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Conserved domains on  [gi|966195287|gb|KTF17773|]
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dystroglycan-type cadherin-like protein [Pseudoalteromonas sp. H103]

Protein Classification

VCBS_repeat domain-containing protein( domain architecture ID 10020118)

VCBS_repeat domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VCBS_repeat TIGR01965
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 63-154 7.61e-21

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


:

Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 86.62  E-value: 7.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966195287   63 TGELSITDAQTNEAVFKAQNNNATAYGSFSLTEDGNWSYTVNVDYATVSALSEGETLLDEVIVTSADGTTATVSITIIGT 142
Cdd:TIGR01965   1 SGQLTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGTSQTVTITITGA 80

                          90
                  ....*....|....*...
gi 966195287  143 ------AGPDDFIVSEET 154
Cdd:TIGR01965  81 ndaaviGGADTGSVTEDS 98
 
Name Accession Description Interval E-value
VCBS_repeat TIGR01965
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 63-154 7.61e-21

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 86.62  E-value: 7.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966195287   63 TGELSITDAQTNEAVFKAQNNNATAYGSFSLTEDGNWSYTVNVDYATVSALSEGETLLDEVIVTSADGTTATVSITIIGT 142
Cdd:TIGR01965   1 SGQLTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGTSQTVTITITGA 80

                          90
                  ....*....|....*...
gi 966195287  143 ------AGPDDFIVSEET 154
Cdd:TIGR01965  81 ndaaviGGADTGSVTEDS 98
 
Name Accession Description Interval E-value
VCBS_repeat TIGR01965
VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long ...
 63-154 7.61e-21

VCBS repeat; This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.


Pssm-ID: 273899 [Multi-domain]  Cd Length: 99  Bit Score: 86.62  E-value: 7.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966195287   63 TGELSITDAQTNEAVFKAQNNNATAYGSFSLTEDGNWSYTVNVDYATVSALSEGETLLDEVIVTSADGTTATVSITIIGT 142
Cdd:TIGR01965   1 SGQLTISDADAGQAHFIAQTDAAGQYGTFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGTSQTVTITITGA 80

                          90
                  ....*....|....*...
gi 966195287  143 ------AGPDDFIVSEET 154
Cdd:TIGR01965  81 ndaaviGGADTGSVTEDS 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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