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activity-regulated cytoskeleton-associated protein [Homo sapiens]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Arc_MA | pfam19284 | Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated ... |
46-154 | 1.86e-66 | |||
Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated Cytoskeleton-Associated protein (Arc). This domain might be involved in stabilising the relative domain orientations of the capside-like domain (CA) upon capsid assembly. Arc is a regulator of synaptic scaling and dendrite remodelling. : Pssm-ID: 437116 Cd Length: 108 Bit Score: 206.32 E-value: 1.86e-66
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Arc_C super family | cl39536 | Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. ... |
278-360 | 3.22e-44 | |||
Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. The Arc protein modulates the trafficking of AMPA-type glutamate receptors. This domains tertiary structure is similar to the capsid domain of HIV gag protein. The domain is thought to have evolved from the capsid domain of Ty3/Gypsy retrotransposon. The actual alignment was detected with superfamily member pfam18162: Pssm-ID: 465670 Cd Length: 83 Bit Score: 148.31 E-value: 3.22e-44
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Name | Accession | Description | Interval | E-value | |||
Arc_MA | pfam19284 | Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated ... |
46-154 | 1.86e-66 | |||
Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated Cytoskeleton-Associated protein (Arc). This domain might be involved in stabilising the relative domain orientations of the capside-like domain (CA) upon capsid assembly. Arc is a regulator of synaptic scaling and dendrite remodelling. Pssm-ID: 437116 Cd Length: 108 Bit Score: 206.32 E-value: 1.86e-66
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Arc_C | pfam18162 | Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. ... |
278-360 | 3.22e-44 | |||
Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. The Arc protein modulates the trafficking of AMPA-type glutamate receptors. This domains tertiary structure is similar to the capsid domain of HIV gag protein. The domain is thought to have evolved from the capsid domain of Ty3/Gypsy retrotransposon. Pssm-ID: 465670 Cd Length: 83 Bit Score: 148.31 E-value: 3.22e-44
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Name | Accession | Description | Interval | E-value | |||
Arc_MA | pfam19284 | Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated ... |
46-154 | 1.86e-66 | |||
Arc MA domain; This is the N-terminal matrix-like domain (MA) of Activity-Regulated Cytoskeleton-Associated protein (Arc). This domain might be involved in stabilising the relative domain orientations of the capside-like domain (CA) upon capsid assembly. Arc is a regulator of synaptic scaling and dendrite remodelling. Pssm-ID: 437116 Cd Length: 108 Bit Score: 206.32 E-value: 1.86e-66
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Arc_C | pfam18162 | Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. ... |
278-360 | 3.22e-44 | |||
Arc C-lobe; This is the C-terminal domain of Arc protein present in found in Rattus norvegicus. The Arc protein modulates the trafficking of AMPA-type glutamate receptors. This domains tertiary structure is similar to the capsid domain of HIV gag protein. The domain is thought to have evolved from the capsid domain of Ty3/Gypsy retrotransposon. Pssm-ID: 465670 Cd Length: 83 Bit Score: 148.31 E-value: 3.22e-44
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Blast search parameters | ||||
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