gi 691211240 236 LKlqadadmaRQREQIDAERQ 256
Cdd:COG5000   78 LK--------EQREELEERRR 90
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 242-334 5.13e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691211240   242 ADMARQREQIDAERQANMSEAERSARTQRKVVDE---LGAALERLAAGDLTARVPDLGGEFTALQENFNRALSALEATVG 318
Cdd:TIGR02168  389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEieeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468

                           90
                   ....*....|....*.
gi 691211240   319 TIDSAQQAVRQASGSL 334
Cdd:TIGR02168  469 ELEEAEQALDAAEREL 484
HAMP pfam00672
HAMP domain;
184-227 6.43e-03

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 35.29  E-value: 6.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 691211240  184 MRRFVGRPLAQVNERIGALQAGDTTSPIPHaDKGDEIGVVARAL 227
Cdd:pfam00672   2 LARRILRPLRRLAEAARRIASGDLDVRLPV-SGRDEIGELARAF 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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