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Conserved domains on  [gi|1926856028|ref|NP_001375361|]
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zinc finger protein 185 isoform 3 [Homo sapiens]

Protein Classification

LIM domain-containing protein( domain architecture ID 13454803)

LIM domain-containing protein; LIM is a small protein-protein interaction domain containing two zinc fingers; similar to mammalian sciellin and zinc finger protein 185

Gene Ontology:  GO:0046872
PubMed:  15520811

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 629-685 3.92e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


:

Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 61.25  E-value: 3.92e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028  629 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 685
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 178-517 5.93e-04

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 5.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 178 SEAASGVLRRTAPREHSYVLSAAKKSTGSPTQETQAPFIAKRVEVVEEDGPSEkSQDPPALARSTPGSNSADGGRT---- 253
Cdd:PRK07764  437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA-PAAAPAAPAAPAAPAGADDAATlrer 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 254 ---------KASRAIWIECLPsmpspaGSQELSSRGEEIVrLQILTPRAGLRLVAPDVegmrsspgnkdkeAPCSRE-LQ 323
Cdd:PRK07764  516 wpeilaavpKRSRKTWAILLP------EATVLGVRGDTLV-LGFSTGGLARRFASPGN-------------AEVLVTaLA 575

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 324 RDLAGEEAFRA---PNTDAARSSAQLSDGNVGSGATGSRPEGLAAVDIGSERGSSSATSVSAVPADRKSNSTAAQEDAKA 400
Cdd:PRK07764  576 EELGGDWQVEAvvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 401 DPKGALADYEGKDVATRVGEAWQERPGAP------------RGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRESCG 468
Cdd:PRK07764  656 HVAVPDASDGGDGWPAKAGGAAPAAPPPApapaapaapagaAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1926856028 469 SSVLTDFEGKDVATKVGEAWQDRPGAPRGGQGDPAVPTQQPADPSTPEQ 517
Cdd:PRK07764  736 DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
 
Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 629-685 3.92e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 61.25  E-value: 3.92e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028  629 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 685
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
LIM cd08368
LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains ...
 630-686 1.99e-08

LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] (where X denotes any amino acid).


Pssm-ID: 259829 [Multi-domain]  Cd Length: 53  Bit Score: 50.78  E-value: 1.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028 630 CTYCNREIRDcpKITLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCY 686
Cdd:cd08368     1 CAGCGKPIEG--RELLRALGKKWHPECFKCAECGKPLGG--DSFYEKDGKPYCEKCY 53
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
 630-690 5.37e-07

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 46.94  E-value: 5.37e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1926856028 630 CTYCNREIRDCPKITLehLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCYEKLF 690
Cdd:pfam00412   1 CAGCNRPIYDRELVRA--LGKVWHPECFRCAVCGKPLTT--GDFYEKDGKLYCKHDYYKLF 57
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 178-517 5.93e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 5.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 178 SEAASGVLRRTAPREHSYVLSAAKKSTGSPTQETQAPFIAKRVEVVEEDGPSEkSQDPPALARSTPGSNSADGGRT---- 253
Cdd:PRK07764  437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA-PAAAPAAPAAPAAPAGADDAATlrer 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 254 ---------KASRAIWIECLPsmpspaGSQELSSRGEEIVrLQILTPRAGLRLVAPDVegmrsspgnkdkeAPCSRE-LQ 323
Cdd:PRK07764  516 wpeilaavpKRSRKTWAILLP------EATVLGVRGDTLV-LGFSTGGLARRFASPGN-------------AEVLVTaLA 575

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 324 RDLAGEEAFRA---PNTDAARSSAQLSDGNVGSGATGSRPEGLAAVDIGSERGSSSATSVSAVPADRKSNSTAAQEDAKA 400
Cdd:PRK07764  576 EELGGDWQVEAvvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 401 DPKGALADYEGKDVATRVGEAWQERPGAP------------RGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRESCG 468
Cdd:PRK07764  656 HVAVPDASDGGDGWPAKAGGAAPAAPPPApapaapaapagaAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1926856028 469 SSVLTDFEGKDVATKVGEAWQDRPGAPRGGQGDPAVPTQQPADPSTPEQ 517
Cdd:PRK07764  736 DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
 
Name Accession Description Interval E-value
LIM smart00132
Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM ...
 629-685 3.92e-12

Zinc-binding domain present in Lin-11, Isl-1, Mec-3; Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.


Pssm-ID: 214528 [Multi-domain]  Cd Length: 54  Bit Score: 61.25  E-value: 3.92e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028  629 ICTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKC 685
Cdd:smart00132   1 KCAGCGKPIYGTERV-LRALGKVWHPECFKCATCGKPLSG--DTFFEKDGKLYCKDC 54
LIM cd08368
LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains ...
 630-686 1.99e-08

LIM is a small protein-protein interaction domain, containing two zinc fingers; LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] (where X denotes any amino acid).


Pssm-ID: 259829 [Multi-domain]  Cd Length: 53  Bit Score: 50.78  E-value: 1.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028 630 CTYCNREIRDcpKITLEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCY 686
Cdd:cd08368     1 CAGCGKPIEG--RELLRALGKKWHPECFKCAECGKPLGG--DSFYEKDGKPYCEKCY 53
LIM pfam00412
LIM domain; This family represents two copies of the LIM structural domain.
 630-690 5.37e-07

LIM domain; This family represents two copies of the LIM structural domain.


Pssm-ID: 395333 [Multi-domain]  Cd Length: 57  Bit Score: 46.94  E-value: 5.37e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1926856028 630 CTYCNREIRDCPKITLehLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCYEKLF 690
Cdd:pfam00412   1 CAGCNRPIYDRELVRA--LGKVWHPECFRCAVCGKPLTT--GDFYEKDGKLYCKHDYYKLF 57
LIM2_FHL cd09345
The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of ...
 630-686 4.12e-05

The second LIM domain of Four and a half LIM domains protein (FHL); The second LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188731 [Multi-domain]  Cd Length: 54  Bit Score: 41.51  E-value: 4.12e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1926856028 630 CTYCNREIRDCPKItLEHLGICCHEYCFKCGICSKPMGdllDQIFIHRD-TIHCGKCY 686
Cdd:cd09345     1 CKACGKAIMPGSKK-MEYKGKFWHEKCFTCSECKKPIG---TKSFIPKDdKIYCVPCY 54
LIM2_FHL1 cd09424
The second LIM domain of Four and a half LIM domains protein 1 (FHL1); The second LIM domain ...
 644-690 1.06e-04

The second LIM domain of Four and a half LIM domains protein 1 (FHL1); The second LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188808  Cd Length: 58  Bit Score: 40.52  E-value: 1.06e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1926856028 644 TLEHLGICCHEYCFKCGICSKPMGDlldQIFIHRDT-IHCGKCYEKLF 690
Cdd:cd09424    14 NVEYKGNVWHKDCFTCSNCKQPIGT---KSFFPKGEdFYCVPCHEKKF 58
LIM1_Testin_like cd09340
The first LIM domain of Testin-like family; The first LIM domain of Testin_like family: This ...
 630-686 4.48e-04

The first LIM domain of Testin-like family; The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188726  Cd Length: 58  Bit Score: 38.74  E-value: 4.48e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 630 CTYCNREIR-DCPKITLEHLG--ICCHEYCFKCGICSKPMGDLLdqIFIHRDTIHCGKCY 686
Cdd:cd09340     1 CEKCKEPINpGEVAVFAERAGedACWHPGCFVCETCNELLVDLI--YFYHDGKIYCGRHY 58
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 178-517 5.93e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 5.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 178 SEAASGVLRRTAPREHSYVLSAAKKSTGSPTQETQAPFIAKRVEVVEEDGPSEkSQDPPALARSTPGSNSADGGRT---- 253
Cdd:PRK07764  437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA-PAAAPAAPAAPAAPAGADDAATlrer 515

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 254 ---------KASRAIWIECLPsmpspaGSQELSSRGEEIVrLQILTPRAGLRLVAPDVegmrsspgnkdkeAPCSRE-LQ 323
Cdd:PRK07764  516 wpeilaavpKRSRKTWAILLP------EATVLGVRGDTLV-LGFSTGGLARRFASPGN-------------AEVLVTaLA 575

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 324 RDLAGEEAFRA---PNTDAARSSAQLSDGNVGSGATGSRPEGLAAVDIGSERGSSSATSVSAVPADRKSNSTAAQEDAKA 400
Cdd:PRK07764  576 EELGGDWQVEAvvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 401 DPKGALADYEGKDVATRVGEAWQERPGAP------------RGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRESCG 468
Cdd:PRK07764  656 HVAVPDASDGGDGWPAKAGGAAPAAPPPApapaapaapagaAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1926856028 469 SSVLTDFEGKDVATKVGEAWQDRPGAPRGGQGDPAVPTQQPADPSTPEQ 517
Cdd:PRK07764  736 DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
LIM1_FHL1 cd09344
The first LIM domain of Four and a half LIM domains protein 1; The first LIM domain of Four ...
 630-685 7.81e-04

The first LIM domain of Four and a half LIM domains protein 1; The first LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188730  Cd Length: 54  Bit Score: 37.81  E-value: 7.81e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1926856028 630 CTYCNREIRDCPKiTLEHLGICCHEYCFKCGICSKPmgdLLDQIFIHRDT-IHCGKC 685
Cdd:cd09344     1 CAECRKPIGADSK-ELHHKNRYWHETCFRCAKCYKP---LANEPFVAKDNkILCGKC 53
LIM2_FHL2 cd09426
The second LIM domain of Four and a half LIM domains protein 2 (FHL2); The second LIM domain ...
 630-688 4.33e-03

The second LIM domain of Four and a half LIM domains protein 2 (FHL2); The second LIM domain of Four and a half LIM domains protein 2 (FHL2): FHL2 is one of the best studied FHL proteins. FHL2 expression is most abundant in the heart, and in brain, liver and lung to a lesser extent. FHL2 participates in a wide range of cellular processes, such as transcriptional regulation, signal transduction, and cell survival by binding to various protein partners. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. Although FHL2 is abundantly expressed in heart, the fhl2 null mice are viable and had no detectable abnormal cardiac phenotype. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to s upport the assembly of multimeric protein complexes.


Pssm-ID: 188810  Cd Length: 57  Bit Score: 35.80  E-value: 4.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 630 CTYCNREIRDCPKiTLEHLGICCHEYCFKCGICSKPMGdllDQIFIHRDTIH-CGKCYEK 688
Cdd:cd09426     1 CSECKKTIMPGTR-KMEYKGNSWHETCFICQRCQQPIG---TKSFIPKDNQNfCVPCYEK 56
LIM4_FHL1 cd09348
The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1); The fourth LIM domain ...
 630-689 6.87e-03

The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1); The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188734  Cd Length: 64  Bit Score: 35.51  E-value: 6.87e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1926856028 630 CTYCNREIRDCPKIT--LEHLGICCHEYCFKCGICSKPMGDllDQIFIHRDTIHCGKCYEKL 689
Cdd:cd09348     5 CSGCQNPITGFGKGTnvVNYEGSSWHDYCFNCKKCSLNLAN--KRFVFHNGQIYCSDCAKKL 64
LIM1_Prickle cd09415
The first LIM domain of Prickle; The first LIM domain of Prickle: Prickle contains three ...
 649-684 7.76e-03

The first LIM domain of Prickle; The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.


Pssm-ID: 188799  Cd Length: 59  Bit Score: 35.31  E-value: 7.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1926856028 649 GICCHEYCFKCGICSKPMGDLldqIFIHRD-TIHCGK 684
Cdd:cd09415    23 GACWHPACFVCSTCKELLVDL---IYFYQDgKVYCGR 56
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
62-317 9.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 9.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028  62 ATSFSSAGEVPKPRPPSTRAPTGYIIRGVFTKPIDSSSQPQQQFPKANGTPKSAASLVRTANAGPPR---PSSSGyKMTT 138
Cdd:PRK07003  362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAapaPPATA-DRGD 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 139 EDYKKLAPYNIRRSSTSGDTEEEEEEEVVPFSSDEQKrrsEAASGVLRRTAPREHSYVLSAAKKSTGSPTQETQAPFIAK 218
Cdd:PRK07003  441 DAADGDAPVPAKANARASADSRCDERDAQPPADSGSA---SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926856028 219 RVEVVEEDGPSEKSQDPPALARSTPGSN------------------SADGGRTKASRAiwiecLPSMPSPAGSQELSSRg 280
Cdd:PRK07003  518 REDAPAAAAPPAPEARPPTPAAAAPAARaggaaaaldvlrnagmrvSSDRGARAAAAA-----KPAAAPAAAPKPAAPR- 591

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1926856028 281 eeiVRLQILTPRAGLRLVAPDVEG-MRSSPGNKDKEAP 317
Cdd:PRK07003  592 ---VAVQVPTPRARAATGDAPPNGaARAEQAAESRGAP 626
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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