|
Name |
Accession |
Description |
Interval |
E-value |
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
2-348 |
0e+00 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 593.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 2 EARDKALNAALEQIEKGFGKGSIMKLGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAEV 81
Cdd:COG0468 8 SEKEKALEAALSQIEKQFGKGSIMRLGDKARQDVEVISTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLALHAIAEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 82 QKQNslaggpGVAAYIDAEHALDISYARRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIEG 161
Cdd:COG0468 88 QKAG------GIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDLIVVDSVAALVPKAEIEG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 162 DMGDTHVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRAKIgGIGYGPTEVTTGGNALKFYATQRIEIRFKSKVMDGEN 241
Cdd:COG0468 162 EMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKI-GVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 242 RLGNLVRAKVVKNKLAPPFREVEFEIIFGCGISREGELLDIGVAMNIVDKSGSWYSFNGERLGQGKENARRFLQENRDIA 321
Cdd:COG0468 241 VIGNRTRVKVVKNKVAPPFKEAEFDIMYGEGISKEGELLDLAVELGIIEKSGAWYSYGGERLGQGRENAKQFLKENPELA 320
|
330 340
....*....|....*....|....*..
gi 1001958291 322 FEIETKLRGAYGLIPEKMVEVIEPHDA 348
Cdd:COG0468 321 EEIEAKIREKLGLGAVSEAAAAEEEED 347
|
|
| recA |
PRK09354 |
recombinase A; Provisional |
1-353 |
0e+00 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 590.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 1 MEARDKALNAALEQIEKGFGKGSIMKLGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAE 80
Cdd:PRK09354 4 DEEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 81 VQKQNslaggpGVAAYIDAEHALDISYARRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIE 160
Cdd:PRK09354 84 AQKAG------GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 161 GDMGDTHVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRAKIgGIGYGPTEVTTGGNALKFYATQRIEIRFKSKVMDGE 240
Cdd:PRK09354 158 GEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKI-GVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 241 NRLGNLVRAKVVKNKLAPPFREVEFEIIFGCGISREGELLDIGVAMNIVDKSGSWYSFNGERLGQGKENARRFLQENRDI 320
Cdd:PRK09354 237 EVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPEL 316
|
330 340 350
....*....|....*....|....*....|...
gi 1001958291 321 AFEIETKLRGAYGLIPEKMVEVIEPHDARIAGE 353
Cdd:PRK09354 317 ADEIEKKIREKLGLSAAAAEEEEEEDEEEEEEE 349
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
4-329 |
0e+00 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 533.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 4 RDKALNAALEQIEKGFGKGSIMKLGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAEVQK 83
Cdd:TIGR02012 2 KQKALEAALAQIEKQFGKGSIMRLGEKTVMDVETISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 84 QNslaggpGVAAYIDAEHALDISYARRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIEGDM 163
Cdd:TIGR02012 82 AG------GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 164 GDTHVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRAKIgGIGYGPTEVTTGGNALKFYATQRIEIRFKSKVMDGENRL 243
Cdd:TIGR02012 156 GDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKI-GVMFGNPETTTGGNALKFYASVRLDIRRIGTVKQGEEVV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 244 GNLVRAKVVKNKLAPPFREVEFEIIFGCGISREGELLDIGVAMNIVDKSGSWYSFNGERLGQGKENARRFLQENRDIAFE 323
Cdd:TIGR02012 235 GNRTKVKVVKNKVAPPFREAEFDILYGEGISKLGEIIDLAVELDIIKKSGSWYSYGDEKLGQGRENAKAFLKENPELAQE 314
|
....*.
gi 1001958291 324 IETKLR 329
Cdd:TIGR02012 315 IEKKVR 320
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
6-274 |
3.37e-158 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 444.15 E-value: 3.37e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 6 KALNAALEQIEKGFGKGSIMKLGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQN 85
Cdd:pfam00154 1 KALEAALKQIEKQFGKGSIMKLGDEKKLDVETISTGSLALDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 86 slaggpGVAAYIDAEHALDISYARRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIEGDMGD 165
Cdd:pfam00154 81 ------GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDLIVVDSVAALVPKAEIEGEMGD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 166 THVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRAKIGGIGYGPtEVTTGGNALKFYATQRIEIRFKSKVMDGENRLGN 245
Cdd:pfam00154 155 SHVGLQARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNP-ETTTGGRALKFYASVRLDIRRIGQIKQGEEVIGN 233
|
250 260
....*....|....*....|....*....
gi 1001958291 246 LVRAKVVKNKLAPPFREVEFEIIFGCGIS 274
Cdd:pfam00154 234 KTKVKVVKNKVAPPFKEAEFDIMYGEGIS 262
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
34-275 |
5.00e-146 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 412.33 E-value: 5.00e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 34 DIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNslaggpGVAAYIDAEHALDISYARRLGV 113
Cdd:cd00983 1 DVEVIPTGSLSLDIALGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLG------GTAAFIDAEHALDPEYAKKLGV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 114 NTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIEGDMGDTHVGLQARLMSQALRKLTAAIHRSMAAV 193
Cdd:cd00983 75 DIDNLLVSQPDTGEQALEIADTLIRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 194 IFINQVRAKIgGIGYGPTEVTTGGNALKFYATQRIEIRFKSKVMDGENRLGNLVRAKVVKNKLAPPFREVEFEIIFGCGI 273
Cdd:cd00983 155 IFINQLREKI-GVMFGNPETTTGGNALKFYASVRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFDILYGEGI 233
|
..
gi 1001958291 274 SR 275
Cdd:cd00983 234 SR 235
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
4-255 |
2.16e-105 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 327.05 E-value: 2.16e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 4 RDKALNAALEQIEKGFGKGSIMKLGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLALHGVAEVQk 83
Cdd:PRK09519 7 REKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 84 qnslAGGpGVAAYIDAEHALDISYARRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVIDSVAALVPAAEIEGDM 163
Cdd:PRK09519 86 ----AAG-GVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 164 GDTHVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRAKIgGIGYGPTEVTTGGNALKFYATQRIEIRFKSKVMDGENRL 243
Cdd:PRK09519 161 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI-GVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAV 239
|
250
....*....|..
gi 1001958291 244 GNLVRAKVVKNK 255
Cdd:PRK09519 240 GNRTRVKVVKNK 251
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
57-231 |
9.84e-42 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 144.42 E-value: 9.84e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 57 GRIIEVYGPESSGKTTLALHGVAevqkqNSLAGGPGVAaYIDAEHALDISYARRL-----------GVNTDELLISQPDN 125
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAA-----NALLLGGGVV-WIDTEGAFPPSRLVQIleaspsselelAEALSRLLYFRPPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 126 GEQALDIAEILVRSGA----VELIVIDSVAALVPAAEIEGDMGDTHVGLQARLMSQALRKLTAAIHRSMAAVIFINQVRA 201
Cdd:cd01393 75 TLAHLLALDSLPESLFpppnTSLVVVDSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTT 154
|
170 180 190
....*....|....*....|....*....|
gi 1001958291 202 KIGGIGYGPTEVTTGGNALKFYATQRIEIR 231
Cdd:cd01393 155 KIRGGSGASLVPPALGNTWEHSVSTRLLLY 184
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
220-334 |
9.45e-26 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 108.64 E-value: 9.45e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 220 LKFYATQRIEIRFKSKVMDGE-NRLGNLVRAKVVKNKLAPPFREVEFEIIFGCGISREGELLDIGVAMNIVDKSGSWYSF 298
Cdd:PRK09519 655 LRYSVIREVLPTRRARTFDLEvEELHTLVAEGVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTY 734
|
90 100 110
....*....|....*....|....*....|....*.
gi 1001958291 299 NGERLGQGKENARRFLQENRDIAFEIETKLRGAYGL 334
Cdd:PRK09519 735 EGEQLGQGKENARNFLVENADVADEIEKKIKEKLGI 770
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
38-267 |
2.88e-19 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 86.20 E-value: 2.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVA-EVQKQNSLAGGPGVAAYIDAEHALD----ISYARRLG 112
Cdd:pfam08423 19 ITTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLC-HTLCvTCQLPLEMGGGEGKALYIDTEGTFRperlVAIAERYG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 113 VNTDELLISQP-------DNGEQALDIAEILVRSGAVELIVIDSVAALVpAAEIEGdMGDthvgLQARLM--SQALRKLT 183
Cdd:pfam08423 97 LDPEDVLDNVAyaraynsEHQMQLLQQAAAMMSESRFALLIVDSATALY-RTDFSG-RGE----LAERQQhlAKFLRTLQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 184 AAIHRSMAAVIFINQVRAKIGGIGY---GPTEVTTGGNALKFYATQRIEIRfKSKvmdGENRLgnlvrAKVVKnklAP-- 258
Cdd:pfam08423 171 RLADEFGVAVVITNQVVAQVDGAAGmfsGDPKKPIGGHIMAHASTTRLSLR-KGR---GEQRI-----CKIYD---SPcl 238
|
....*....
gi 1001958291 259 PFREVEFEI 267
Cdd:pfam08423 239 PESEAVFAI 247
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
45-204 |
1.26e-17 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 81.18 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 45 LDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAAYIDAEHALDIsyaRRLgvntDELLISQPD 124
Cdd:cd19491 1 LDELLG-GGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPS---KRL----QQLASSLPK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 125 NGEQALDIAE------------------------ILVRSGAVELIVIDSVAALVPAaeiEGDMGDTHVGLQARLMSQALR 180
Cdd:cd19491 73 RYHLEKAKNFldnifvehvadletlehclnyqlpALLERGPIRLVVIDSIAALFRS---EFDTSRSDLVERAKYLRRLAD 149
|
170 180
....*....|....*....|....
gi 1001958291 181 KLTAAIHRSMAAVIFINQVRAKIG 204
Cdd:cd19491 150 HLKRLADKYNLAVVVVNQVTDRFD 173
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
5-267 |
1.46e-16 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 79.78 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 5 DKALNAALEQIEKGFGKGSiMKLGEREqvDIPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQ 84
Cdd:PLN03186 75 EKILEAASKLVPLGFTTAS-QLHAQRQ--EIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLP 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 85 NSLAGGPGVAAYIDAEHALD----ISYARRLGVNTDELL----ISQPDNGEQALdiaEILVRSGA------VELIVIDSV 150
Cdd:PLN03186 151 LDQGGGEGKAMYIDTEGTFRpqrlIQIAERFGLNGADVLenvaYARAYNTDHQS---ELLLEAASmmaetrFALMIVDSA 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 151 AALVpAAEIEGdMGDthvgLQAR--LMSQALRKLTAAIHRSMAAVIFINQVRAKIGGIGY--GPTEVTTGGNALKFYATQ 226
Cdd:PLN03186 228 TALY-RTEFSG-RGE----LSARqmHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFfaGPQLKPIGGNIMAHASTT 301
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1001958291 227 RIEIRfKSKvmdGENRLgnlvrAKVVKNKLAPPfREVEFEI 267
Cdd:PLN03186 302 RLALR-KGR---GENRI-----CKVISSPCLPE-AEARFSI 332
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
38-268 |
2.05e-15 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 74.27 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLaggpgvAAYIDAEhALDISYARRL-GVNTD 116
Cdd:cd01394 1 LSTGSKSLDSLLG-GGVERGTITQIYGPPGSGKTNICLQLAVEAAKQGKK------VVYIDTE-GLSPERFQQIaGERFE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 117 ELL----ISQP-DNGEQALDIAEI--LVRSGAVELIVIDSVAALVPAAeiegDMGDThvGLQARLMSQALRKLTAAIHRS 189
Cdd:cd01394 73 SIAsniiVFEPySFDEQGVAIQEAekLLKSDKVDLVVVDSATALYRLE----LGDDS--EANRELSRQMSKLLSIARKYD 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 190 MAAVIfINQVRAKIGgigygpTEVTT--GGNALKFYATQRIEIrfkskvmdgENRLGNLVRAKVVKNKLAPPFREVEFEI 267
Cdd:cd01394 147 IPVVI-TNQVYSDID------DDRLKpvGGTLLEHWSKAIIRL---------EKSPPGLRRATLEKHRSRPEGQSAGFRI 210
|
.
gi 1001958291 268 I 268
Cdd:cd01394 211 T 211
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
46-214 |
3.19e-15 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 73.89 E-value: 3.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 46 DAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAAYIDAEHALDISY-----------ARRLGVN 114
Cdd:cd19493 1 DTALA-GGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERlaeiaearfpeAFSGFME 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 115 TDE--------LLISQPDNGEQALDIAEIL---VRSGAVELIVIDSVAALVPAA--EIEGDMGDTHVGLqARLMSqALRK 181
Cdd:cd19493 80 ENEraeemlkrVAVVRVTTLAQLLERLPNLeehILSSGVRLVVIDSIAALVRREfgGSDGEVTERHNAL-AREAS-SLKR 157
|
170 180 190
....*....|....*....|....*....|...
gi 1001958291 182 LTaaiHRSMAAVIFINQVRAKIGGIGYGPTEVT 214
Cdd:cd19493 158 LA---EEFRIAVLVTNQATTHFGDAGDGSSGVT 187
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
38-268 |
3.23e-14 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 71.05 E-value: 3.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNslaggpGVAAYIDAEhALDISYARRL-GVNTD 116
Cdd:PRK09361 5 LPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTE-GLSPERFKQIaGEDFE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 117 ELL----ISQP-DNGEQALDIAEI--LVRSGaVELIVIDSVAALVPAA-EIEGDMGDTHVGLQARLmsQALRKLtAAIHR 188
Cdd:PRK09361 77 ELLsniiIFEPsSFEEQSEAIRKAekLAKEN-VGLIVLDSATSLYRLElEDEEDNSKLNRELGRQL--THLLKL-ARKHD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 189 SmaAVIFINQVRAKIGGIGYGPtevtTGGNALKfYATQRIeIRFkskvmdgENRLGNLVRAKVVKNKLAPPFREVEFEII 268
Cdd:PRK09361 153 L--AVVITNQVYSDIDSDGLRP----LGGHTLE-HWSKTI-LRL-------EKFRNGKRRATLEKHRSRPEGESAEFRIT 217
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
38-249 |
8.93e-14 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 69.87 E-value: 8.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAAYIDAEHALD----ISYARRLGV 113
Cdd:cd01123 1 ITTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRperlRAIAQRFGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 114 NTDELLIS-------QPDNGEQALDIAEILVRSGAVELIVIDSVAALVpAAEIEGdMGDthvgLQARlmSQALRKLTAAI 186
Cdd:cd01123 80 DPDDVLDNvayarafNSDHQTQLLDQAAAMMVESRFKLLIVDSATALY-RTDYSG-RGE----LSAR--QMHLAKFLRML 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1001958291 187 HRSM----AAVIFINQVRAKIGGIG--YGPTEVTTGGNALKFYATQRIEIRfKSKvmdGENRLGNLVRA 249
Cdd:cd01123 152 QRLAdefgVAVVVTNQVVAQVDGAMmfAADPKKPIGGNILAHASTTRLYLR-KGR---GETRICKIYDS 216
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
5-268 |
4.98e-13 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 69.42 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 5 DKALNAALEQIEKGFGKGSIMKLGEREQVDIpviSTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQ 84
Cdd:PLN03187 78 DKICEAAEKLLNQGFITGSDALLKRKSVVRI---TTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 85 NSLAGGPGVAAYIDAEHALD----ISYARRLGVNT----DELLISQPDNGEQALDIAEILVRSGAVE---LIVIDSVAAL 153
Cdd:PLN03187 154 TEMGGGNGKVAYIDTEGTFRpdriVPIAERFGMDAdavlDNIIYARAYTYEHQYNLLLGLAAKMAEEpfrLLIVDSVIAL 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 154 VPAAEI-EGDMGDThvglQARLmSQALRKLTAAIHRSMAAVIFINQVRAKIGGIGY--GPTEvTTGGNALKFYATQRIEI 230
Cdd:PLN03187 234 FRVDFTgRGELAER----QQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFisDPKK-PAGGHVLAHAATIRLML 307
|
250 260 270
....*....|....*....|....*....|....*...
gi 1001958291 231 RfKSKvmdGENRLgnlvrAKVVKnklAPPFREVEFEII 268
Cdd:PLN03187 308 R-KGK---GEQRV-----CKVFD---APNLPEAEAEFQ 333
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
38-247 |
1.02e-12 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 66.96 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVA-EVQKQNSLAGGPGVAAYIDAEHALD----ISYARRLG 112
Cdd:cd19513 1 ITTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLAvTCQLPIDQGGGEGKALYIDTEGTFRperlLAIAERYG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 113 VNTDELL----ISQPDNGEQALdiaEILVRSGAV------ELIVIDSVAALVpAAEIEGdMGDthvgLQARLM--SQALR 180
Cdd:cd19513 79 LNGEDVLdnvaYARAYNTDHQM---QLLIQASAMmaesryALLIVDSATALY-RTDYSG-RGE----LSARQMhlAKFLR 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1001958291 181 KLTAAIHRSMAAVIFINQVRAKIGGIGY--GPTEVTTGGNALKFYATQRIEIRfKSKvmdGENRLGNLV 247
Cdd:cd19513 150 MLQRLADEFGVAVVITNQVVAQVDGAAMfaGDPKKPIGGNIMAHASTTRLYLR-KGR---GETRICKIY 214
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
29-267 |
1.52e-12 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 67.60 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 29 EREQVDIPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVA-EVQKQNSLAGGPGVAAYIDAEHALD--- 104
Cdd:PRK04301 75 LERRKNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQIC-HQLAvNVQLPEEKGGLEGKAVYIDTEGTFRper 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 105 -ISYARRLGVNTDELLisqpDN---------GEQAL--DIAEILVRSG-AVELIVIDSVAALVPAAEI-EGDMGDThvgl 170
Cdd:PRK04301 153 iEQMAEALGLDPDEVL----DNihvaraynsDHQMLlaEKAEELIKEGeNIKLVIVDSLTAHFRAEYVgRGNLAER---- 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 171 QARLMSQ--ALRKLtAAIHRsmAAVIFINQVRAKIGGIgYGPTEVTTGGNALKFYATQRIEIRfKSKvmdGENRLgnlvr 248
Cdd:PRK04301 225 QQKLNKHlhDLLRL-ADLYN--AAVVVTNQVMARPDAF-FGDPTQPIGGHILGHTATFRIYLR-KSK---GNKRI----- 291
|
250 260
....*....|....*....|.
gi 1001958291 249 AKVVKnklAP--PFREVEFEI 267
Cdd:PRK04301 292 ARLVD---SPhlPEGEAVFRI 309
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
5-243 |
2.12e-12 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 67.06 E-value: 2.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 5 DKALNAALEQIEKGFGKGSimKLGEREQvDIPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVA-EVQK 83
Cdd:TIGR02239 48 DKILAEAAKLVPMGFTTAT--EFHQRRQ-EVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAvTCQL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 84 QNSLAGGPGVAAYIDAEHALD----ISYARRLGVNTDELLIS-------QPDNGEQALDIAEILVRSGAVELIVIDSVAA 152
Cdd:TIGR02239 123 PIDQGGGEGKALYIDTEGTFRperlLAIAERYGLNPEDVLDNvayarayNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 153 LVpAAEIEGdMGDthvgLQARLMSQA--LRKLTAAIHRSMAAVIFINQVRAKIGGIGY---GPTEVTTGGNALKFYATQR 227
Cdd:TIGR02239 203 LY-RTDFSG-RGE----LSARQMHLArfLRSLQRLADEFGVAVVITNQVVAQVDGAGSmfaGDPKKPIGGNIMAHASTTR 276
|
250
....*....|....*.
gi 1001958291 228 IEIRfKSKvmdGENRL 243
Cdd:TIGR02239 277 LSLR-KGR---GEQRI 288
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
5-242 |
4.80e-12 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 66.17 E-value: 4.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 5 DKALNAALEQIEKGFGKGSIMkLGEREQvdIPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVA-EVQK 83
Cdd:PTZ00035 70 EKIKEAASKLVPMGFISATEY-LEARKN--IIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLCvTCQL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 84 QNSLAGGPGVAAYIDAE--------------------HALD-ISYARrlGVNTDELLisqpdngeQALDIAEILVRSGAV 142
Cdd:PTZ00035 145 PIEQGGGEGKVLYIDTEgtfrperivqiaerfgldpeDVLDnIAYAR--AYNHEHQM--------QLLSQAAAKMAEERF 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 143 ELIVIDSVAALVpAAEIEGdMGDthvgLQARlmSQALRKLTAAIHRsMA-----AVIFINQVRAKIGGIG--YGPTEVTT 215
Cdd:PTZ00035 215 ALLIVDSATALF-RVDYSG-RGE----LAER--QQHLGKFLRALQK-LAdefnvAVVITNQVMADVDGASmfVADPKKPI 285
|
250 260
....*....|....*....|....*..
gi 1001958291 216 GGNALKFYATQRIEIRfKSKvmdGENR 242
Cdd:PTZ00035 286 GGHIIAHASTTRLSLR-KGR---GEQR 308
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
57-235 |
2.91e-11 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 61.47 E-value: 2.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 57 GRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAAYIDAEHALDISYARRLgvNTDELLisqpdngeQALDIAEIL 136
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSFNIHYFRVH--DYVELL--------ALINSLPKF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 137 VRSGA-VELIVIDSVAALVPAAEiegdmgdTHVGLQARL---MSQALRKLtAAIHRsmAAVIFINQVRAKIGGIGyGPTE 212
Cdd:cd19492 71 LEDHPkVKLIVVDSIAFPFRHDF-------DDLAQRTRLlngLAQLLHSL-ARQHN--LAVVLTNQVTTKISEDG-QSQL 139
|
170 180
....*....|....*....|...
gi 1001958291 213 VTTGGNALKFYATQRIEIRFKSK 235
Cdd:cd19492 140 VPALGESWSHACTTRLFLTWDEK 162
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
38-243 |
3.62e-11 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 62.37 E-value: 3.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLAlHGVAEV-QKQNSLAGGPGVAAYIDAEHAL------DIsyARR 110
Cdd:cd19514 1 ISTGSTELDKLLG-GGIESMSITEVFGEFRTGKTQLS-HTLCVTaQLPGSMGGGGGKVAYIDTEGTFrpdrirPI--AER 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 111 LGVNTDELL----ISQPDNGEQALDI----AEILVRSGAVELIVIDSVAALVPAA-EIEGDMGDThvglQARLmSQALRK 181
Cdd:cd19514 77 FGVDHDAVLdnilYARAYTSEHQMELldyvAAKFHEEAVFRLLIIDSIMALFRVDfSGRGELAER----QQKL-AQMLSR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1001958291 182 LTAAIHRSMAAVIFINQVRAKIGG---IGYGPTEvTTGGNALKFYATQRIEIRfKSKvmdGENRL 243
Cdd:cd19514 152 LQKISEEYNVAVFITNQVTADPGAamtFQADPKK-PIGGHILAHASTTRISLR-KGR---GEERI 211
|
|
| COG4544 |
COG4544 |
Uncharacterized conserved protein [Function unknown]; |
1-148 |
3.92e-11 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443609 [Multi-domain] Cd Length: 230 Bit Score: 62.25 E-value: 3.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 1 MEARDKALNAALEQIEKGfgkgsimklGEREQVDIPVISTGSLALDAALGVGGFPRGRIIEVYGPE-SSGKTTLALHGVA 79
Cdd:COG4544 1 MSAARTALAALRRRIWRG---------EGLAAAARAVLPTGFAALDAALPGGGLPRGALHEILGPApGIGELGLLLPLLA 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1001958291 80 evqkQNSLAGGPgvAAYIDAEHALdisYA---RRLGVNTDELLISQPDNGEQALDIAEILVRSGAVELIVID 148
Cdd:COG4544 72 ----RLAQAGGP--VLWIAPPYDL---YApglAAAGLDPERLLLVRARRPADALWAAEEALRSGACGAVVAW 134
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
38-212 |
4.53e-11 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 61.86 E-value: 4.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQnslaGGPGVaaYIDAEHALD--ISYARRLGVNT 115
Cdd:COG0467 2 VPTGIPGLDELLG-GGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRR----GEKGL--YVSFEESPEqlLRRAESLGLDL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 116 DELL------ISQPDNGEQALDIAEIL------VRSGAVELIVIDSVAALVPAAEIEGDmgdthvglqARLMsqaLRKLT 183
Cdd:COG0467 75 EEYIesgllrIIDLSPEELGLDLEELLarlreaVEEFGAKRVVIDSLSGLLLALPDPER---------LREF---LHRLL 142
|
170 180
....*....|....*....|....*....
gi 1001958291 184 AAIHRSMAAVIFINQVRAKIGGIGYGPTE 212
Cdd:COG0467 143 RYLKKRGVTTLLTSETGGLEDEATEGGLS 171
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
38-249 |
8.11e-11 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 61.23 E-value: 8.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAAYIDAEHALD----ISYARRLGV 113
Cdd:cd19515 1 ISTGSKELDKLLG-GGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRperiMQMAKALGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 114 NTDELL----ISQPDNGEQALDIAE----ILVRSGAVELIVIDSVAALVPAaeiegdmgdTHVG---LQARlmSQALRKL 182
Cdd:cd19515 80 DPDEVLdniyVARAYNSNHQMLLVEkaedLIKEGNNIKLLIVDSLTSHFRA---------EYVGrgtLAER--QQKLNKH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1001958291 183 TAAIHRSM----AAVIFINQVRAKIGGIGYGPTEvTTGGNALKFYATQRIEIRfKSKvmdGENRLGNLVRA 249
Cdd:cd19515 149 LHDLHRLAdlynIAVLVTNQVMAKPDAFFGDPTQ-AIGGHILGHAATFRVYLR-KGK---GGKRIARLVDS 214
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
45-274 |
1.36e-10 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 60.12 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 45 LDAALGvGGFPRGRIIEVYGPESSGKTTLALhgvaevQKQNSLAGGPGVAAYIDAE-----HALDISYARRLGVNtDELL 119
Cdd:TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICM------ILAVNAARQGKKVVYIDTEglspeRFKQIAEDRPERAL-SNFI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 120 ISQP---DNGEQALDIAEILVRSGAVELIVIDSVAALVpAAEIEGDMGDTHVGLQARLmsQALRKLTAaihRSMAAVIFI 196
Cdd:TIGR02237 73 VFEVfdfDEQGVAIQKTSKFIDRDSASLVVVDSFTALY-RLELSDDRISRNRELARQL--TLLLSLAR---KKNLAVVIT 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1001958291 197 NQVRAKIGGIGYGPtevtTGGNALkfyatqrieiRFKSKVMDGENRLGNLVRAKVVKNKLAPPFREVEFEIIFGcGIS 274
Cdd:TIGR02237 147 NQVYTDVNNGTLRP----LGGHLL----------EHWSKVILRLEKFRGRRLATLEKHRSRPEGESVYFRITDD-GIE 209
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
6-249 |
3.53e-10 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 60.53 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 6 KALNAALEQIEKGFGKGSIMKLGEREQVDipVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQN 85
Cdd:TIGR02236 47 KIIQAARKAADLGGFETADDVLERRKTIG--KITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 86 SLAGGPGVAAYIDAEHALD----ISYARRLGVNTDELL----ISQPDNG-------EQALDIAEILvrSGAVELIVIDSV 150
Cdd:TIGR02236 124 EKGGLGGKAVYIDTENTFRperiMQMAEARGLDPDEVLkniyVARAYNSnhqmllvEKAEDLIKEL--NNPVKLLIVDSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 151 AALVPAaeiegdmgdTHVGLQARLMSQalRKLTAAIHRSM-------AAVIFINQVRAKIGGIgYGPTEVTTGGNALKFY 223
Cdd:TIGR02236 202 TSHFRA---------EYVGRGALAERQ--QKLNKHLHDLLrladlynAAVVVTNQVMARPDAF-FGDPTRPIGGHILGHA 269
|
250 260
....*....|....*....|....*.
gi 1001958291 224 ATQRIEIRfKSKvmdGENRLGNLVRA 249
Cdd:TIGR02236 270 ATFRVYLR-KGK---GDKRIARLVDS 291
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
2-249 |
7.49e-10 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 59.41 E-value: 7.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 2 EAR-DKALNAALEQIEKGFGKGSIMkLGEREQVdiPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAE 80
Cdd:TIGR02238 44 EAKvDKIKEAASKIINPGFITAFEI-SQKRKKV--LKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVT 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 81 VQKQNSLAGGPGVAAYIDAEHALD----ISYARRLGVN----TDELLISQPDNGEQALDIAEIL---VRSGAVELIVIDS 149
Cdd:TIGR02238 120 AQLPREMGGGNGKVAYIDTEGTFRpdriRAIAERFGVDpdavLDNILYARAYTSEHQMELLDYLaakFSEEPFRLLIVDS 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 150 VAALVPAAEI-EGDMGDThvglQARLmSQALRKLTAAIHRSMAAVIFINQVRAKIGGIGY---GPTEvTTGGNALKFYAT 225
Cdd:TIGR02238 200 IMALFRVDFSgRGELSER----QQKL-AQMLSRLNKISEEFNVAVFVTNQVQADPGATMTfiaDPKK-PIGGHVLAHAST 273
|
250 260
....*....|....*....|....
gi 1001958291 226 QRIEIRfKSKvmdGENRLGNLVRA 249
Cdd:TIGR02238 274 TRILLR-KGR---GEERVAKLYDS 293
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
54-331 |
5.66e-09 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 56.83 E-value: 5.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 54 FPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGG---PGVAAYIDAE----------HALDISYARRLGVNTDEL-L 119
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLAAAVAAGGPWLGRrvpPGKVLYLAAEddrgelrrrlKALGADLGLPFADLDGRLrL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 120 ISQPDNGEQALDIAEI--LVRSGAVELIVIDSVAALvpaaeIEGDMGDthvglqARLMSQALRKLTAAIHRSMAAVIFIN 197
Cdd:COG3598 90 LSLAGDLDDTDDLEALerAIEEEGPDLVVIDPLARV-----FGGDEND------AEEMRAFLNPLDRLAERTGAAVLLVH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 198 QVRaKiGGIGYGPTEVTTGGNALKFYATQRIEIrfkSKVMDGENRlgnlvRAKVVKNKLAPpfrEVEFEIIFGCGISREG 277
Cdd:COG3598 159 HTG-K-GGAGKDSGDRARGSSALRGAARSVLVL---SREKGEDLR-----VLTRAKSNYGP---EIALRWDNGGRLALEE 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1001958291 278 ELLDIGVAMNIVDKSGSWYSFNGERLGQGKENARRFLQENRDIAFEIETKLRGA 331
Cdd:COG3598 226 VAALTAGAGEVELKELVGGVARTGTDSELEEGLLEVPLAEAESAGEDAELAAKA 279
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
38-214 |
1.14e-06 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 48.80 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAevqkQNSLAGGPGvaAYIDAEHALD--ISYARRLGVNT 115
Cdd:cd01124 1 VKTGIPGLDELLG-GGIPKGSVTLLTGGPGTGKTLFGLQFLY----AGAKNGEPG--LFFTFEESPErlLRNAKSFGWDF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 116 DEL-------LISQPDNGEQALDIAEIL------VRSGAVELIVIDSVAALVPAAEiegdmgdthvglQARLMSQALRKL 182
Cdd:cd01124 74 DEMedegkliIVDAPPTEAGRFSLDELLsrilsiIKSFKAKRVVIDSLSGLRRAKE------------DQMRARRIVIAL 141
|
170 180 190
....*....|....*....|....*....|..
gi 1001958291 183 TAAIHRSMAAVIFINQVRAKIGGIGYGPTEVT 214
Cdd:cd01124 142 LNELRAAGVTTIFTSEMRSFLSSESAGGGDVS 173
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
57-198 |
4.80e-06 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 46.96 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 57 GRIIEVYGPESSGKTTLALHGVAE----VQKQNSLAGGPGVAA-YIDAEHALDISyarRLgVNTDELLISQ-PDNGEQAL 130
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARcilpSSWGGVPLGGLEAAVvFIDTDGRFDIL---RL-RSILEARIRAaIQAANSSD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 131 D-------IAEILVR----------------------------SGAVELIVIDSVAALVPAAEIEGDMGdthvGLQARLM 175
Cdd:cd19490 77 DeedveeiARECLQRlhifrchsslqllatllslenyllslsaNPELGLLLIDSISAFYWQDRFSAELA----RAAPLLQ 152
|
170 180
....*....|....*....|....*..
gi 1001958291 176 SQALRKLTAAIHRSM----AAVIFINQ 198
Cdd:cd19490 153 EAALRAILRELRRLRrrfqLVVIATKQ 179
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
52-199 |
8.33e-06 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 46.09 E-value: 8.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 52 GGFPRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAggpgvAAYIDAEHALdisYARRLGvntdELLISQPDNGEQALD 131
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANVASRSGQN-----VLYIDTKSSF---SARRLA----QILKSRAQDAEEIDK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 132 IAE-ILV--------------------------RSGAVELIVIDSVAALVpaAEIEGdmGDTHVGLQARLMSQA--LRKL 182
Cdd:cd19489 70 ALQrIRVvrvfdpyelldlleelrntlsqqqenLYSRLKLVIIDSLSALI--SPLLG--GSKHSEGHALLASLArlLKKL 145
|
170
....*....|....*..
gi 1001958291 183 TaaiHRSMAAVIFINQV 199
Cdd:cd19489 146 A---AEYQIAVLVTNLT 159
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
25-150 |
1.60e-05 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 45.99 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 25 MKLGEREQVDIPVISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALhgvaevQKQNSLAGGPGVAAYIDAEHALD 104
Cdd:cd01121 51 LPLSDVEAEEEERISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLL------QVAARLAQRGGKVLYVSGEESLS 123
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1001958291 105 -I-SYARRLGVNTDELLISQpdngEQALDIAEILVRSGAVELIVIDSV 150
Cdd:cd01121 124 qIkLRAERLGLGSDNLYLLA----ETNLEAILAEIEELKPSLVVIDSI 167
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
38-207 |
2.28e-05 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 44.93 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAevqKQNSLAGGPGVaaYIDA-EHALDI-SYARRLGVNT 115
Cdd:pfam06745 1 VKTGIPGLDEILK-GGFPEGRVVLITGGPGTGKTIFGLQFLY---NGALKYGEPGV--FVTLeEPPEDLrENARSFGWDL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 116 DELL-------------------ISQPDNGEQALDIAEILVRSGAVELIVIDSVAALvpaAEIEGDMgdthvglQARlms 176
Cdd:pfam06745 75 EKLEeegklaiidastsgigiaeVEDRFDLEELIERLREAIREIGAKRVVIDSITTL---FYLLKPA-------VAR--- 141
|
170 180 190
....*....|....*....|....*....|.
gi 1001958291 177 QALRKLTAAIHRSMAAVIFINQVRAKIGGIG 207
Cdd:pfam06745 142 EILRRLKRVLKGLGVTAIFTSEKPSGEGGIG 172
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
38-74 |
1.09e-04 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 43.09 E-value: 1.09e-04
10 20 30
....*....|....*....|....*....|....*..
gi 1001958291 38 ISTGSLALDAALGVGGFPRGRIIEVYGPESSGKTTLA 74
Cdd:cd19484 1 ISTGIPRLDAMLGGGGFFRGSSILVSGATGTGKTLLA 37
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
51-158 |
1.72e-04 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 41.98 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 51 VGGF-PRGRIIEVYGPESSGKTTLALHGVAEVQKQNSLAGGPGVAA-----YIDAE----------HAL--DISYARRLG 112
Cdd:pfam13481 26 IKGLlPAGGLGLLAGAPGTGKTTLALDLAAAVATGKPWLGGPRVPEqgkvlYVSAEgpadelrrrlRAAgaDLDLPARLL 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1001958291 113 VNT--DELLISQPDNGEQALD-----IAEILVRSGAVELIVIDSVAALVPAAE 158
Cdd:pfam13481 106 FLSlvESLPLFFLDRGGPLLDadvdaLEAALEEVEDPDLVVIDPLARALGGDE 158
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
56-190 |
1.91e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.20 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1001958291 56 RGRIIEVYGPESSGKTTLAlHGVAevqkqNSLAGGPGVAAYIDAEHALDISYARRLGVNTDELLISqpDNGEQALDIAEI 135
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLA-RALA-----RELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALA 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1001958291 136 LVRSGAVELIVIDSVAALVPAAEIEGDMGDTHVGLQARLMSQALRKLTAAIHRSM 190
Cdd:smart00382 73 LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
38-80 |
3.69e-04 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 41.57 E-value: 3.69e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAE 80
Cdd:cd19488 1 ISTGIPGLDDILR-GGLPPRRLYLVEGAPGTGKTTLALQFLLE 42
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
38-80 |
1.02e-03 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 41.02 E-value: 1.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1001958291 38 ISTGSLALDAALGvGGFPRGRIIEVYGPESSGKTTLALHGVAE 80
Cdd:PRK09302 255 ISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEA 296
|
|
| |
