NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1044635709|ref|NP_001316514|]
View 

SOSS complex subunit C isoform b [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SOSSC super family cl24483
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 15-98 1.87e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


The actual alignment was detected with superfamily member pfam15925:

Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.18  E-value: 1.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044635709  15 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 76
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 1044635709  77 SGYFITQDSAFGNLILPVLPRL 98
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 15-98 1.87e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.18  E-value: 1.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044635709  15 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 76
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 1044635709  77 SGYFITQDSAFGNLILPVLPRL 98
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 15-98 1.87e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.18  E-value: 1.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1044635709  15 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 76
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 1044635709  77 SGYFITQDSAFGNLILPVLPRL 98
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH