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Conserved domains on  [gi|752374147|gb|KIO31873|]
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hypothetical protein M407DRAFT_121622 [Tulasnella calospora MUT 4182]

Protein Classification

eS28 family ribosomal protein( domain architecture ID 10015195)

eS28 family ribosomal protein similar to Dictyostelium discoideum 40S ribosomal protein S28

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 6-70 4.09e-35

40S ribosomal protein S28; Provisional


:

Pssm-ID: 240261  Cd Length: 73  Bit Score: 114.46  E-value: 4.09e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 752374147  6 AGKVPVKLAKVSKVLGRTGSRGGVTQVRVDFMDDS---NRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:PTZ00085  5 QDTEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEgdaGRTLIRNVKGPVREGDILSLMETEREARRL 72
 
Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 6-70 4.09e-35

40S ribosomal protein S28; Provisional


Pssm-ID: 240261  Cd Length: 73  Bit Score: 114.46  E-value: 4.09e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 752374147  6 AGKVPVKLAKVSKVLGRTGSRGGVTQVRVDFMDDS---NRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:PTZ00085  5 QDTEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEgdaGRTLIRNVKGPVREGDILSLMETEREARRL 72
S1_S28E cd04457
S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ...
 12-70 6.95e-35

S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.


Pssm-ID: 239904  Cd Length: 60  Bit Score: 113.50  E-value: 6.95e-35
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 752374147 12 KLAKVSKVLGRTGSRGGVTQVRVDFMDDSNRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:cd04457   1 KLAEVIKVLGRTGSRGEVTQVRVEFMDDKGRSIIRNVKGPVREGDILMLLETEREARRL 59
Ribosomal_S28e pfam01200
Ribosomal protein S28e;
10-70 2.39e-34

Ribosomal protein S28e;


Pssm-ID: 460109  Cd Length: 64  Bit Score: 112.34  E-value: 2.39e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 752374147  10 PVKLAKVSKVLGRTGSRGGVTQVRVDFMDDSN--RSIIRNVKGPVREADILALLESEREARHL 70
Cdd:pfam01200  2 KAQPAEVIKVLGRTGSRGEVTQVRVEILEGRDkgRIITRNVKGPVRVGDILMLLETEREARRL 64
RPS28A COG2053
Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 14-71 1.64e-21

Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S28E/S33 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441656  Cd Length: 73  Bit Score: 80.02  E-value: 1.64e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 752374147 14 AKVSKVLGRTGSRGGVTQVRVDFMD--DSNRSIIRNVKGPVREADILALLESEREARHLH 71
Cdd:COG2053  12 AEVIEIIGRTGMTGEVTQVRVRILEgrDKGRIITRNVKGPVRVGDILMLRETEREARKLK 71
 
Name Accession Description Interval E-value
PTZ00085 PTZ00085
40S ribosomal protein S28; Provisional
 6-70 4.09e-35

40S ribosomal protein S28; Provisional


Pssm-ID: 240261  Cd Length: 73  Bit Score: 114.46  E-value: 4.09e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 752374147  6 AGKVPVKLAKVSKVLGRTGSRGGVTQVRVDFMDDS---NRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:PTZ00085  5 QDTEQPKLAKVIKVLGRTGSRGGVTQVRVQLMGEEgdaGRTLIRNVKGPVREGDILSLMETEREARRL 72
S1_S28E cd04457
S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide ...
 12-70 6.95e-35

S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.


Pssm-ID: 239904  Cd Length: 60  Bit Score: 113.50  E-value: 6.95e-35
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 752374147 12 KLAKVSKVLGRTGSRGGVTQVRVDFMDDSNRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:cd04457   1 KLAEVIKVLGRTGSRGEVTQVRVEFMDDKGRSIIRNVKGPVREGDILMLLETEREARRL 59
Ribosomal_S28e pfam01200
Ribosomal protein S28e;
10-70 2.39e-34

Ribosomal protein S28e;


Pssm-ID: 460109  Cd Length: 64  Bit Score: 112.34  E-value: 2.39e-34
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 752374147  10 PVKLAKVSKVLGRTGSRGGVTQVRVDFMDDSN--RSIIRNVKGPVREADILALLESEREARHL 70
Cdd:pfam01200  2 KAQPAEVIKVLGRTGSRGEVTQVRVEILEGRDkgRIITRNVKGPVRVGDILMLLETEREARRL 64
RPS28A COG2053
Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 14-71 1.64e-21

Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S28E/S33 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441656  Cd Length: 73  Bit Score: 80.02  E-value: 1.64e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 752374147 14 AKVSKVLGRTGSRGGVTQVRVDFMD--DSNRSIIRNVKGPVREADILALLESEREARHLH 71
Cdd:COG2053  12 AEVIEIIGRTGMTGEVTQVRVRILEgrDKGRIITRNVKGPVRVGDILMLRETEREARKLK 71
rps28e PRK04007
30S ribosomal protein S28e; Validated
 14-70 1.94e-19

30S ribosomal protein S28e; Validated


Pssm-ID: 235197  Cd Length: 70  Bit Score: 74.63  E-value: 1.94e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 752374147 14 AKVSKVLGRTGSRGGVTQVRVDFMD--DSNRSIIRNVKGPVREADILALLESEREARHL 70
Cdd:PRK04007  9 AEVIEIIGRTGMTGEVTQVKCRILEgrDKGRIITRNVKGPVRVGDILMLRETEREARKL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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