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Conserved domains on  [gi|973165468|gb|KUL05241|]
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hypothetical protein XE11_0103 [Methanomicrobiales archaeon 53_19]

Protein Classification

ATP-binding cassette domain-containing protein; ABC transporter ATP-binding protein( domain architecture ID 1904046)

ATP-binding cassette domain-containing protein may function as an ABC transporter ATP-binding protein is the ATPase, the catalytic subunit of an ATP transporter complex responsible for coupling the energy of ATP hydrolysis to the import of one or more from a variety of substrates; ABC transporter ATP-binding protein containing two ATP-binding domains; with similarity to cobalt import ATP-binding protein CbiO, which is part of the group-I cobalt energy-coupling factor (ECF) transporter CbiMNQO

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CcmA super family cl43484
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
14-112 1.17e-04

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


The actual alignment was detected with superfamily member COG1664:

Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 39.11  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468  14 PGSFFEGNVQIHGDFLVpqRTHFWGRLVVNGTLEMGPECSVEGPVVCKNAIIgrDSRIKGpllvdenaticdrvhlhSIE 93
Cdd:COG1664   19 EGTTIKGDITSEGDLRI--DGTVEGDITAEGTLVIGEGGVVEGDIEADNVVI--NGTVEG-----------------NIT 77

                         90       100
                 ....*....|....*....|
gi 973165468  94 AGGDIVLRP-GVMVGDVKAE 112
Cdd:COG1664   78 ASEKLELLStARVEGDITAG 97
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
14-112 1.17e-04

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 39.11  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468  14 PGSFFEGNVQIHGDFLVpqRTHFWGRLVVNGTLEMGPECSVEGPVVCKNAIIgrDSRIKGpllvdenaticdrvhlhSIE 93
Cdd:COG1664   19 EGTTIKGDITSEGDLRI--DGTVEGDITAEGTLVIGEGGVVEGDIEADNVVI--NGTVEG-----------------NIT 77

                         90       100
                 ....*....|....*....|
gi 973165468  94 AGGDIVLRP-GVMVGDVKAE 112
Cdd:COG1664   78 ASEKLELLStARVEGDITAG 97
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 18-112 5.98e-03

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 33.93  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468   18 FEGNVQIHGDFLvpqrthfwGRLVVNGTLEMGPECSVEGPVVCKNAIIgrDSRIKGPLLVDEnaticdRVHLHSieaggd 97
Cdd:pfam04519   7 FEGDLRIDGKVE--------GNITSKGTLVIGEGGRVEGDIKAESVVI--AGTVEGNITASE------KLELLS------ 64

                          90
                  ....*....|....*
gi 973165468   98 ivlrPGVMVGDVKAE 112
Cdd:pfam04519  65 ----TARVEGDIKTG 75
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
14-112 1.17e-04

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 39.11  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468  14 PGSFFEGNVQIHGDFLVpqRTHFWGRLVVNGTLEMGPECSVEGPVVCKNAIIgrDSRIKGpllvdenaticdrvhlhSIE 93
Cdd:COG1664   19 EGTTIKGDITSEGDLRI--DGTVEGDITAEGTLVIGEGGVVEGDIEADNVVI--NGTVEG-----------------NIT 77

                         90       100
                 ....*....|....*....|
gi 973165468  94 AGGDIVLRP-GVMVGDVKAE 112
Cdd:COG1664   78 ASEKLELLStARVEGDITAG 97
FapA COG1315
Flagellar assembly protein FapA, interacts with EIIAGlc [Cell motility];
18-132 3.84e-04

Flagellar assembly protein FapA, interacts with EIIAGlc [Cell motility];


Pssm-ID: 440926 [Multi-domain]  Cd Length: 401  Bit Score: 39.03  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468  18 FEGNVQIHGD----FLVpqRTHfwGRLVVNGTLEMGpECSVEGPVVCKNAIIGRDS---RIKGPLLVD--ENATIcdrvh 88
Cdd:COG1315  227 FDGSVIIKGDvlsgFSV--KAT--GDIEVGGVVEGA-TIEAGGDIIIKGGIIGKGKgviKAGGNVTAKfiENATV----- 296

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 973165468  89 lhsiEAGGDIVLRPGVMVGDVKAENSVLIYGKitSGTLVGRNVR 132
Cdd:COG1315  297 ----EAGGDIIVSDYIMHSNVKAGGSVIVGGR--KGVIIGGSIR 334
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 18-112 5.98e-03

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 33.93  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165468   18 FEGNVQIHGDFLvpqrthfwGRLVVNGTLEMGPECSVEGPVVCKNAIIgrDSRIKGPLLVDEnaticdRVHLHSieaggd 97
Cdd:pfam04519   7 FEGDLRIDGKVE--------GNITSKGTLVIGEGGRVEGDIKAESVVI--AGTVEGNITASE------KLELLS------ 64

                          90
                  ....*....|....*
gi 973165468   98 ivlrPGVMVGDVKAE 112
Cdd:pfam04519  65 ----TARVEGDIKTG 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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