|
Name |
Accession |
Description |
Interval |
E-value |
| COLFI |
pfam01410 |
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1505-1734 |
3.56e-119 |
|
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 460199 Cd Length: 233 Bit Score: 374.76 E-value: 3.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1505 GMEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAgGETCIFPDKK 1584
Cdd:pfam01410 1 RDEEVMATLKSLSQQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTRDAIKVFCNFET-GETCIYPTKA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1585 SNGvRISSWPKEVPGSWFSEFKRGKI-LSY-VDAEGNSINMVQMTFLKLLTASARQNLTYSCHQSVAWHDATTDSYDRAL 1662
Cdd:pfam01410 80 SIP-RKNWWTKESKHVWFGEFMNGGSqFSYgVDGVGPSVAAVQLTFLRLLSTEASQNITYHCKNSVAYMDQATGNLKKAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1663 HFLGSNDEEISYD--NNPYIKALSDGCAVRKGY-GKTVLEINTPKIDQVPIVDVKFTDFGDPNQKFGFEVGPVCF 1734
Cdd:pfam01410 159 LLQGSNDEEIRAEgnSRFTYTVLEDGCTKRTGQwGKTVIEYRTQKVSRLPIVDIAPMDIGGADQEFGVEVGPVCF 233
|
|
| COLFI |
smart00038 |
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1506-1735 |
2.58e-102 |
|
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 197483 Cd Length: 232 Bit Score: 327.12 E-value: 2.58e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1506 MEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAgGETCIFPDKKS 1585
Cdd:smart00038 1 DEEVFASLKSLNNQIEQLKSPTGSRKNPARTCKDLKLCHPEWKSGEYWVDPNQGCIRDAIKVFCNFET-GETCVSPSPSS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1586 NGVRISSWPKeVPGSWFSEFKR-GKILSYVDAEGNSINMVQMTFLKLLTASARQNLTYSCHQSVAWHDATTDSYDRALHF 1664
Cdd:smart00038 80 IPRKTWYSGK-SKHVWFGETMNgGFKFSYGDSEGPPVGVVQLTFLRLLSTEAHQNITYHCKNSVAYMDEATGNLKKALRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 139948691 1665 LGSNDEEISYDNN--PYIKALSDGCAVRKGY-GKTVLEINTPKIDQVPIVDVKFTDFGDPNQKFGFEVGPVCFL 1735
Cdd:smart00038 159 RGSNDVELSAEGNskFTYEVLEDGCQKRTGKwGKTVIEYRTKKTERLPIVDIAPSDIGGPDQEFGVEIGPVCFS 232
|
|
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
42-232 |
5.08e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 189.88 E-value: 5.08e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 42 PVDVLKVLEFPTVPEGVEKTSGFCTnrrasqPDAAYKISKNAQLSAPTKQLFPDGvFPEDFSILTTIKPKAGIQSFLLSI 121
Cdd:smart00210 1 GQDLLQVFDLPSLSFAIRQVVGPEP------GSPAYRLGDPALVPQPTRDLFPSG-LPEDFSLLTTFRQTPKSRGVLFAI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 122 YNEKGVQQLGVEV-GRSPVFLYEDQeGKPAPEDYPLFRALNLADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGRSDHAS 200
Cdd:smart00210 74 YDAQNVRQFGLEVdGRANTLLLRYQ-GVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPP 152
|
170 180 190
....*....|....*....|....*....|..
gi 139948691 201 IDTKGITVFGTRILDEESFEGDIQQLLIVADP 232
Cdd:smart00210 153 IDTDGIEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
645-843 |
2.22e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 120.40 E-value: 2.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 645 KGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEdgfPGFKGDMG 724
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP---QGPRGETG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 725 LKGDRGELGLAGPRGEDGPEGPKGRAGPNG--ESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRG 802
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 139948691 803 VAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGNDGPP 843
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQP 322
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
544-834 |
1.89e-27 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 117.70 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 544 GHRGETGPAgppgptgedGPRGEDGEIGPRGLAGESGPRGLLGPRGPPGPPGQPGIAGVDGPQGPKGnmgpqgepgppgq 623
Cdd:NF038329 117 GEKGEPGPA---------GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG------------- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 624 qgipggqglpgpqgpigppgEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGvrg 703
Cdd:NF038329 175 --------------------PAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG--- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 704 lkggkgekgedgfPGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKlgvpglPGYPGRQGPK 783
Cdd:NF038329 232 -------------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP------VGPAGKDGQN 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 139948691 784 GSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPK 834
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
490-802 |
1.05e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 115.39 E-value: 1.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 490 GPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRgetgpagppgptgedGPRGEDGE 569
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQ---------------GPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 570 IGPRGLAGEsgprgllgprgppgppgqpgiagvDGPQGPKGnmgpqgepgppgqqgipggqglpgpqgpigppgEKGPQG 649
Cdd:NF038329 182 AGAKGPAGE------------------------KGPQGPRG---------------------------------ETGPAG 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 650 RSGLPGLPGADGPPGHPGKEGPPGEKGalgqPGPQGPIGYPGPRGVKGADGVRglkggkgekgedgfpGFKGDMGLKGDR 729
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAG----DGQQGPDGDPGPTGEDGPQGPD---------------GPAGKDGPRGDR 265
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 139948691 730 GELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRG 802
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
673-835 |
2.18e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 114.62 E-value: 2.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 673 GEKGALGQPGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDM------GLKGDRGELGLAGPRGEDGPEGP 746
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQgeagpqGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 747 KGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQG--PKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGA 824
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170
....*....|.
gi 139948691 825 RGPTGKPGPKG 835
Cdd:NF038329 277 DGERGPVGPAG 287
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
483-751 |
1.83e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.54 E-value: 1.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 483 KGESGDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGEtgpagppgptgeDG 562
Cdd:NF038329 119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA------------KG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 563 PRGEDGEIGPRGLAGEsgprgllgprgppgppgqpgiAGVDGPQGPKGNmGPQGEPGPPGQQGIPGGQGLPGPQGPIGPP 642
Cdd:NF038329 187 PAGEKGPQGPRGETGP---------------------AGEQGPAGPAGP-DGEAGPAGEDGPAGPAGDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 643 GEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRglkggkgekgedgfpGFKGD 722
Cdd:NF038329 245 GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD---------------GQNGK 309
|
250 260
....*....|....*....|....*....
gi 139948691 723 MGLKGDRGELGLAGPRGEDGPEGPKGRAG 751
Cdd:NF038329 310 DGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
722-976 |
2.70e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.99 E-value: 2.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 722 DMGLKGDRGELGLAGPRGEDGPEGPKGragPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGR 801
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRG---DRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 802 GVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPkgppgppgkdglpghpGQ 881
Cdd:NF038329 189 GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQ----------------GP 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 882 RGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpgppgppgeqglPGAGGKEGAKGDPGPQGSPGKDGPPGLRGFPG 961
Cdd:NF038329 253 DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP---------------AGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
250
....*....|....*
gi 139948691 962 ERGLPGVTGPPGLKG 976
Cdd:NF038329 318 KDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
400-686 |
1.06e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 97.28 E-value: 1.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 400 GDRGPPGRAGLPGADGLPGPPGTmlmlpfrfggDGEKGPVVSAQEAQAQAilsqaRLAMRGPPGPMGLTGRSGPVGLPGP 479
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGD----------RGETGPAGPAGPPGPQG-----ERGEKGPAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 480 PGLKGESGDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDrGFDGLPGLPGEKGHRGETGPAGPPGPTG 559
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 560 EDGPRGEDGEIGPRGLAGESGPRGLlgprgppgppgqpgiAGVDGPQGPKGnmgpqgepgppgqqgipggqglpgpqgpi 639
Cdd:NF038329 261 PRGDRGEAGPDGPDGKDGERGPVGP---------------AGKDGQNGKDG----------------------------- 296
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 139948691 640 gPPGEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGP 686
Cdd:NF038329 297 -LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
941-1144 |
8.09e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.51 E-value: 8.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 941 DPGPQGSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSAGPIGLPGRTGPQGPPGPAGEK 1020
Cdd:NF038329 121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1021 GAPGERGPLGPAGRDGVQGPvGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLQGPIGAPGPAGADGE 1100
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGP-AGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 139948691 1101 PGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENG 1144
Cdd:NF038329 280 RGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPG 323
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
760-1039 |
3.31e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.58 E-value: 3.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 760 GSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTagn 839
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 840 dgppgppgergpqgpqgpvgfpgpkgppgppgkdglpghPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpg 919
Cdd:NF038329 194 ---------------------------------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP----- 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 920 ppgppgeqglpGAGGKEGAKGDPGPQGSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSA 999
Cdd:NF038329 230 -----------AGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP 298
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 139948691 1000 GPIGLPGRTGPQGPPGPAGEKGAPGERGPLGPAGRDGVQG 1039
Cdd:NF038329 299 GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
880-1114 |
7.41e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 85.34 E-value: 7.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 880 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAggkegakgdPGPQGSPGKDGPPGLRGF 959
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 960 PGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSAGPIGlpgrtgpQGPPGPAGEKGAPGERGPLGPAGRDGVQG 1039
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------DGQQGPDGDPGPTGEDGPQGPDGPAGKDG 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1040 PVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLQGPIGAPGPAGADGEPGPRGQQGMFGQKG 1114
Cdd:NF038329 261 PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
788-1102 |
4.46e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.95 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 788 FPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAgndgppgppgergpqgpqgpvgfpgpkgpp 867
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPA------------------------------ 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 868 gppgkdglpghpGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpgppgppgeqglpgaggkegakgdPGPQGS 947
Cdd:NF038329 165 ------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE---------------------------TGPAGE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 948 PGKDGPPGLRGFPGERGLPGVTGPPGlkgaegpqgppgpvgsPGERGAAGSAGPIGLPGRTGPQGPPGPAGEKGAPGERG 1027
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAG----------------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG 269
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1028 PLGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLqgpigaPGPAGADGEPG 1102
Cdd:NF038329 270 PDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGL------PGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1300-1459 |
3.53e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.87 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1300 GAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGS 1379
Cdd:NF038329 147 GPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1380 KGE--KGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKGDNGISGASGPIGPPGPPGLPGPQGPKGSKGSTGPAGQKGD 1457
Cdd:NF038329 227 AGPagDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQ 306
|
..
gi 139948691 1458 TG 1459
Cdd:NF038329 307 NG 308
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1261-1421 |
1.15e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1261 GGPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAHGAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGL 1340
Cdd:NF038329 138 GDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1341 RGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGlKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKGDNG 1420
Cdd:NF038329 218 AGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGP-QGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG 296
|
.
gi 139948691 1421 I 1421
Cdd:NF038329 297 L 297
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1186-1417 |
4.28e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 70.32 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1186 GEQGEAGNPGPPGEPGPGGPKGERGEKGEAGPPGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPGPPGEPGVAGIDGGPGE 1265
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1266 KGEDGESGQPGPPGPSGEAGPPGPPgkrgppgahGAEGRQGEKGaKGEAGLEGPPGKTGPVGPQGPSGKPGPEGLRGIPG 1345
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPA---------GEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139948691 1346 PVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKG 1417
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1021-1402 |
4.31e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1021 GAPGERGPLGPAGRDGVQGPvglpgpagpqgppgeDGDKGEVGEPGQKGSKADKGEQGPpgppglqgpigaPGPAGADGE 1100
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP---------------RGDRGETGPAGPAGPPGPQGERGE------------KGPAGPQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1101 PGPRGQQGMFGQKGDEgsrgfpgppgpiglqglpGPPGEKGENGDVGPMGPPGPPGPRGPQGPPGADGPQGPPGGIGGMG 1180
Cdd:NF038329 170 AGPQGPAGKDGEAGAK------------------GPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1181 avgeKGEQGEagnpgppgepgpggpkgergekgeagppgaagpagpkgppgdDGPKGNpgpvgfpgdpgppgepgvagiD 1260
Cdd:NF038329 232 ----DGQQGP------------------------------------------DGDPGP---------------------T 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1261 GGPGEKGEDgesgqpgppgpsgeagppgppgkrgppgahGAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGL 1340
Cdd:NF038329 245 GEDGPQGPD------------------------------GPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGK 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139948691 1341 RGIPGPVGEQGlpgapgqdgppgpmgppgLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKG 1402
Cdd:NF038329 295 DGLPGKDGKDG------------------QNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
487-799 |
3.50e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 58.12 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 487 GDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGETGPAGPPGPTGEDGPRGE 566
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 567 DGEIGPRGLAGESGPRGLLGPRGPPGPPGQPGIAGVDGPQGPKGNMGPQGEPGPPGQQGIPGGQGLPGPQGPIGPPGEKG 646
Cdd:COG5164 87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGSTT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 647 PQGRSGLPGLPGADGP--PGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGAdgvrglkggkgekgedgfpgfkgdmg 724
Cdd:COG5164 167 PPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP-------------------------- 220
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 725 lKGDRGelGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGvPGLPGYPGRQGPKGSTGFPGFPGANGEKG 799
Cdd:COG5164 221 -PDDRG--GKTGPKDQRPKTNPIERRGPERPEAAALPAELTALEA-ENRAANPEPATKTIPETTTVKDLATVLGK 291
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
646-700 |
5.31e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 47.87 E-value: 5.31e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 646 GPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADG 700
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1316-1459 |
5.54e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.14 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1316 LEGPPGKTGPVGPQGPSGKPGPEGLRGipgpvgeqglpgapgqdgppgpmgppglpgLKGDPGSKGEKGHPGLIGLIGPP 1395
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRG------------------------------ETGPAGPAGPPGPQGERGEKGPA 164
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 139948691 1396 GEQGEKGDRGLPGPQGAAGSKGDNGisgasgpigppgppgLPGPQGPKGSKGSTGPAGQKGDTG 1459
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAG---------------EKGPQGPRGETGPAGEQGPAGPAG 213
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
733-978 |
3.01e-06 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 51.95 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 733 GLAGPrGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGvagKAGPRGQ 812
Cdd:COG5164 2 GLYGP-GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQG---ATGPAQN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 813 RGPTGPRGARGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 892
Cdd:COG5164 78 QGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 893 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGakgdPGPQGSPGKDGPPGLRGFPGERGlpGVTGPP 972
Cdd:COG5164 158 PPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPR----QGPDGPVKKDDKNGKGNPPDDRG--GKTGPK 231
|
....*.
gi 139948691 973 GLKGAE 978
Cdd:COG5164 232 DQRPKT 237
|
|
| LamG |
cd00110 |
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ... |
162-228 |
5.09e-06 |
|
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Pssm-ID: 238058 [Multi-domain] Cd Length: 151 Bit Score: 48.18 E-value: 5.09e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 162 LADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGRSdHASIDTKGITVFG--------TRILDEESFEGDIQQLLI 228
Cdd:cd00110 77 LNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGG-SALLNLDGPLYLGglpedlksPGLPVSPGFVGCIRDLKV 150
|
|
| GGGWT_bact |
NF040941 |
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, ... |
1536-1575 |
3.21e-05 |
|
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, describes a conserved domain found in eukaryotic proteins such as fibrinogen beta and gamma chains, fincolin, and angiopoietin. This model describes a small homology domain, about 46 amino acids long, found in the PF00147 homology region of those proteins but also as a much shorter homology domain in bacterial proteins that may lack homology to those proteins, or to each other, outside this region. The signature motif, at the C-terminus of this domain, is YCDxTTDGGGWxLV.
Pssm-ID: 468872 [Multi-domain] Cd Length: 46 Bit Score: 42.55 E-value: 3.21e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 139948691 1536 SCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAGG 1575
Cdd:NF040941 1 SCWEILQAGPSAPSGVYWIDPDGMGGLAPFQVYCDMTTDG 40
|
|
| Laminin_G_2 |
pfam02210 |
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ... |
161-228 |
9.15e-04 |
|
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.
Pssm-ID: 460494 [Multi-domain] Cd Length: 126 Bit Score: 40.87 E-value: 9.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 139948691 161 NLADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGrSDHASIDTKGITVFG--------TRILDEESFEGDIQQLLI 228
Cdd:pfam02210 49 NLNDGQWHSVRVERNGNTLTLSVDGQTVVSSLPP-GESLLLNLNGPLYLGglppllllPALPVRAGFVGCIRDVRV 123
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
644-832 |
3.77e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.88 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 644 EKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPigypgprgvkgadgvrglkggkgekgedgfpgfKGDM 723
Cdd:PHA03169 109 GSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAP---------------------------------PESH 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 724 GLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGyPGRQGPKGSTGFPGFPGANGEKGGRGV 803
Cdd:PHA03169 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP-PDEPGEPQSPTPQQAPSPNTQQAVEHE 234
|
170 180 190
....*....|....*....|....*....|...
gi 139948691 804 AGKAGPR----GQRGPTGPRGARGARGPTGKPG 832
Cdd:PHA03169 235 DEPTEPEregpPFPGHRSHSYTVVGWKPSTRPG 267
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
337-543 |
5.12e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.43 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 337 PPTPRQAILGLGGGAALGQKGEKGEPAviEPGMLIEGPSGPpgpaglpgppglQGPPGLAGDPGDRGPPGRAGLPGADGL 416
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAG--PAGDGQQGPDGD------------PGPTGEDGPQGPDGPAGKDGPRGDRGE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 417 PGPPGTmlmlpfrfggDGEKGPvvsaqeaqaqailsqarlamRGPPGPMGltgrsgpvglpgppgLKGESGDHGPQGPRG 496
Cdd:NF038329 268 AGPDGP----------DGKDGE--------------------RGPVGPAG---------------KDGQNGKDGLPGKDG 302
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 139948691 497 IQGPPGQIGKPGKRGRAGADGARGMPGESGSkgdrgfDGLPGLPGEK 543
Cdd:NF038329 303 KDGQNGKDGLPGKDGKDGQPGKDGLPGKDGK------DGQPGKPAPK 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COLFI |
pfam01410 |
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1505-1734 |
3.56e-119 |
|
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 460199 Cd Length: 233 Bit Score: 374.76 E-value: 3.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1505 GMEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAgGETCIFPDKK 1584
Cdd:pfam01410 1 RDEEVMATLKSLSQQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTRDAIKVFCNFET-GETCIYPTKA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1585 SNGvRISSWPKEVPGSWFSEFKRGKI-LSY-VDAEGNSINMVQMTFLKLLTASARQNLTYSCHQSVAWHDATTDSYDRAL 1662
Cdd:pfam01410 80 SIP-RKNWWTKESKHVWFGEFMNGGSqFSYgVDGVGPSVAAVQLTFLRLLSTEASQNITYHCKNSVAYMDQATGNLKKAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1663 HFLGSNDEEISYD--NNPYIKALSDGCAVRKGY-GKTVLEINTPKIDQVPIVDVKFTDFGDPNQKFGFEVGPVCF 1734
Cdd:pfam01410 159 LLQGSNDEEIRAEgnSRFTYTVLEDGCTKRTGQwGKTVIEYRTQKVSRLPIVDIAPMDIGGADQEFGVEVGPVCF 233
|
|
| COLFI |
smart00038 |
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1506-1735 |
2.58e-102 |
|
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 197483 Cd Length: 232 Bit Score: 327.12 E-value: 2.58e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1506 MEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAgGETCIFPDKKS 1585
Cdd:smart00038 1 DEEVFASLKSLNNQIEQLKSPTGSRKNPARTCKDLKLCHPEWKSGEYWVDPNQGCIRDAIKVFCNFET-GETCVSPSPSS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1586 NGVRISSWPKeVPGSWFSEFKR-GKILSYVDAEGNSINMVQMTFLKLLTASARQNLTYSCHQSVAWHDATTDSYDRALHF 1664
Cdd:smart00038 80 IPRKTWYSGK-SKHVWFGETMNgGFKFSYGDSEGPPVGVVQLTFLRLLSTEAHQNITYHCKNSVAYMDEATGNLKKALRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 139948691 1665 LGSNDEEISYDNN--PYIKALSDGCAVRKGY-GKTVLEINTPKIDQVPIVDVKFTDFGDPNQKFGFEVGPVCFL 1735
Cdd:smart00038 159 RGSNDVELSAEGNskFTYEVLEDGCQKRTGKwGKTVIEYRTKKTERLPIVDIAPSDIGGPDQEFGVEIGPVCFS 232
|
|
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
42-232 |
5.08e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 189.88 E-value: 5.08e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 42 PVDVLKVLEFPTVPEGVEKTSGFCTnrrasqPDAAYKISKNAQLSAPTKQLFPDGvFPEDFSILTTIKPKAGIQSFLLSI 121
Cdd:smart00210 1 GQDLLQVFDLPSLSFAIRQVVGPEP------GSPAYRLGDPALVPQPTRDLFPSG-LPEDFSLLTTFRQTPKSRGVLFAI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 122 YNEKGVQQLGVEV-GRSPVFLYEDQeGKPAPEDYPLFRALNLADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGRSDHAS 200
Cdd:smart00210 74 YDAQNVRQFGLEVdGRANTLLLRYQ-GVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPP 152
|
170 180 190
....*....|....*....|....*....|..
gi 139948691 201 IDTKGITVFGTRILDEESFEGDIQQLLIVADP 232
Cdd:smart00210 153 IDTDGIEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
645-843 |
2.22e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 120.40 E-value: 2.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 645 KGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEdgfPGFKGDMG 724
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP---QGPRGETG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 725 LKGDRGELGLAGPRGEDGPEGPKGRAGPNG--ESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRG 802
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 139948691 803 VAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGNDGPP 843
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQP 322
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
544-834 |
1.89e-27 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 117.70 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 544 GHRGETGPAgppgptgedGPRGEDGEIGPRGLAGESGPRGLLGPRGPPGPPGQPGIAGVDGPQGPKGnmgpqgepgppgq 623
Cdd:NF038329 117 GEKGEPGPA---------GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG------------- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 624 qgipggqglpgpqgpigppgEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGvrg 703
Cdd:NF038329 175 --------------------PAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG--- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 704 lkggkgekgedgfPGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKlgvpglPGYPGRQGPK 783
Cdd:NF038329 232 -------------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP------VGPAGKDGQN 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 139948691 784 GSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPK 834
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
490-802 |
1.05e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 115.39 E-value: 1.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 490 GPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRgetgpagppgptgedGPRGEDGE 569
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQ---------------GPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 570 IGPRGLAGEsgprgllgprgppgppgqpgiagvDGPQGPKGnmgpqgepgppgqqgipggqglpgpqgpigppgEKGPQG 649
Cdd:NF038329 182 AGAKGPAGE------------------------KGPQGPRG---------------------------------ETGPAG 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 650 RSGLPGLPGADGPPGHPGKEGPPGEKGalgqPGPQGPIGYPGPRGVKGADGVRglkggkgekgedgfpGFKGDMGLKGDR 729
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAG----DGQQGPDGDPGPTGEDGPQGPD---------------GPAGKDGPRGDR 265
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 139948691 730 GELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRG 802
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
673-835 |
2.18e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 114.62 E-value: 2.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 673 GEKGALGQPGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDM------GLKGDRGELGLAGPRGEDGPEGP 746
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQgeagpqGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 747 KGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQG--PKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGA 824
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170
....*....|.
gi 139948691 825 RGPTGKPGPKG 835
Cdd:NF038329 277 DGERGPVGPAG 287
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
483-751 |
1.83e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.54 E-value: 1.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 483 KGESGDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGEtgpagppgptgeDG 562
Cdd:NF038329 119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA------------KG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 563 PRGEDGEIGPRGLAGEsgprgllgprgppgppgqpgiAGVDGPQGPKGNmGPQGEPGPPGQQGIPGGQGLPGPQGPIGPP 642
Cdd:NF038329 187 PAGEKGPQGPRGETGP---------------------AGEQGPAGPAGP-DGEAGPAGEDGPAGPAGDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 643 GEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRglkggkgekgedgfpGFKGD 722
Cdd:NF038329 245 GEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD---------------GQNGK 309
|
250 260
....*....|....*....|....*....
gi 139948691 723 MGLKGDRGELGLAGPRGEDGPEGPKGRAG 751
Cdd:NF038329 310 DGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
722-976 |
2.70e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.99 E-value: 2.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 722 DMGLKGDRGELGLAGPRGEDGPEGPKGragPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGR 801
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRG---DRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 802 GVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPkgppgppgkdglpghpGQ 881
Cdd:NF038329 189 GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQ----------------GP 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 882 RGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpgppgppgeqglPGAGGKEGAKGDPGPQGSPGKDGPPGLRGFPG 961
Cdd:NF038329 253 DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP---------------AGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
250
....*....|....*
gi 139948691 962 ERGLPGVTGPPGLKG 976
Cdd:NF038329 318 KDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
400-686 |
1.06e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 97.28 E-value: 1.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 400 GDRGPPGRAGLPGADGLPGPPGTmlmlpfrfggDGEKGPVVSAQEAQAQAilsqaRLAMRGPPGPMGLTGRSGPVGLPGP 479
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGD----------RGETGPAGPAGPPGPQG-----ERGEKGPAGPQGEAGPQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 480 PGLKGESGDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDrGFDGLPGLPGEKGHRGETGPAGPPGPTG 559
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 560 EDGPRGEDGEIGPRGLAGESGPRGLlgprgppgppgqpgiAGVDGPQGPKGnmgpqgepgppgqqgipggqglpgpqgpi 639
Cdd:NF038329 261 PRGDRGEAGPDGPDGKDGERGPVGP---------------AGKDGQNGKDG----------------------------- 296
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 139948691 640 gPPGEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGP 686
Cdd:NF038329 297 -LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
941-1144 |
8.09e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.51 E-value: 8.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 941 DPGPQGSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSAGPIGLPGRTGPQGPPGPAGEK 1020
Cdd:NF038329 121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1021 GAPGERGPLGPAGRDGVQGPvGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLQGPIGAPGPAGADGE 1100
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGP-AGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 139948691 1101 PGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENG 1144
Cdd:NF038329 280 RGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPG 323
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
760-1039 |
3.31e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.58 E-value: 3.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 760 GSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTagn 839
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGP--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 840 dgppgppgergpqgpqgpvgfpgpkgppgppgkdglpghPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpg 919
Cdd:NF038329 194 ---------------------------------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP----- 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 920 ppgppgeqglpGAGGKEGAKGDPGPQGSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSA 999
Cdd:NF038329 230 -----------AGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLP 298
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 139948691 1000 GPIGLPGRTGPQGPPGPAGEKGAPGERGPLGPAGRDGVQG 1039
Cdd:NF038329 299 GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
880-1114 |
7.41e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 85.34 E-value: 7.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 880 GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAggkegakgdPGPQGSPGKDGPPGLRGF 959
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 960 PGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSAGPIGlpgrtgpQGPPGPAGEKGAPGERGPLGPAGRDGVQG 1039
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------DGQQGPDGDPGPTGEDGPQGPDGPAGKDG 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1040 PVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLQGPIGAPGPAGADGEPGPRGQQGMFGQKG 1114
Cdd:NF038329 261 PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
788-1102 |
4.46e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.95 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 788 FPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAgndgppgppgergpqgpqgpvgfpgpkgpp 867
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPA------------------------------ 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 868 gppgkdglpghpGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGErghpgppgppgeqglpgaggkegakgdPGPQGS 947
Cdd:NF038329 165 ------------GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE---------------------------TGPAGE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 948 PGKDGPPGLRGFPGERGLPGVTGPPGlkgaegpqgppgpvgsPGERGAAGSAGPIGLPGRTGPQGPPGPAGEKGAPGERG 1027
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAG----------------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG 269
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 1028 PLGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPPGLqgpigaPGPAGADGEPG 1102
Cdd:NF038329 270 PDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGL------PGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1300-1459 |
3.53e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 76.87 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1300 GAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGS 1379
Cdd:NF038329 147 GPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1380 KGE--KGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKGDNGISGASGPIGPPGPPGLPGPQGPKGSKGSTGPAGQKGD 1457
Cdd:NF038329 227 AGPagDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQ 306
|
..
gi 139948691 1458 TG 1459
Cdd:NF038329 307 NG 308
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1261-1421 |
1.15e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1261 GGPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAHGAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGL 1340
Cdd:NF038329 138 GDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1341 RGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGlKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKGDNG 1420
Cdd:NF038329 218 AGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGP-QGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG 296
|
.
gi 139948691 1421 I 1421
Cdd:NF038329 297 L 297
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1186-1417 |
4.28e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 70.32 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1186 GEQGEAGNPGPPGEPGPGGPKGERGEKGEAGPPGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPGPPGEPGVAGIDGGPGE 1265
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1266 KGEDGESGQPGPPGPSGEAGPPGPPgkrgppgahGAEGRQGEKGaKGEAGLEGPPGKTGPVGPQGPSGKPGPEGLRGIPG 1345
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPA---------GEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139948691 1346 PVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKG 1417
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1021-1402 |
4.31e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1021 GAPGERGPLGPAGRDGVQGPvglpgpagpqgppgeDGDKGEVGEPGQKGSKADKGEQGPpgppglqgpigaPGPAGADGE 1100
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP---------------RGDRGETGPAGPAGPPGPQGERGE------------KGPAGPQGE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1101 PGPRGQQGMFGQKGDEgsrgfpgppgpiglqglpGPPGEKGENGDVGPMGPPGPPGPRGPQGPPGADGPQGPPGGIGGMG 1180
Cdd:NF038329 170 AGPQGPAGKDGEAGAK------------------GPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1181 avgeKGEQGEagnpgppgepgpggpkgergekgeagppgaagpagpkgppgdDGPKGNpgpvgfpgdpgppgepgvagiD 1260
Cdd:NF038329 232 ----DGQQGP------------------------------------------DGDPGP---------------------T 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1261 GGPGEKGEDgesgqpgppgpsgeagppgppgkrgppgahGAEGRQGEKGAKGEAGLEGPPGKTGPVGPQGPSGKPGPEGL 1340
Cdd:NF038329 245 GEDGPQGPD------------------------------GPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGK 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139948691 1341 RGIPGPVGEQGlpgapgqdgppgpmgppgLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKG 1402
Cdd:NF038329 295 DGLPGKDGKDG------------------QNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
487-799 |
3.50e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 58.12 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 487 GDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGETGPAGPPGPTGEDGPRGE 566
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 567 DGEIGPRGLAGESGPRGLLGPRGPPGPPGQPGIAGVDGPQGPKGNMGPQGEPGPPGQQGIPGGQGLPGPQGPIGPPGEKG 646
Cdd:COG5164 87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGSTT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 647 PQGRSGLPGLPGADGP--PGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGAdgvrglkggkgekgedgfpgfkgdmg 724
Cdd:COG5164 167 PPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP-------------------------- 220
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 725 lKGDRGelGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGvPGLPGYPGRQGPKGSTGFPGFPGANGEKG 799
Cdd:COG5164 221 -PDDRG--GKTGPKDQRPKTNPIERRGPERPEAAALPAELTALEA-ENRAANPEPATKTIPETTTVKDLATVLGK 291
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
646-700 |
5.31e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 47.87 E-value: 5.31e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 646 GPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADG 700
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1316-1459 |
5.54e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.14 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 1316 LEGPPGKTGPVGPQGPSGKPGPEGLRGipgpvgeqglpgapgqdgppgpmgppglpgLKGDPGSKGEKGHPGLIGLIGPP 1395
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRG------------------------------ETGPAGPAGPPGPQGERGEKGPA 164
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 139948691 1396 GEQGEKGDRGLPGPQGAAGSKGDNGisgasgpigppgppgLPGPQGPKGSKGSTGPAGQKGDTG 1459
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAG---------------EKGPQGPRGETGPAGEQGPAGPAG 213
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
733-978 |
3.01e-06 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 51.95 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 733 GLAGPrGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGvagKAGPRGQ 812
Cdd:COG5164 2 GLYGP-GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQG---ATGPAQN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 813 RGPTGPRGARGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 892
Cdd:COG5164 78 QGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 893 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGakgdPGPQGSPGKDGPPGLRGFPGERGlpGVTGPP 972
Cdd:COG5164 158 PPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPR----QGPDGPVKKDDKNGKGNPPDDRG--GKTGPK 231
|
....*.
gi 139948691 973 GLKGAE 978
Cdd:COG5164 232 DQRPKT 237
|
|
| LamG |
cd00110 |
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ... |
162-228 |
5.09e-06 |
|
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Pssm-ID: 238058 [Multi-domain] Cd Length: 151 Bit Score: 48.18 E-value: 5.09e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 162 LADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGRSdHASIDTKGITVFG--------TRILDEESFEGDIQQLLI 228
Cdd:cd00110 77 LNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGG-SALLNLDGPLYLGglpedlksPGLPVSPGFVGCIRDLKV 150
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
733-787 |
1.37e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.02 E-value: 1.37e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 733 GLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTG 787
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| LamG |
smart00282 |
Laminin G domain; |
102-228 |
1.95e-05 |
|
Laminin G domain;
Pssm-ID: 214598 [Multi-domain] Cd Length: 132 Bit Score: 45.79 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 102 FSILTTiKPKAgiqsFLLSIYNEKGVQQLGVE-VGRSPVFLYEDQEGKPAPEdyplFRALNLADGKWHRVGISVEKKTVT 180
Cdd:smart00282 4 FSFRTT-SPNG----LLLYAGSKGGGDYLALElRDGRLVLRYDLGSGPARLT----SDPTPLNDGQWHRVAVERNGRSVT 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 139948691 181 IVVDCKKKLTKPLgRSDHASIDTKGITVFG--------TRILDEESFEGDIQQLLI 228
Cdd:smart00282 75 LSVDGGNRVSGES-PGGLTILNLDGPLYLGglpedlklPPLPVTPGFRGCIRNLKV 129
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
745-799 |
2.15e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 43.64 E-value: 2.15e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 745 GPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKG 799
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
644-693 |
2.54e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 43.25 E-value: 2.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 139948691 644 EKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPR 693
Cdd:pfam01391 8 PPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| GGGWT_bact |
NF040941 |
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, ... |
1536-1575 |
3.21e-05 |
|
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, describes a conserved domain found in eukaryotic proteins such as fibrinogen beta and gamma chains, fincolin, and angiopoietin. This model describes a small homology domain, about 46 amino acids long, found in the PF00147 homology region of those proteins but also as a much shorter homology domain in bacterial proteins that may lack homology to those proteins, or to each other, outside this region. The signature motif, at the C-terminus of this domain, is YCDxTTDGGGWxLV.
Pssm-ID: 468872 [Multi-domain] Cd Length: 46 Bit Score: 42.55 E-value: 3.21e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 139948691 1536 SCKDLQLAHPEFPDGEYYIDPNQGCSGDSFKVYCNFTAGG 1575
Cdd:NF040941 1 SCWEILQAGPSAPSGVYWIDPDGMGGLAPFQVYCDMTTDG 40
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
757-813 |
6.39e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 6.39e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 139948691 757 GPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKAGPRGQR 813
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
717-978 |
1.23e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 46.56 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 717 PGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 796
Cdd:COG5164 12 SDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQNQGGTR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 797 EKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP 876
Cdd:COG5164 92 PAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGSTTPPGPG 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 877 ghpGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPigerghPGPPGPPGEQGLPGAGGKEGAKGDPGPQGSPGKDGPPGL 956
Cdd:COG5164 172 ---GSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQ------GPDGPVKKDDKNGKGNPPDDRGGKTGPKDQRPKTNPIER 242
|
250 260
....*....|....*....|..
gi 139948691 957 RGFPGERGLPGVTGPPGLKGAE 978
Cdd:COG5164 243 RGPERPEAAALPAELTALEAEN 264
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
787-837 |
1.66e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.94 E-value: 1.66e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 139948691 787 GFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTA 837
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
724-778 |
1.98e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.94 E-value: 1.98e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 724 GLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPG 778
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
644-694 |
2.14e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 2.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 139948691 644 EKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRG 694
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
751-807 |
4.14e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 139948691 751 GPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKA 807
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
727-782 |
4.43e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.43e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 139948691 727 GDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGP 782
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
748-802 |
4.84e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.84e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 139948691 748 GRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRG 802
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
754-810 |
5.14e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 5.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 139948691 754 GESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKAGPR 810
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Laminin_G_2 |
pfam02210 |
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ... |
161-228 |
9.15e-04 |
|
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.
Pssm-ID: 460494 [Multi-domain] Cd Length: 126 Bit Score: 40.87 E-value: 9.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 139948691 161 NLADGKWHRVGISVEKKTVTIVVDCKKKLTKPLGrSDHASIDTKGITVFG--------TRILDEESFEGDIQQLLI 228
Cdd:pfam02210 49 NLNDGQWHSVRVERNGNTLTLSVDGQTVVSSLPP-GESLLLNLNGPLYLGglppllllPALPVRAGFVGCIRDVRV 123
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
717-764 |
1.15e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 139948691 717 PGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGE 764
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
717-766 |
2.96e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 2.96e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 139948691 717 PGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKG 766
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPG 52
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
644-832 |
3.77e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.88 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 644 EKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPigypgprgvkgadgvrglkggkgekgedgfpgfKGDM 723
Cdd:PHA03169 109 GSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAP---------------------------------PESH 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 724 GLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGyPGRQGPKGSTGFPGFPGANGEKGGRGV 803
Cdd:PHA03169 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP-PDEPGEPQSPTPQQAPSPNTQQAVEHE 234
|
170 180 190
....*....|....*....|....*....|...
gi 139948691 804 AGKAGPR----GQRGPTGPRGARGARGPTGKPG 832
Cdd:PHA03169 235 DEPTEPEregpPFPGHRSHSYTVVGWKPSTRPG 267
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
337-543 |
5.12e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 41.43 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 337 PPTPRQAILGLGGGAALGQKGEKGEPAviEPGMLIEGPSGPpgpaglpgppglQGPPGLAGDPGDRGPPGRAGLPGADGL 416
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAG--PAGDGQQGPDGD------------PGPTGEDGPQGPDGPAGKDGPRGDRGE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 417 PGPPGTmlmlpfrfggDGEKGPvvsaqeaqaqailsqarlamRGPPGPMGltgrsgpvglpgppgLKGESGDHGPQGPRG 496
Cdd:NF038329 268 AGPDGP----------DGKDGE--------------------RGPVGPAG---------------KDGQNGKDGLPGKDG 302
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 139948691 497 IQGPPGQIGKPGKRGRAGADGARGMPGESGSkgdrgfDGLPGLPGEK 543
Cdd:NF038329 303 KDGQNGKDGLPGKDGKDGQPGKDGLPGKDGK------DGQPGKPAPK 343
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
737-833 |
5.94e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139948691 737 PRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPT 816
Cdd:PRK07764 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694
|
90
....*....|....*..
gi 139948691 817 GPRGARGARGPTGKPGP 833
Cdd:PRK07764 695 GAAPAQPAPAPAATPPA 711
|
|
| PTZ00146 |
PTZ00146 |
fibrillarin; Provisional |
796-835 |
9.33e-03 |
|
fibrillarin; Provisional
Pssm-ID: 240291 Cd Length: 293 Bit Score: 40.10 E-value: 9.33e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 139948691 796 GEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKG 835
Cdd:PTZ00146 5 GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGG 44
|
|
| |
