NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|818782536|gb|KKU23173|]
View 

Hemolysin-type calcium-binding region [Candidatus Woesebacteria bacterium GW2011_GWF1_46_13]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA03291 super family cl30053
envelope glycoprotein I; Provisional
 102-171 5.08e-03

envelope glycoprotein I; Provisional


The actual alignment was detected with superfamily member PHA03291:

Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 37.24  E-value: 5.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818782536 102 PEQQPTSTPTPEDPTATPTETLTPSETPTGTLTSTDTPTITQTPSQTGTATRTG-MPDPTNTPRPKTGGGG 171
Cdd:PHA03291 195 PRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGtTPEAEGTPAPPTPGGG 265
 
Name Accession Description Interval E-value
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 102-171 5.08e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 37.24  E-value: 5.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818782536 102 PEQQPTSTPTPEDPTATPTETLTPSETPTGTLTSTDTPTITQTPSQTGTATRTG-MPDPTNTPRPKTGGGG 171
Cdd:PHA03291 195 PRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGtTPEAEGTPAPPTPGGG 265
 
Name Accession Description Interval E-value
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 102-171 5.08e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 37.24  E-value: 5.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818782536 102 PEQQPTSTPTPEDPTATPTETLTPSETPTGTLTSTDTPTITQTPSQTGTATRTG-MPDPTNTPRPKTGGGG 171
Cdd:PHA03291 195 PRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGtTPEAEGTPAPPTPGGG 265
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 106-182 8.49e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 36.71  E-value: 8.49e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 818782536 106 PTSTPTPEDPTATPTETLTPSETPTGTLTSTDTPTITQTPSQTGTATRTGM-PDPTNTPRPKTGGGGPPETDTLSAIG 182
Cdd:PRK14950 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVpPRPVAPPVPHTPESAPKLTRAAIPVD 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH