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Conserved domains on  [gi|2311270484|ref|NP_001399331|]
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epsin-1 isoform 19 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 52-219 1.51e-07

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.07  E-value: 1.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  52 PQASDPWGGPASVPTAVPVaaaasdpwGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPD 131
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAA--------AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA 686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 132 PWGSSDGGAPVSGPPSSDPWAPAPA--FSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELELLA 209
Cdd:PRK07764  687 PAAPAAPAGAAPAQPAPAPAATPPAgqADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

                         170
                  ....*....|
gi 2311270484 210 GEVPARSPGA 219
Cdd:PRK07764  767 AAAPAAAPPP 776
 
Name Accession Description Interval E-value
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 52-219 1.51e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.07  E-value: 1.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  52 PQASDPWGGPASVPTAVPVaaaasdpwGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPD 131
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAA--------AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA 686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 132 PWGSSDGGAPVSGPPSSDPWAPAPA--FSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELELLA 209
Cdd:PRK07764  687 PAAPAAPAGAAPAQPAPAPAATPPAgqADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

                         170
                  ....*....|
gi 2311270484 210 GEVPARSPGA 219
Cdd:PRK07764  767 AAAPAAAPPP 776
 
Name Accession Description Interval E-value
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 52-219 1.51e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.07  E-value: 1.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  52 PQASDPWGGPASVPTAVPVaaaasdpwGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPD 131
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAA--------AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA 686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 132 PWGSSDGGAPVSGPPSSDPWAPAPA--FSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELELLA 209
Cdd:PRK07764  687 PAAPAAPAGAAPAQPAPAPAATPPAgqADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

                         170
                  ....*....|
gi 2311270484 210 GEVPARSPGA 219
Cdd:PRK07764  767 AAAPAAAPPP 776
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 49-184 4.83e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.44  E-value: 4.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  49 PAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPA--ADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGE 126
Cdd:PRK07764  649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPApaAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2311270484 127 GPTPdpwGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDE 184
Cdd:PRK07764  729 SAPS---PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 48-150 8.74e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 8.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  48 TPAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEG 127
Cdd:PRK07764  402 AAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPA 481

                          90       100
                  ....*....|....*....|...
gi 2311270484 128 PTPDPWGSSDGGAPVSGPPSSDP 150
Cdd:PRK07764  482 PAPPAAPAPAAAPAAPAAPAAPA 504
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 47-300 1.19e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484   47 TTPAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPwggtPAPAAGE 126
Cdd:PHA03307   113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE----TARAPSS 188

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  127 GPTPDPWGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELE 206
Cdd:PHA03307   189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  207 LLAGEVPARSPGAFDMSGVGGSLAESVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPGSKASNPFL 286
Cdd:PHA03307   269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPS 348

                          250
                   ....*....|....
gi 2311270484  287 PSGAPPTGPSVTNP 300
Cdd:PHA03307   349 RSPSPSRPPPPADP 362
PHA03247 PHA03247
large tegument protein UL36; Provisional
 38-169 2.03e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 2.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484   38 SLMDLADVFTTPAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPT--------PASGDPWRPAAPT 109
Cdd:PHA03247  2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgparparpPTTAGPPAPAPPA 2773

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  110 GPSVDPWGGTPAPAAGE-----GPTPDPWGSSDGGAPVSG-----PPSSDPWAPAPAFSDPWGGSPAKPS 169
Cdd:PHA03247  2774 APAAGPPRRLTRPAVASlsesrESLPSPWDPADPPAAVLApaaalPPAASPAGPLPPPTSAQPTAPPPPP 2843
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 79-184 7.10e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 7.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  79 GGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGAPVSGPPSSDPW-APAPAF 157
Cdd:PRK07764  595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDgWPAKAG 674

                          90       100
                  ....*....|....*....|....*..
gi 2311270484 158 SDPWGGSPAKPSSNGTAVGGFDTEPDE 184
Cdd:PRK07764  675 GAAPAAPPPAPAPAAPAAPAGAAPAQP 701
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
48-216 7.34e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 7.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  48 TPAPPQASdPWGGPASVPTAVPVAAAASdpwggpAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEG 127
Cdd:PRK12323  398 APAAPPAA-PAAAPAAAAAARAVAAAPA------RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPR 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 128 PTPDPwgssDGGAPVSGPPSSDPwAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELEL 207
Cdd:PRK12323  471 PVAAA----AAAAPARAAPAAAP-APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP 545


                  ....*....
gi 2311270484 208 LAGEVPARS 216
Cdd:PRK12323  546 AAAPAPRAA 554
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 48-155 9.78e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  48 TPAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEG 127
Cdd:PRK14951  380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                          90       100
                  ....*....|....*....|....*...
gi 2311270484 128 PTPDPWGSSDGGAPVSGPPSSDPWAPAP 155
Cdd:PRK14951  460 VAIPVRVAPEPAVASAAPAPAAAPAAAR 487
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 47-156 1.39e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  47 TTPAPPQASDPWGGPASVPTAVPVAAAASDPwgGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPA--PAA 124
Cdd:PRK07764  391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAA--APAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSaqPAP 468

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2311270484 125 GEGPTPDPWGSSDGGAPVSGPPSSDPWAPAPA 156
Cdd:PRK07764  469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 82-170 2.66e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 2.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484   82 AVPPA-----ADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGAPVSGPPSSDPWAPAPA 156
Cdd:PRK12270    24 SVDPSwreffADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

                           90
                   ....*....|....
gi 2311270484  157 FSDPWGGSPAKPSS 170
Cdd:PRK12270   104 AAAAPAAAAVEDEV 117
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 79-174 2.88e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 2.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  79 GGPAVPPAADPwGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGAPVSGPPSSDPWAPAPAFS 158
Cdd:PRK07764  400 SAAAAAPAAAP-APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTA 478

                          90
                  ....*....|....*.
gi 2311270484 159 DPWGGSPAKPSSNGTA 174
Cdd:PRK07764  479 APAPAPPAAPAPAAAP 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 51-253 3.52e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 3.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  51 PPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGA-APTPASGDPWRPAAPTGPSVDPWGGTPAPAagegpT 129
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAaAPAEASAAPAPGVAAPEHHPKHVAVPDASD-----G 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 130 PDPWGSSDGGAPVSGPPSSDPWAPAPAfsdPWGGSPAKPSSNGTAvggfdTEPDEFSDFDRLRTALPTSGSSTGELELLA 209
Cdd:PRK07764  666 GDGWPAKAGGAAPAAPPPAPAPAAPAA---PAGAAPAQPAPAPAA-----TPPAGQADDPAAQPPQAAQGASAPSPAADD 737

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2311270484 210 GEVPARSPGAFDMSGVGGSLAESVGSPPPAATPTPTPPTRKTPE 253
Cdd:PRK07764  738 PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
49-214 4.05e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.09  E-value: 4.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  49 PAPPQASDPWG-GPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPwRPAAPTGPSVDPWGGTPAPAAGEG 127
Cdd:PRK12323  415 AARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP-RPVAAAAAAAPARAAPAAAPAPAD 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 128 PTPDPWGSSDGGAPVSGPPSSDP---WAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGE 204
Cdd:PRK12323  494 DDPPPWEELPPEFASPAPAQPDAapaGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573

                         170
                  ....*....|
gi 2311270484 205 LELLAGEVPA 214
Cdd:PRK12323  574 PDMFDGDWPA 583
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 49-176 4.57e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.81  E-value: 4.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  49 PAPPQASDPWGGPASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGP 128
Cdd:PRK07764  678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2311270484 129 TPDPWGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVG 176
Cdd:PRK07764  758 PPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
49-215 4.91e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 4.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  49 PAPPQASDPWGGPASVPTAVPVAAAAsdpwggPAVPPAADPWGG----AAPTPASGDPWRPAAPTGPSVDPWGGTPAPAA 124
Cdd:PRK12323  434 AAARQASARGPGGAPAPAPAPAAAPA------AAARPAAAGPRPvaaaAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484 125 GEGP-TPDPWGSSDGGAPVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVGGFDTEPDEFSDfdrlrtalPTSGSSTG 203
Cdd:PRK12323  508 SPAPaQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS--------GLPDMFDG 579

                         170
                  ....*....|..
gi 2311270484 204 ELELLAGEVPAR 215
Cdd:PRK12323  580 DWPALAARLPVR 591
PHA03247 PHA03247
large tegument protein UL36; Provisional
 81-156 5.31e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 5.31e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2311270484   81 PAVPPAADPWGGAAPTPASGDPWRPAAPTgpsvdpwggTPAPAAGEGPTPDPWGSSDGGAPVSGPPSSDPWAPAPA 156
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPE---------AAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPA 321
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 61-181 5.99e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 5.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  61 PASVPTAVPVAAAASDPWGGPAVPPAADPWGGAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDPwgssdGGA 140
Cdd:PRK07764  395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP-----APA 469

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2311270484 141 PVSGPPSSDPWAPAPAFSDPWGGSPAKPSSNGTAVGGFDTE 181
Cdd:PRK07764  470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
PHA03247 PHA03247
large tegument protein UL36; Provisional
 92-308 7.24e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 7.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484   92 GAAPTPASGDPWRPAAPTGPSVDPWGGTPAPAAGEGPTPDPW---------GSSDGGAPvsgPPSSDPWAPAPAFSDPWG 162
Cdd:PHA03247  2493 GAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLtwirgleelASDDAGDP---PPPLPPAAPPAAPDRSVP 2569

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  163 GSPAKPSSNGTAVGGFDTEPDEFSDFDRLRTALPTSGSSTGELELLAGE---------VPARSPGAFDMSGVGGSLAESV 233
Cdd:PHA03247  2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPpdthapdppPPSPSPAANEPDPHPPPTVPPP 2649

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  234 GSPPPAATPTPTPPTRKTPESF--------------------LGPNAALVDLDSLVSRPGPTPPGSKASNPFLPSGAPPT 293
Cdd:PHA03247  2650 ERPRDDPAPGRVSRPRRARRLGraaqassppqrprrraarptVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729

                          250
                   ....*....|....*
gi 2311270484  294 GPSVTNPFQPAPPAT 308
Cdd:PHA03247  2730 QASPALPAAPAPPAV 2744
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 47-141 9.84e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 37.74  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2311270484  47 TTPAPPQASDPWGGPASVPTAVPVAAAASDPwggPAVPPAADPWGGAAPTPA-SGDPWRPaAPTGPSVDPWGGTPAPAAG 125
Cdd:PRK14959  396 TIPTPGTQGPQGTAPAAGMTPSSAAPATPAP---SAAPSPRVPWDDAPPAPPrSGIPPRP-APRMPEASPVPGAPDSVAS 471

                          90
                  ....*....|....*.
gi 2311270484 126 EGPTPDPWGSSDGGAP 141
Cdd:PRK14959  472 ASDAPPTLGDPSDTAE 487
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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