vascular endothelial zinc finger 1 isoform 2 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
SFP1 super family | cl25788 | Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
230-287 | 7.10e-06 | |||
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; The actual alignment was detected with superfamily member COG5189: Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 48.56 E-value: 7.10e-06
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motB super family | cl32828 | flagellar motor protein MotB; Reviewed |
409-526 | 3.91e-03 | |||
flagellar motor protein MotB; Reviewed The actual alignment was detected with superfamily member PRK12799: Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 39.70 E-value: 3.91e-03
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
206-228 | 8.07e-03 | |||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. : Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.20 E-value: 8.07e-03
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Name | Accession | Description | Interval | E-value | |||
SFP1 | COG5189 | Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
230-287 | 7.10e-06 | |||
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 48.56 E-value: 7.10e-06
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
220-245 | 2.49e-04 | |||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.51 E-value: 2.49e-04
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motB | PRK12799 | flagellar motor protein MotB; Reviewed |
409-526 | 3.91e-03 | |||
flagellar motor protein MotB; Reviewed Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 39.70 E-value: 3.91e-03
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Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
418-546 | 7.90e-03 | |||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 39.13 E-value: 7.90e-03
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
206-228 | 8.07e-03 | |||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.20 E-value: 8.07e-03
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Name | Accession | Description | Interval | E-value | |||
SFP1 | COG5189 | Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ... |
230-287 | 7.10e-06 | |||
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; Pssm-ID: 227516 [Multi-domain] Cd Length: 423 Bit Score: 48.56 E-value: 7.10e-06
|
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
220-245 | 2.49e-04 | |||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 38.51 E-value: 2.49e-04
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motB | PRK12799 | flagellar motor protein MotB; Reviewed |
409-526 | 3.91e-03 | |||
flagellar motor protein MotB; Reviewed Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 39.70 E-value: 3.91e-03
|
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Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
418-546 | 7.90e-03 | |||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 39.13 E-value: 7.90e-03
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
206-228 | 8.07e-03 | |||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 34.20 E-value: 8.07e-03
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Blast search parameters | ||||
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