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Conserved domains on  [gi|157278213|ref|NP_001098206|]
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six-cysteine containing astacin protease 1 precursor [Oryzias latipes]

Protein Classification

zinc metalloprotease; M10 family metallopeptidase domain-containing protein( domain architecture ID 10136819)

zinc metalloprotease may be a member of the astacin-like protease family or the adamalysin/reprolysin-like protease family; M10 family metallopeptidase domain-containing protein is a metalloendopeptidase similar to matrix metalloproteinases that may be endopeptidases that degrade various components of the extracellular matrix

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
92-273 4.70e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


:

Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 4.70e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  92 DGNVYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRTGCWSFVGRRGGGQVVSLMRQGCVFMGT 171
Cdd:cd04283    1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 172 IQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKIETRNLGTPYDYNSIMHYGRFAFSRNREPTIVPIPDPNV 251
Cdd:cd04283   81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNV 160
                        170       180
                 ....*....|....*....|..
gi 157278213 252 PIGRATEMSSNDILRVNRLYEC 273
Cdd:cd04283  161 PIGQRQGMSNLDILRINKLYNC 182
 
Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
92-273 4.70e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 4.70e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  92 DGNVYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRTGCWSFVGRRGGGQVVSLMRQGCVFMGT 171
Cdd:cd04283    1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 172 IQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKIETRNLGTPYDYNSIMHYGRFAFSRNREPTIVPIPDPNV 251
Cdd:cd04283   81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNV 160
                        170       180
                 ....*....|....*....|..
gi 157278213 252 PIGRATEMSSNDILRVNRLYEC 273
Cdd:cd04283  161 PIGQRQGMSNLDILRINKLYNC 182
Astacin pfam01400
Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. ...
86-275 3.82e-72

Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as Swiss:P13497, and Tolloid from drosophila.


Pssm-ID: 426242 [Multi-domain]  Cd Length: 192  Bit Score: 219.84  E-value: 3.82e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213   86 LWPkssdgNVYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQ--RDFVDIQSRTGCWSFVGRRGGGQVVSLmR 163
Cdd:pfam01400   2 KWP-----NGPIPYVIDGSLTGLARALIRQAMRHWENKTCIRFVERTPApdNNYLFFFKGDGCYSYVGRVGGRQPVSI-G 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  164 QGCVFMGTIQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKI---ETRNLGTPYDYNSIMHYGRFAFSRN-R 239
Cdd:pfam01400  76 DGCDKFGIIVHELGHALGFFHEQSRPDRDDYVSINWDNIDPGQEGNFDKYdpsEVDSYGVPYDYGSIMHYGPNAFSKNgS 155
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 157278213  240 EPTIVPI-PDPNVPIGRATEMSSNDILRVNRLYECRS 275
Cdd:pfam01400 156 LPTIVPKdNDYQATIGQRVKLSFYDIKKINKLYKCPS 192
ZnMc smart00235
Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a ...
83-226 4.09e-38

Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.


Pssm-ID: 214576 [Multi-domain]  Cd Length: 139  Bit Score: 130.93  E-value: 4.09e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213    83 RGCLWPkssdgNVYVPFRI-SGQFSSRERDTILQGLRSFEGSTCIRFTPHQS-QRDFVDIQSRT-GCW-SFVGRRGGGQV 158
Cdd:smart00235   1 GSKKWP-----KGTVPYVIdSSSLSPEEREAIAKALAEWSDVTCIRFVERTGtADIYISFGSGDsGCTlSHAGRPGGDQH 75
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157278213   159 VSLmRQGCVFMGTIQHELLHALGFNHEQTRSDRDSHVRILLQNVisgQEHNFRKIETRNLGTPYDYNS 226
Cdd:smart00235  76 LSL-GNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI---DTRNFDLSEDDSLGIPYDYGS 139
 
Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
92-273 4.70e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 4.70e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  92 DGNVYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRTGCWSFVGRRGGGQVVSLMRQGCVFMGT 171
Cdd:cd04283    1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 172 IQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKIETRNLGTPYDYNSIMHYGRFAFSRNREPTIVPIPDPNV 251
Cdd:cd04283   81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNV 160
                        170       180
                 ....*....|....*....|..
gi 157278213 252 PIGRATEMSSNDILRVNRLYEC 273
Cdd:cd04283  161 PIGQRQGMSNLDILRINKLYNC 182
ZnMc_astacin_like cd04280
Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of ...
97-271 2.45e-86

Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.


Pssm-ID: 239807 [Multi-domain]  Cd Length: 180  Bit Score: 255.19  E-value: 2.45e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  97 VPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRTGCWSFVGRRGGGQVVSLMRqGCVFMGTIQHEL 176
Cdd:cd04280    4 VPYVIDGSFDESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVKGSGCWSYVGRVGGRQVVSLGS-GCFSLGTIVHEL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 177 LHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKIETR---NLGTPYDYNSIMHYGRFAFSRNREPTIVPIPDPNVPI 253
Cdd:cd04280   83 MHALGFYHEQSRPDRDDYVTINWENIQPGYEHNFDKYSPDtvtTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQII 162
                        170
                 ....*....|....*...
gi 157278213 254 GRATEMSSNDILRVNRLY 271
Cdd:cd04280  163 GQREGLSFLDIKKINKMY 180
Astacin pfam01400
Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. ...
86-275 3.82e-72

Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as Swiss:P13497, and Tolloid from drosophila.


Pssm-ID: 426242 [Multi-domain]  Cd Length: 192  Bit Score: 219.84  E-value: 3.82e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213   86 LWPkssdgNVYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQ--RDFVDIQSRTGCWSFVGRRGGGQVVSLmR 163
Cdd:pfam01400   2 KWP-----NGPIPYVIDGSLTGLARALIRQAMRHWENKTCIRFVERTPApdNNYLFFFKGDGCYSYVGRVGGRQPVSI-G 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  164 QGCVFMGTIQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKI---ETRNLGTPYDYNSIMHYGRFAFSRN-R 239
Cdd:pfam01400  76 DGCDKFGIIVHELGHALGFFHEQSRPDRDDYVSINWDNIDPGQEGNFDKYdpsEVDSYGVPYDYGSIMHYGPNAFSKNgS 155
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 157278213  240 EPTIVPI-PDPNVPIGRATEMSSNDILRVNRLYECRS 275
Cdd:pfam01400 156 LPTIVPKdNDYQATIGQRVKLSFYDIKKINKLYKCPS 192
ZnMc_meprin cd04282
Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted ...
97-273 6.45e-55

Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.


Pssm-ID: 239809 [Multi-domain]  Cd Length: 230  Bit Score: 177.28  E-value: 6.45e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  97 VPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRTGCWSFVGRRGGGQVVSLmRQGCVFMGTIQHEL 176
Cdd:cd04282   50 IPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKPYEGESNYIFFFKGSGCWSMVGDQQGGQNLSI-GAGCDYKATVEHEF 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 177 LHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKIE---TRNLGTPYDYNSIMHYGRFAFSRNR-EPTIVP-IPDPNV 251
Cdd:cd04282  129 LHALGFYHEQSRSDRDDYVKIWWDQILSGREHNFNKYDdsfSTDLNTPYDYESVMHYSPFSFNKGAsEPTITTkIPEFND 208
                        170       180
                 ....*....|....*....|..
gi 157278213 252 PIGRATEMSSNDILRVNRLYEC 273
Cdd:cd04282  209 IIGQRLDFSDIDLERLNRMYNC 230
ZnMc_BMP1_TLD cd04281
Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) ...
81-273 2.38e-54

Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.


Pssm-ID: 239808 [Multi-domain]  Cd Length: 200  Bit Score: 174.55  E-value: 2.38e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  81 TAR-GCLWPkssDGnvYVPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDIQSRT-GCWSFVGRRGGG-Q 157
Cdd:cd04281    3 TARkERIWP---GG--VIPYVIDGNFTGSQRAMFKQAMRHWENFTCVTFVERTPEENYIVFTYRPcGCCSYVGRRGNGpQ 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 158 VVSLMRQgCVFMGTIQHELLHALGFNHEQTRSDRDSHVRILLQNVISGQEHNFRKI---ETRNLGTPYDYNSIMHYGRFA 234
Cdd:cd04281   78 AISIGKN-CDKFGIVVHELGHVIGFWHEHTRPDRDDHVTIIRENIQPGQEYNFLKMepeEVDSLGEPYDFDSIMHYARNT 156
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 157278213 235 FSRNRE-PTIVPIPDPN---VPIGRATEMSSNDILRVNRLYEC 273
Cdd:cd04281  157 FSRGMFlDTILPKRDPNgvrPEIGQRTRLSEGDIIQANKLYKC 199
ZnMc smart00235
Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a ...
83-226 4.09e-38

Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.


Pssm-ID: 214576 [Multi-domain]  Cd Length: 139  Bit Score: 130.93  E-value: 4.09e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213    83 RGCLWPkssdgNVYVPFRI-SGQFSSRERDTILQGLRSFEGSTCIRFTPHQS-QRDFVDIQSRT-GCW-SFVGRRGGGQV 158
Cdd:smart00235   1 GSKKWP-----KGTVPYVIdSSSLSPEEREAIAKALAEWSDVTCIRFVERTGtADIYISFGSGDsGCTlSHAGRPGGDQH 75
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157278213   159 VSLmRQGCVFMGTIQHELLHALGFNHEQTRSDRDSHVRILLQNVisgQEHNFRKIETRNLGTPYDYNS 226
Cdd:smart00235  76 LSL-GNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI---DTRNFDLSEDDSLGIPYDYGS 139
ZnMc cd00203
Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major ...
105-271 4.48e-23

Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.


Pssm-ID: 238124 [Multi-domain]  Cd Length: 167  Bit Score: 92.59  E-value: 4.48e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 105 FSSRERDTILQGLRSFEGSTCIRFTPHQSQRDFVDI---------QSRTGCWSFVGR--RGGGQVVSLMRQGCV---FMG 170
Cdd:cd00203   19 LSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIailvtrqdfDGGTGGWAYLGRvcDSLRGVGVLQDNQSGtkeGAQ 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 171 TIQHELLHALGFNHEQTRSDRDSHVrillqnvisgqehnfrKIETRNLGTPYDYNSIMHYGRFAFSrnreptivpipdpn 250
Cdd:cd00203   99 TIAHELGHALGFYHDHDRKDRDDYP----------------TIDDTLNAEDDDYYSVMSYTKGSFS-------------- 148
                        170       180
                 ....*....|....*....|.
gi 157278213 251 vpIGRATEMSSNDILRVNRLY 271
Cdd:cd00203  149 --DGQRKDFSQCDIDQINKLY 167
ZnMc_MMP_like cd04268
Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix ...
97-271 7.54e-21

Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.


Pssm-ID: 239796 [Multi-domain]  Cd Length: 165  Bit Score: 86.78  E-value: 7.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213  97 VPFRISGQFSSRERDTILQGLRSFEGSTCIRFTPHQSQRD-------FVDIQSRTGCWSFVGRR---GGGQV-------- 158
Cdd:cd04268    4 ITYYIDDSVPDKLRAAILDAIEAWNKAFAIGFKNANDVDPadirysvIRWIPYNDGTWSYGPSQvdpLTGEIllarvyly 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157278213 159 ---VSLMRQgcVFMGTIQHELLHALGFNHEQTRSDRDSHVrillqnvisgqehnfrkietRNLGTPYDYNSIMHYGRFAF 235
Cdd:cd04268   84 ssfVEYSGA--RLRNTAEHELGHALGLRHNFAASDRDDNV--------------------DLLAEKGDTSSVMDYAPSNF 141
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 157278213 236 SrnreptivpipdPNVPIGRATEMSSNDILRVNRLY 271
Cdd:cd04268  142 S------------IQLGDGQKYTIGPYDIAAIKKLY 165
ZnMc_MMP_like_3 cd04327
Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal ...
168-230 1.16e-04

Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239819 [Multi-domain]  Cd Length: 198  Bit Score: 41.98  E-value: 1.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157278213 168 FMGTIQHELLHALGFNHEQTRSD-----RDSHVRILLQNV-----ISGQEHN-FRKIE-TRNLGTPYDYNSIMHY 230
Cdd:cd04327   92 FSRVVLHEFGHALGFIHEHQSPAanipwDKEAVYAYFSGPpnwdrETVINHNvFAKLDdGDVAYSPYDPDSIMHY 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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