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Conserved domains on  [gi|401782589|ref|NP_001257920|]
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epigen isoform 3 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02887 super family cl31518
EGF-like protein; Provisional
 51-86 4.77e-07

EGF-like protein; Provisional


The actual alignment was detected with superfamily member PHA02887:

Pssm-ID: 165214  Cd Length: 126  Bit Score: 44.53  E-value: 4.77e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 401782589  51 CLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA02887  86 CKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRC 121
PHA03099 super family cl31525
epidermal growth factor-like protein (EGF-like protein); Provisional
 11-86 1.44e-04

epidermal growth factor-like protein (EGF-like protein); Provisional


The actual alignment was detected with superfamily member PHA03099:

Pssm-ID: 165381  Cd Length: 139  Bit Score: 38.47  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401782589  11 LLFNAMT----ALTEEAAVTVTPPITAQQADniegpiaLKFSHLCLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA03099   8 LLFAAMIirsfADSGNAIETTSPEITNATTD-------IPAIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRC 80
 
Name Accession Description Interval E-value
PHA02887 PHA02887
EGF-like protein; Provisional
 51-86 4.77e-07

EGF-like protein; Provisional


Pssm-ID: 165214  Cd Length: 126  Bit Score: 44.53  E-value: 4.77e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 401782589  51 CLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA02887  86 CKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRC 121
PHA03099 PHA03099
epidermal growth factor-like protein (EGF-like protein); Provisional
 11-86 1.44e-04

epidermal growth factor-like protein (EGF-like protein); Provisional


Pssm-ID: 165381  Cd Length: 139  Bit Score: 38.47  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401782589  11 LLFNAMT----ALTEEAAVTVTPPITAQQADniegpiaLKFSHLCLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA03099   8 LLFAAMIirsfADSGNAIETTSPEITNATTD-------IPAIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRC 80
 
Name Accession Description Interval E-value
PHA02887 PHA02887
EGF-like protein; Provisional
 51-86 4.77e-07

EGF-like protein; Provisional


Pssm-ID: 165214  Cd Length: 126  Bit Score: 44.53  E-value: 4.77e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 401782589  51 CLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA02887  86 CKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRC 121
PHA03099 PHA03099
epidermal growth factor-like protein (EGF-like protein); Provisional
 11-86 1.44e-04

epidermal growth factor-like protein (EGF-like protein); Provisional


Pssm-ID: 165381  Cd Length: 139  Bit Score: 38.47  E-value: 1.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401782589  11 LLFNAMT----ALTEEAAVTVTPPITAQQADniegpiaLKFSHLCLEDHNSYCINGACAFHHELEKAICRCFTGYTGERC 86
Cdd:PHA03099   8 LLFAAMIirsfADSGNAIETTSPEITNATTD-------IPAIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRC 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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