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Conserved domains on  [gi|119709832|ref|NP_002326|]
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low-density lipoprotein receptor-related protein 5 isoform 1 precursor [Homo sapiens]

Protein Classification

NHL repeat-containing protein( domain architecture ID 10991763)

NHL (NCL-1, HT2A and LIN-41) repeat-containing protein may have a catalytic activity or interact with other proteins; NHL is a six-bladed beta-propeller

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
163-203 3.12e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 3.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   163 GYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTID 203
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
299-336 3.41e-13

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 64.96  E-value: 3.41e-13
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832   299 CEEDNGGCSHLCLLSPSepFYTCACPTGVQLQDNGRTC 336
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
408-450 1.92e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.00  E-value: 1.92e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    408 QTLVNTEINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSR 450
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1258-1295 1.35e-11

Low-density lipoprotein receptor domain class A;


:

Pssm-ID: 395011  Cd Length: 37  Bit Score: 60.34  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832  1258 TCSPDQFACATGEidCIPGAWRCDGFPECDDQSDEEGC 1295
Cdd:pfam00057    2 TCSPNEFQCGSGE--CIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
495-537 1.41e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 1.41e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    495 RVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEVINVDGTKR 537
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1336-1370 1.61e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 60.30  E-value: 1.61e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMC 1370
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
451-494 4.43e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 59.15  E-value: 4.43e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    451 KILVSEDLDEPRAIALHPVMGLMYWTDWGeNPKIECANLDGQER 494
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1298-1332 4.76e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.76  E-value: 4.76e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDEADC 1332
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
906-941 6.93e-11

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 58.41  E-value: 6.93e-11
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   906 CMHNNGQCGQLCLAIPGGHRCGCASHYTLDPSSRNC 941
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
710-752 7.58e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.38  E-value: 7.58e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    710 EHVVEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFR 752
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
102-142 2.36e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.36e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    102 VVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 142
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
187-229 2.38e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.38e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    187 KIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFR 229
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
605-640 8.60e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 8.60e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   605 CADRNGGCSHLCFFTPHATRCGCPIGLELLSDMKTC 640
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
753-796 7.96e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 7.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    753 QVLVWRDLDNPRSLALDPTKGYIYWTEWgGKPRIVRAFMDGTNC 796
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-GLDVIEVANLDGTNR 43
NHL super family cl18310
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
685-878 1.30e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


The actual alignment was detected with superfamily member cd05819:

Pssm-ID: 302697 [Multi-domain]  Cd Length: 269  Bit Score: 55.02  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  685 SNNHIYWTDVSLKTISR-----AFMNGSSVEHVVEFGLDYPEGMAVDwMGKNLYWADTGTNRIEVARLDGQFRQVLV--- 756
Cdd:cd05819    17 SSGNIYVADTGNNRIQVfdpdgNFITSFGSFGSGDGQFNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNFLASFGgsg 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  757 --WRDLDNPRSLALDPtKGYIYWTEWGGKpRIVRaFMDGTNCMTLVDKVGRAN-------DLTIDyADQRLYWTDLDTNM 827
Cdd:cd05819    96 dgDGEFNGPRGIAVDS-SGNIYVADTGNH-RIQK-FDPDGEFLTTFGSGGSGPgqfngptGVAVD-SDGNIYVADTGNHR 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  828 IE----SSNML---GQERVVIAdDLPHPFGLT-QYSDYIYWTDWNLHSIERADKTSGRN 878
Cdd:cd05819   172 IQvfdpDGNFLttfGSTGTGPG-QFNYPTGIAvDSDGNIYVADSGNNRVQVFDPDGAGF 229
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
27-214 1.54e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 54.31  E-value: 1.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   27 APAAASPLLLFANRRDVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGA----VYWTDVSEEAIkqTYLNQTGAAVQNV 102
Cdd:COG3391    28 LGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGAdgrrLYVANSGSGRV--SVIDLATGKVVAT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  103 VISGlVSPDGLACDWVGKKLYWTDSETNRIEVanLNGTSRKVL-FWQDLDQPRAIALDPAHGYMYWTDWGeTPRIER--A 179
Cdd:COG3391   106 IPVG-GGPRGLAVDPDGGRLYVADSGNGRVSV--IDTATGKVVaTIPVGAGPHGIAVDPDGKRLYVANSG-SNTVSVivS 181
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 119709832  180 GMDGSTRKII--VDSDIYwPNGLTIDLEEQKLYWADA 214
Cdd:COG3391   182 VIDTATGKVVatIPVGGG-PVGVAVSPDGRRLYVANR 217
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
366-406 2.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 2.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    366 VLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSG 406
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1104-1146 1.12e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 46.83  E-value: 1.12e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832   1104 EVLFTTGLIRPVALVVDNTLGKLFWVDADLKRIESCDLSGANR 1146
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1217-1253 1.29e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 1.29e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 119709832  1217 CARDNGGCSHICIAKGDGTpRCSCPVHLVLLQNLLTC 1253
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGY-TCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
538-571 2.75e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.89  E-value: 2.75e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 119709832    538 RTLLEDKLPHIFGFTL--LGDFIYWTDWQRRSIERV 571
Cdd:smart00135    1 RTLLSSGLGHPNGLAVdwIEGRLYWTDWGLDVIEVA 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
970-1009 5.36e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.12  E-value: 5.36e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    970 ILPLHGLRNVKAIDYDPLDKFIYWVD-GRQNIKRAKDDGTQ 1009
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDwGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1060-1103 2.03e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.58  E-value: 2.03e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832   1060 VVLRGDRDKPRAIVVNAERGYLYFTNMqdRAAKIERAALDGTER 1103
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
230-264 8.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 35.66  E-value: 8.63e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 119709832    230 QKVVEGSLTHP--FALTLSGDTLYWTDWQTRSIHACN 264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVAN 37
 
Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
163-203 3.12e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 3.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   163 GYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTID 203
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
299-336 3.41e-13

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 64.96  E-value: 3.41e-13
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832   299 CEEDNGGCSHLCLLSPSepFYTCACPTGVQLQDNGRTC 336
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
408-450 1.92e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.00  E-value: 1.92e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    408 QTLVNTEINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSR 450
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1258-1295 1.35e-11

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 60.34  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832  1258 TCSPDQFACATGEidCIPGAWRCDGFPECDDQSDEEGC 1295
Cdd:pfam00057    2 TCSPNEFQCGSGE--CIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
495-537 1.41e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 1.41e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    495 RVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEVINVDGTKR 537
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1336-1370 1.61e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 60.30  E-value: 1.61e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMC 1370
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1259-1295 3.35e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.14  E-value: 3.35e-11
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 119709832 1259 CSPDQFACATGEidCIPGAWRCDGFPECDDQSDEEGC 1295
Cdd:cd00112     1 CPPNEFRCANGR--CIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
451-494 4.43e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 59.15  E-value: 4.43e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    451 KILVSEDLDEPRAIALHPVMGLMYWTDWGeNPKIECANLDGQER 494
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1298-1332 4.76e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.76  E-value: 4.76e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDEADC 1332
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
906-941 6.93e-11

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 58.41  E-value: 6.93e-11
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   906 CMHNNGQCGQLCLAIPGGHRCGCASHYTLDPSSRNC 941
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
710-752 7.58e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.38  E-value: 7.58e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    710 EHVVEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFR 752
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
143-186 1.01e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 1.01e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    143 KVLFWQDLDQPRAIALDPAHGYMYWTDWGeTPRIERAGMDGSTR 186
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
471-511 1.45e-10

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 57.55  E-value: 1.45e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   471 GLMYWTDWGENPKIECANLDGQERRVLVNASLGWPNGLALD 511
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
102-142 2.36e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.36e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    102 VVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 142
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
187-229 2.38e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.38e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    187 KIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFR 229
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1258-1292 3.24e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.49  E-value: 3.24e-10
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 119709832   1258 TCSPDQFACATGEidCIPGAWRCDGFPECDDQSDE 1292
Cdd:smart00192    1 TCPPGEFQCDNGR--CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1298-1332 1.31e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.95  E-value: 1.31e-09
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 119709832  1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDEADC 1332
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1336-1367 1.94e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 1.94e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 119709832   1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDE 1367
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
121-160 2.27e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 54.09  E-value: 2.27e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   121 KLYWTDSET-NRIEVANLNGTSRKVLFWQDLDQPRAIALDP 160
Cdd:pfam00058    2 RLYWTDSSLrASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1336-1370 6.33e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.02  E-value: 6.33e-09
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 119709832  1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMC 1370
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
605-640 8.60e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 8.60e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   605 CADRNGGCSHLCFFTPHATRCGCPIGLELLSDMKTC 640
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
428-468 1.47e-08

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 51.78  E-value: 1.47e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   428 RNLYWTDTGTD-RIEVTRLNGTSRKILVSEDLDEPRAIALHP 468
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1298-1329 1.60e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.48  E-value: 1.60e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 119709832   1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDE 1329
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
753-796 7.96e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 7.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    753 QVLVWRDLDNPRSLALDPTKGYIYWTEWgGKPRIVRAFMDGTNC 796
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-GLDVIEVANLDGTNR 43
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
685-878 1.30e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 55.02  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  685 SNNHIYWTDVSLKTISR-----AFMNGSSVEHVVEFGLDYPEGMAVDwMGKNLYWADTGTNRIEVARLDGQFRQVLV--- 756
Cdd:cd05819    17 SSGNIYVADTGNNRIQVfdpdgNFITSFGSFGSGDGQFNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNFLASFGgsg 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  757 --WRDLDNPRSLALDPtKGYIYWTEWGGKpRIVRaFMDGTNCMTLVDKVGRAN-------DLTIDyADQRLYWTDLDTNM 827
Cdd:cd05819    96 dgDGEFNGPRGIAVDS-SGNIYVADTGNH-RIQK-FDPDGEFLTTFGSGGSGPgqfngptGVAVD-SDGNIYVADTGNHR 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  828 IE----SSNML---GQERVVIAdDLPHPFGLT-QYSDYIYWTDWNLHSIERADKTSGRN 878
Cdd:cd05819   172 IQvfdpDGNFLttfGSTGTGPG-QFNYPTGIAvDSDGNIYVADSGNNRVQVFDPDGAGF 229
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
349-562 1.33e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 54.31  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  349 RTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGIAVDWVAR 428
Cdd:COG3391     1 ALVASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  429 NLYWTDTGTDRIEVtrLNGTSRKILVSEDL-DEPRAIALHPVMGLMYWTDWGENpKIecANLDGQERRVLVNASLG-WPN 506
Cdd:COG3391    81 RLYVANSGSGRVSV--IDLATGKVVATIPVgGGPRGLAVDPDGGRLYVADSGNG-RV--SVIDTATGKVVATIPVGaGPH 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119709832  507 GLALDLQEGKLYWGDAKTDKI----EVINV-DGTKRRTLLEDKLPHIFGFTLLGDFIYWTD 562
Cdd:COG3391   156 GIAVDPDGKRLYVANSGSNTVsvivSVIDTaTGKVVATIPVGGGPVGVAVSPDGRRLYVAN 216
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
374-535 1.49e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 54.63  E-value: 1.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  374 HAIAIDYDpleGYVYWTDDEVRAIRR-----AYLDGSGAQTLVNTEINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGT 448
Cdd:cd05819    58 AGVAVDSD---GNLYVADTGNHRIQKfdpdgNFLASFGGSGDGDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGE 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  449 SRKIL-----VSEDLDEPRAIALHPVmGLMYWTDWGENpKIECANLDGQERRVL-----VNASLGWPNGLALDlQEGKLY 518
Cdd:cd05819   134 FLTTFgsggsGPGQFNGPTGVAVDSD-GNIYVADTGNH-RIQVFDPDGNFLTTFgstgtGPGQFNYPTGIAVD-SDGNIY 210
                         170
                  ....*....|....*..
gi 119709832  519 WGDAKTDKIEVINVDGT 535
Cdd:cd05819   211 VADSGNNRVQVFDPDGA 227
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
27-214 1.54e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 54.31  E-value: 1.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   27 APAAASPLLLFANRRDVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGA----VYWTDVSEEAIkqTYLNQTGAAVQNV 102
Cdd:COG3391    28 LGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGAdgrrLYVANSGSGRV--SVIDLATGKVVAT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  103 VISGlVSPDGLACDWVGKKLYWTDSETNRIEVanLNGTSRKVL-FWQDLDQPRAIALDPAHGYMYWTDWGeTPRIER--A 179
Cdd:COG3391   106 IPVG-GGPRGLAVDPDGGRLYVADSGNGRVSV--IDTATGKVVaTIPVGAGPHGIAVDPDGKRLYVANSG-SNTVSVivS 181
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 119709832  180 GMDGSTRKII--VDSDIYwPNGLTIDLEEQKLYWADA 214
Cdd:COG3391   182 VIDTATGKVVatIPVGGG-PVGVAVSPDGRRLYVANR 217
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
648-782 2.11e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 53.93  E-value: 2.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  648 VFTSRAAIHRIS-LETNNNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVVEFGlDYPEGMAVD 726
Cdd:COG3391    82 LYVANSGSGRVSvIDLATGKVVATIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVG-AGPHGIAVD 160
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  727 WMGKNLYWADTGTNRIE--VARLDGQFRQVL-VWRDLDNPRSLALDPTKGYIYWTEWGG 782
Cdd:COG3391   161 PDGKRLYVANSGSNTVSviVSVIDTATGKVVaTIPVGGGPVGVAVSPDGRRLYVANRGS 219
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
366-406 2.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 2.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    366 VLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSG 406
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1104-1146 1.12e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 46.83  E-value: 1.12e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832   1104 EVLFTTGLIRPVALVVDNTLGKLFWVDADLKRIESCDLSGANR 1146
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
37-169 1.28e-06

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 51.44  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   37 FANRRDVRLvdAGGVKLESTIVVSGLEDAA--AVDFQfskGAVYWTD-VSEEAIKQtylnQTGAAVQNVV-ISGLVSPDG 112
Cdd:cd14952    70 FGNNRVLKL--AAGSTTQTVLPFTGLNDPTgvAVDAA---GNVYVADtGNNRVLKL----AAGSNTQTVLpFTGLSNPDG 140
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119709832  113 LACDWVGKkLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAhGYMYWTD 169
Cdd:cd14952   141 VAVDGAGN-VYVTDTGNNRVLKLAAGSTTQTVLPFTGLNSPSGVAVDTA-GNVYVTD 195
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1217-1253 1.29e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 1.29e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 119709832  1217 CARDNGGCSHICIAKGDGTpRCSCPVHLVLLQNLLTC 1253
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGY-TCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
799-838 2.77e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 45.67  E-value: 2.77e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 119709832    799 LVDKVGRANDLTIDYADQRLYWTDLDTNMIESSNMLGQER 838
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
C_rich_MXAN6577 NF041328
MXAN_6577-like cysteine-rich domain;
1253-1348 3.73e-06

MXAN_6577-like cysteine-rich domain;


Pssm-ID: 469225 [Multi-domain]  Cd Length: 145  Bit Score: 48.22  E-value: 3.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832 1253 CGEppTCSPDQfACATGEIDCIPGAWRCDGfpEC-DDQSDEEGCPVCSAAQFP---CARGQCVDL----RLRCDGEadCQ 1324
Cdd:NF041328   45 CGV--ACGAGQ-TCVAGACGCGPGTVACGG--ACvDTASDPAHCGACGAACAPgqvCEGGACREAcsegLTRCGGA--CV 117
                          90       100
                  ....*....|....*....|....*...
gi 119709832 1325 D-RSDEAD---CDAICLPNQFrCASGQC 1348
Cdd:NF041328  118 DlATDPLHcgaCGVACDPGES-CRGGAC 144
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
385-425 2.13e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.92  E-value: 2.13e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   385 GYVYWTDDEVRA-IRRAYLDGSGAQTLVNTEINDPDGIAVDW 425
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
712-776 2.52e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 47.59  E-value: 2.52e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119709832  712 VVEF-GLDYPEGMAVDWMGkNLYWADTGTNRieVARLD-GQFRQ-VLVWRDLDNPRSLALDPTkGYIY 776
Cdd:cd14952     3 VLPFtGLDGPGGVAVDAAG-NVYVADSGNNR--VLKLAaGSTTQtVLPFTGLYQPQGVAVDAA-GTVY 66
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
687-727 2.54e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.92  E-value: 2.54e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   687 NHIYWTDVSLK-TISRAFMNGSSVEHVVEFGLDYPEGMAVDW 727
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
731-770 1.13e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 1.13e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   731 NLYWADTGT-NRIEVARLDGQFRQVLVWRDLDNPRSLALDP 770
Cdd:pfam00058    2 RLYWTDSSLrASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
538-571 2.75e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.89  E-value: 2.75e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 119709832    538 RTLLEDKLPHIFGFTL--LGDFIYWTDWQRRSIERV 571
Cdd:smart00135    1 RTLLSSGLGHPNGLAVdwIEGRLYWTDWGLDVIEVA 36
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
718-794 3.28e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 44.58  E-value: 3.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  718 DYPEGMAVDwMGKNLYWADTGTNRIEVARLDGQF-RQvlVWR--DLDN----PRSLALDPtKGYIYWTE-WGGkpRIVRA 789
Cdd:cd14956    13 KDPRGIAVD-ADDNVYVADARNGRIQVFDKDGTFlRR--FGTtgDGPGqfgrPRGLAVDK-DGWLYVADyWGD--RIQVF 86

                  ....*
gi 119709832  790 FMDGT 794
Cdd:cd14956    87 TLTGE 91
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
970-1009 5.36e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.12  E-value: 5.36e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    970 ILPLHGLRNVKAIDYDPLDKFIYWVD-GRQNIKRAKDDGTQ 1009
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDwGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1060-1103 2.03e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.58  E-value: 2.03e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832   1060 VVLRGDRDKPRAIVVNAERGYLYFTNMqdRAAKIERAALDGTER 1103
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
773-813 3.24e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 36.75  E-value: 3.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   773 GYIYWTEWGGKPRIVRAFMDGTNCMTLV-DKVGRANDLTIDY 813
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFtDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
515-553 3.47e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 36.75  E-value: 3.47e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 119709832   515 GKLYWGDAKTD-KIEVINVDGTKRRTLLEDKLPHIFGFTL 553
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAV 40
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
230-264 8.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 35.66  E-value: 8.63e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 119709832    230 QKVVEGSLTHP--FALTLSGDTLYWTDWQTRSIHACN 264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVAN 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
207-245 8.93e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 35.60  E-value: 8.93e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 119709832   207 QKLYWADAKLSF-IHRANLDGSFRQKVVEGSLTHPFALTL 245
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAV 40
 
Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
163-203 3.12e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 3.12e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   163 GYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTID 203
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
299-336 3.41e-13

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 64.96  E-value: 3.41e-13
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832   299 CEEDNGGCSHLCLLSPSepFYTCACPTGVQLQDNGRTC 336
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG--GYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
408-450 1.92e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.00  E-value: 1.92e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    408 QTLVNTEINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSR 450
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1258-1295 1.35e-11

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 60.34  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 119709832  1258 TCSPDQFACATGEidCIPGAWRCDGFPECDDQSDEEGC 1295
Cdd:pfam00057    2 TCSPNEFQCGSGE--CIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
495-537 1.41e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 1.41e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    495 RVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEVINVDGTKR 537
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1336-1370 1.61e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 60.30  E-value: 1.61e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMC 1370
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1259-1295 3.35e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.14  E-value: 3.35e-11
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 119709832 1259 CSPDQFACATGEidCIPGAWRCDGFPECDDQSDEEGC 1295
Cdd:cd00112     1 CPPNEFRCANGR--CIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
451-494 4.43e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 59.15  E-value: 4.43e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    451 KILVSEDLDEPRAIALHPVMGLMYWTDWGeNPKIECANLDGQER 494
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1298-1332 4.76e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.76  E-value: 4.76e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 119709832 1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDEADC 1332
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
906-941 6.93e-11

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 58.41  E-value: 6.93e-11
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   906 CMHNNGQCGQLCLAIPGGHRCGCASHYTLDPSSRNC 941
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
710-752 7.58e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.38  E-value: 7.58e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    710 EHVVEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFR 752
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
143-186 1.01e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 1.01e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    143 KVLFWQDLDQPRAIALDPAHGYMYWTDWGeTPRIERAGMDGSTR 186
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
471-511 1.45e-10

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 57.55  E-value: 1.45e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   471 GLMYWTDWGENPKIECANLDGQERRVLVNASLGWPNGLALD 511
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
102-142 2.36e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.36e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    102 VVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 142
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
187-229 2.38e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 2.38e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832    187 KIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFR 229
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1258-1292 3.24e-10

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.49  E-value: 3.24e-10
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 119709832   1258 TCSPDQFACATGEidCIPGAWRCDGFPECDDQSDE 1292
Cdd:smart00192    1 TCPPGEFQCDNGR--CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1298-1332 1.31e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.95  E-value: 1.31e-09
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 119709832  1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDEADC 1332
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1336-1367 1.94e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 1.94e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 119709832   1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDE 1367
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
121-160 2.27e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 54.09  E-value: 2.27e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   121 KLYWTDSET-NRIEVANLNGTSRKVLFWQDLDQPRAIALDP 160
Cdd:pfam00058    2 RLYWTDSSLrASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1336-1370 6.33e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 53.02  E-value: 6.33e-09
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 119709832  1336 CLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMC 1370
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
605-640 8.60e-09

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 8.60e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 119709832   605 CADRNGGCSHLCFFTPHATRCGCPIGLELLSDMKTC 640
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
428-468 1.47e-08

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 51.78  E-value: 1.47e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   428 RNLYWTDTGTD-RIEVTRLNGTSRKILVSEDLDEPRAIALHP 468
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1298-1329 1.60e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.48  E-value: 1.60e-08
                            10        20        30
                    ....*....|....*....|....*....|..
gi 119709832   1298 CSAAQFPCARGQCVDLRLRCDGEADCQDRSDE 1329
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
753-796 7.96e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 7.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    753 QVLVWRDLDNPRSLALDPTKGYIYWTEWgGKPRIVRAFMDGTNC 796
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-GLDVIEVANLDGTNR 43
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
685-878 1.30e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 55.02  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  685 SNNHIYWTDVSLKTISR-----AFMNGSSVEHVVEFGLDYPEGMAVDwMGKNLYWADTGTNRIEVARLDGQFRQVLV--- 756
Cdd:cd05819    17 SSGNIYVADTGNNRIQVfdpdgNFITSFGSFGSGDGQFNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNFLASFGgsg 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  757 --WRDLDNPRSLALDPtKGYIYWTEWGGKpRIVRaFMDGTNCMTLVDKVGRAN-------DLTIDyADQRLYWTDLDTNM 827
Cdd:cd05819    96 dgDGEFNGPRGIAVDS-SGNIYVADTGNH-RIQK-FDPDGEFLTTFGSGGSGPgqfngptGVAVD-SDGNIYVADTGNHR 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  828 IE----SSNML---GQERVVIAdDLPHPFGLT-QYSDYIYWTDWNLHSIERADKTSGRN 878
Cdd:cd05819   172 IQvfdpDGNFLttfGSTGTGPG-QFNYPTGIAvDSDGNIYVADSGNNRVQVFDPDGAGF 229
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
349-562 1.33e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 54.31  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  349 RTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGIAVDWVAR 428
Cdd:COG3391     1 ALVASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  429 NLYWTDTGTDRIEVtrLNGTSRKILVSEDL-DEPRAIALHPVMGLMYWTDWGENpKIecANLDGQERRVLVNASLG-WPN 506
Cdd:COG3391    81 RLYVANSGSGRVSV--IDLATGKVVATIPVgGGPRGLAVDPDGGRLYVADSGNG-RV--SVIDTATGKVVATIPVGaGPH 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119709832  507 GLALDLQEGKLYWGDAKTDKI----EVINV-DGTKRRTLLEDKLPHIFGFTLLGDFIYWTD 562
Cdd:COG3391   156 GIAVDPDGKRLYVANSGSNTVsvivSVIDTaTGKVVATIPVGGGPVGVAVSPDGRRLYVAN 216
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
374-535 1.49e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 54.63  E-value: 1.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  374 HAIAIDYDpleGYVYWTDDEVRAIRR-----AYLDGSGAQTLVNTEINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGT 448
Cdd:cd05819    58 AGVAVDSD---GNLYVADTGNHRIQKfdpdgNFLASFGGSGDGDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGE 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  449 SRKIL-----VSEDLDEPRAIALHPVmGLMYWTDWGENpKIECANLDGQERRVL-----VNASLGWPNGLALDlQEGKLY 518
Cdd:cd05819   134 FLTTFgsggsGPGQFNGPTGVAVDSD-GNIYVADTGNH-RIQVFDPDGNFLTTFgstgtGPGQFNYPTGIAVD-SDGNIY 210
                         170
                  ....*....|....*..
gi 119709832  519 WGDAKTDKIEVINVDGT 535
Cdd:cd05819   211 VADSGNNRVQVFDPDGA 227
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
27-214 1.54e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 54.31  E-value: 1.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   27 APAAASPLLLFANRRDVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGA----VYWTDVSEEAIkqTYLNQTGAAVQNV 102
Cdd:COG3391    28 LGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGAdgrrLYVANSGSGRV--SVIDLATGKVVAT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  103 VISGlVSPDGLACDWVGKKLYWTDSETNRIEVanLNGTSRKVL-FWQDLDQPRAIALDPAHGYMYWTDWGeTPRIER--A 179
Cdd:COG3391   106 IPVG-GGPRGLAVDPDGGRLYVADSGNGRVSV--IDTATGKVVaTIPVGAGPHGIAVDPDGKRLYVANSG-SNTVSVivS 181
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 119709832  180 GMDGSTRKII--VDSDIYwPNGLTIDLEEQKLYWADA 214
Cdd:COG3391   182 VIDTATGKVVatIPVGGG-PVGVAVSPDGRRLYVANR 217
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
648-782 2.11e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 53.93  E-value: 2.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  648 VFTSRAAIHRIS-LETNNNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVVEFGlDYPEGMAVD 726
Cdd:COG3391    82 LYVANSGSGRVSvIDLATGKVVATIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVG-AGPHGIAVD 160
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  727 WMGKNLYWADTGTNRIE--VARLDGQFRQVL-VWRDLDNPRSLALDPTKGYIYWTEWGG 782
Cdd:COG3391   161 PDGKRLYVANSGSNTVSviVSVIDTATGKVVaTIPVGGGPVGVAVSPDGRRLYVANRGS 219
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
366-406 2.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 2.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    366 VLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSG 406
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1104-1146 1.12e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 46.83  E-value: 1.12e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 119709832   1104 EVLFTTGLIRPVALVVDNTLGKLFWVDADLKRIESCDLSGANR 1146
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
37-169 1.28e-06

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 51.44  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   37 FANRRDVRLvdAGGVKLESTIVVSGLEDAA--AVDFQfskGAVYWTD-VSEEAIKQtylnQTGAAVQNVV-ISGLVSPDG 112
Cdd:cd14952    70 FGNNRVLKL--AAGSTTQTVLPFTGLNDPTgvAVDAA---GNVYVADtGNNRVLKL----AAGSNTQTVLpFTGLSNPDG 140
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 119709832  113 LACDWVGKkLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAhGYMYWTD 169
Cdd:cd14952   141 VAVDGAGN-VYVTDTGNNRVLKLAAGSTTQTVLPFTGLNSPSGVAVDTA-GNVYVTD 195
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1217-1253 1.29e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.47  E-value: 1.29e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 119709832  1217 CARDNGGCSHICIAKGDGTpRCSCPVHLVLLQNLLTC 1253
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGY-TCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
799-838 2.77e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 45.67  E-value: 2.77e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 119709832    799 LVDKVGRANDLTIDYADQRLYWTDLDTNMIESSNMLGQER 838
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
C_rich_MXAN6577 NF041328
MXAN_6577-like cysteine-rich domain;
1253-1348 3.73e-06

MXAN_6577-like cysteine-rich domain;


Pssm-ID: 469225 [Multi-domain]  Cd Length: 145  Bit Score: 48.22  E-value: 3.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832 1253 CGEppTCSPDQfACATGEIDCIPGAWRCDGfpEC-DDQSDEEGCPVCSAAQFP---CARGQCVDL----RLRCDGEadCQ 1324
Cdd:NF041328   45 CGV--ACGAGQ-TCVAGACGCGPGTVACGG--ACvDTASDPAHCGACGAACAPgqvCEGGACREAcsegLTRCGGA--CV 117
                          90       100
                  ....*....|....*....|....*...
gi 119709832 1325 D-RSDEAD---CDAICLPNQFrCASGQC 1348
Cdd:NF041328  118 DlATDPLHcgaCGVACDPGES-CRGGAC 144
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
669-709 5.67e-06

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 44.51  E-value: 5.67e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    669 IPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSV 709
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
337-534 5.70e-06

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 49.31  E-value: 5.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  337 KAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTL--VNTE 414
Cdd:COG3391    19 AALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVsvIDLA 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  415 IN----------DPDGIAVDWVARNLYWTDTGTDRieVTRLNGTSRKILVSEDL-DEPRAIALHPVMGLMYWTDWGENpK 483
Cdd:COG3391    99 TGkvvatipvggGPRGLAVDPDGGRLYVADSGNGR--VSVIDTATGKVVATIPVgAGPHGIAVDPDGKRLYVANSGSN-T 175
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 119709832  484 IEC--ANLDGQERRVLVNASLG-WPNGLALDLQEGKLY-------WGDAKTDKIEVINVDG 534
Cdd:COG3391   176 VSVivSVIDTATGKVVATIPVGgGPVGVAVSPDGRRLYvanrgsnTSNGGSNTVSVIDLAT 236
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
376-534 6.66e-06

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 49.51  E-value: 6.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  376 IAIDYDPlEGYVYWTDDEVRAIRRAYLDGSGAQTLVNT-EINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILV 454
Cdd:cd14962    60 IGVAIDA-NGNLYVSDAELGKVFVFDRDGKFLRAIGAGaLFKRPTGIAVDPAGKRLYVVDTLAHKVKVFDLDGRLLFDIG 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  455 S-----EDLDEPRAIALHPvMGLMYWTDWGeNPKIECANLDGQERRV-----LVNASLGWPNGLALDlQEGKLYWGDAKT 524
Cdd:cd14962   139 KrgsgpGEFNLPTDLAVDR-DGNLYVTDTM-NFRVQIFDADGKFLRSfgergDGPGSFARPKGIAVD-SEGNIYVVDAAF 215
                         170
                  ....*....|
gi 119709832  525 DKIEVINVDG 534
Cdd:cd14962   216 DNVQIFNPEG 225
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
838-879 1.02e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 43.74  E-value: 1.02e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832    838 RVVIADDLPHPFGLT--QYSDYIYWTDWNLHSIERADKTsGRNR 879
Cdd:smart00135    1 RTLLSSGLGHPNGLAvdWIEGRLYWTDWGLDVIEVANLD-GTNR 43
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
416-539 1.96e-05

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 48.06  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  416 NDPDGIAVDWvaRNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDE-----PRAIALHPvMGLMYWTDWGeNPKIECANLD 490
Cdd:cd14963    10 NKPMGVAVSD--GRIYVADTNNHRVQVFDYEGKFKKSFGGPGTGPgefkyPYGIAVDS-DGNIYVADLY-NGRIQVFDPD 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 119709832  491 GQERRVLVNAS----LGWPNGLALDlqEGKLYWGDAKTDKIEVINVDGTKRRT 539
Cdd:cd14963    86 GKFLKYFPEKKdrvkLISPAGLAID--DGKLYVSDVKKHKVIVFDLEGKLLLE 136
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
385-425 2.13e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.92  E-value: 2.13e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   385 GYVYWTDDEVRA-IRRAYLDGSGAQTLVNTEINDPDGIAVDW 425
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
712-776 2.52e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 47.59  E-value: 2.52e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119709832  712 VVEF-GLDYPEGMAVDWMGkNLYWADTGTNRieVARLD-GQFRQ-VLVWRDLDNPRSLALDPTkGYIY 776
Cdd:cd14952     3 VLPFtGLDGPGGVAVDAAG-NVYVADSGNNR--VLKLAaGSTTQtVLPFTGLYQPQGVAVDAA-GTVY 66
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
687-727 2.54e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.92  E-value: 2.54e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   687 NHIYWTDVSLK-TISRAFMNGSSVEHVVEFGLDYPEGMAVDW 727
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
683-828 3.18e-05

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 47.67  E-value: 3.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  683 DVSNNHIYWTDVSLKTISRAFMNGssvEHVVEFG--------LDYPEGMAVDWMGkNLYWADTGTNRIEVARLDGQFRQV 754
Cdd:cd14963   108 AIDDGKLYVSDVKKHKVIVFDLEG---KLLLEFGkpgsepgeLSYPNGIAVDEDG-NIYVADSGNGRIQVFDKNGKFIKE 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  755 LVWRDLD-----NPRSLALDPtKGYIY-----------WTEWGGKPRIVRAFMDGTNCMTLvdkvgrANDLTIDyADQRL 818
Cdd:cd14963   184 LNGSPDGksgfvNPRGIAVDP-DGNLYvvdnlshrvyvFDEQGKELFTFGGRGKDDGQFNL------PNGLFID-DDGRL 255
                         170
                  ....*....|
gi 119709832  819 YWTDLDTNMI 828
Cdd:cd14963   256 YVTDRENNRV 265
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
729-828 3.48e-05

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 47.00  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  729 GKNLYWADTGTNRIEVARLDgQFRQVLVWRDLDNPRSLALDPTKGYIYWTEWGGKpRIVRafMDGTNcMTLVDKV---GR 805
Cdd:COG3391    79 GRRLYVANSGSGRVSVIDLA-TGKVVATIPVGGGPRGLAVDPDGGRLYVADSGNG-RVSV--IDTAT-GKVVATIpvgAG 153
                          90       100
                  ....*....|....*....|...
gi 119709832  806 ANDLTIDYADQRLYWTDLDTNMI 828
Cdd:COG3391   154 PHGIAVDPDGKRLYVANSGSNTV 176
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
407-568 3.98e-05

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 47.29  E-value: 3.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  407 AQTLVNTEINDPDGIAVDwvARNLYWTDTGTDRIEVTRLNGTSRKILVSE-----DLDEPRAIALHPvMGLMYWTDWGeN 481
Cdd:cd14963    93 PEKKDRVKLISPAGLAID--DGKLYVSDVKKHKVIVFDLEGKLLLEFGKPgsepgELSYPNGIAVDE-DGNIYVADSG-N 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  482 PKIECANLDGQERRVLVNASLGW-----PNGLALDlQEGKLYWGDAKTDKIEVINVDGTKRRTL----LED---KLPHif 549
Cdd:cd14963   169 GRIQVFDKNGKFIKELNGSPDGKsgfvnPRGIAVD-PDGNLYVVDNLSHRVYVFDEQGKELFTFggrgKDDgqfNLPN-- 245
                         170       180
                  ....*....|....*....|
gi 119709832  550 GFTLLGD-FIYWTDWQRRSI 568
Cdd:cd14963   246 GLFIDDDgRLYVTDRENNRV 265
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
664-788 4.31e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 46.82  E-value: 4.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  664 NNDVAIPLTGVKEASALDFDVSNNhIYWTD------VSLKTisrafmnGSSVEHVVEF-GLDYPEGMAVDWMGkNLYWAD 736
Cdd:cd14952    83 TTQTVLPFTGLNDPTGVAVDAAGN-VYVADtgnnrvLKLAA-------GSNTQTVLPFtGLSNPDGVAVDGAG-NVYVTD 153
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 119709832  737 TGTNRieVARLD-GQFRQ-VLVWRDLDNPRSLALDpTKGYIYWTEwGGKPRIVR 788
Cdd:cd14952   154 TGNNR--VLKLAaGSTTQtVLPFTGLNSPSGVAVD-TAGNVYVTD-HGNNRVLK 203
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
654-828 4.63e-05

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 46.94  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  654 AIHRISLETNNND-VAIPlTGVKEASALDFDvSNNHIYWTDVSLKTISR---AfmNGSSVEHVVEFGLDYPEGMAVDWMG 729
Cdd:COG4257    81 RIGRIDPKTGEITtFALP-GGGSNPHGIAFD-PDGNLWFTDQGGNRIGRldpA--TGEVTEFPLPTGGAGPYGIAVDPDG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  730 kNLYWADTGTNRIevARLD---GQFRQVLVWRDLDNPRSLALDPtKGYIYWTEWGGkpRIVRAFMDGTNCMT---LVDKV 803
Cdd:COG4257   157 -NLWVTDFGANAI--GRIDpdtGTLTEYALPTPGAGPRGLAVDP-DGNLWVADTGS--GRIGRFDPKTGTVTeypLPGGG 230
                         170       180
                  ....*....|....*....|....*
gi 119709832  804 GRANDLTIDYADqRLYWTDLDTNMI 828
Cdd:COG4257   231 ARPYGVAVDGDG-RVWFAESGANRI 254
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
376-535 7.59e-05

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 46.51  E-value: 7.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  376 IAIDYDpleGYVYWTDDEVRAIRRAYLDGSGAQTL-----VNTEINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGT-- 448
Cdd:cd14956    65 LAVDKD---GWLYVADYWGDRIQVFTLTGELQTIGgssgsGPGQFNAPRGVAVD-ADGNLYVADFGNQRIQKFDPDGSfl 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  449 ----SRKILVSEdLDEPRAIALHPVmGLMYWTDwGENPKIECANLDGQERRVL--VNASLGW---PNGLALDlQEGKLYW 519
Cdd:cd14956   141 rqwgGTGIEPGS-FNYPRGVAVDPD-GTLYVAD-TYNDRIQVFDNDGAFLRKWggRGTGPGQfnyPYGIAID-PDGNVFV 216
                         170
                  ....*....|....*.
gi 119709832  520 GDAKTDKIEVINVDGT 535
Cdd:cd14956   217 ADFGNNRIQKFTADGT 232
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
731-770 1.13e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 1.13e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 119709832   731 NLYWADTGT-NRIEVARLDGQFRQVLVWRDLDNPRSLALDP 770
Cdd:pfam00058    2 RLYWTDSSLrASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
718-870 1.38e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 45.74  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  718 DYPEGMAVDWMGkNLYWADTGTNRIEVARLDGQFrqVLVWRD-------LDNPRSLALDPtKGYIYWTEwGGKPRIVRAF 790
Cdd:cd14956   107 NAPRGVAVDADG-NLYVADFGNQRIQKFDPDGSF--LRQWGGtgiepgsFNYPRGVAVDP-DGTLYVAD-TYNDRIQVFD 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  791 MDGtncmTLVDKVGR----------ANDLTIDyADQRLYWTDLDTNMIESSNMLGQERVVI--ADDLPHPF----GLTQY 854
Cdd:cd14956   182 NDG----AFLRKWGGrgtgpgqfnyPYGIAID-PDGNVFVADFGNNRIQKFTADGTFLTSWgsPGTGPGQFknpwGVVVD 256
                         170
                  ....*....|....*..
gi 119709832  855 SD-YIYWTDWNLHSIER 870
Cdd:cd14956   257 ADgTVYVADSNNNRVQR 273
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
35-171 1.66e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 45.07  E-value: 1.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   35 LLFANRRD--VRLVDAGGVKLESTIVVSGleDAAAVDFQFSKGAVYWTDVSEEAIkQTYLNQTGAAVQnvVISGLVSPDG 112
Cdd:COG3391    82 LYVANSGSgrVSVIDLATGKVVATIPVGG--GPRGLAVDPDGGRLYVADSGNGRV-SVIDTATGKVVA--TIPVGAGPHG 156
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119709832  113 LACDWVGKKLYWTDSETNRIE--VANLNGTSRKVL-FWQDLDQPRAIALDPAHGYMYWTDWG 171
Cdd:COG3391   157 IAVDPDGKRLYVANSGSNTVSviVSVIDTATGKVVaTIPVGGGPVGVAVSPDGRRLYVANRG 218
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
380-540 2.03e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.88  E-value: 2.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  380 YDPlEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEiNDPDGIAVD-----WVARN---LYWTDTGTDRIEV--------- 442
Cdd:COG3386    15 WDP-DGRLYWVDIPGGRIHRYDPDGGAVEVFAEPS-GRPNGLAFDpdgrlLVADHgrgLVRFDPADGEVTVladeygkpl 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  443 TRLN------------------------------GTSRKILvsEDLDEPRAIALHPVMGLMYWTDWGENpKIECANLDGQ 492
Cdd:COG3386    93 NRPNdgvvdpdgrlyftdmgeylptgalyrvdpdGSLRVLA--DGLTFPNGIAFSPDGRTLYVADTGAG-RIYRFDLDAD 169
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 119709832  493 ----ERRVLVNASL--GWPNGLALDlQEGKLYWGDAKTDKIEVINVDGTKRRTL 540
Cdd:COG3386   170 gtlgNRRVFADLPDgpGGPDGLAVD-ADGNLWVALWGGGGVVRFDPDGELLGRI 222
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
75-264 2.70e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.50  E-value: 2.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   75 GAVYWTDVSEEAIkQTYLNQTGAAVQNVVISGLVS-----PDG--LACDwVGKKLYWTDSETNRIEV-ANLNGTsrkvlf 146
Cdd:COG3386    19 GRLYWVDIPGGRI-HRYDPDGGAVEVFAEPSGRPNglafdPDGrlLVAD-HGRGLVRFDPADGEVTVlADEYGK------ 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  147 wqDLDQPRAIALDPaHGYMYWTD---WGETPRIERAGMDGSTRkiIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRAN 223
Cdd:COG3386    91 --PLNRPNDGVVDP-DGRLYFTDmgeYLPTGALYRVDPDGSLR--VLADGLTFPNGIAFSPDGRTLYVADTGAGRIYRFD 165
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 119709832  224 LDGSfrqkvveGSLTHP--FALTLSGD------------TLYWTDWQTRSIHACN 264
Cdd:COG3386   166 LDAD-------GTLGNRrvFADLPDGPggpdglavdadgNLWVALWGGGGVVRFD 213
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
538-571 2.75e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.89  E-value: 2.75e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 119709832    538 RTLLEDKLPHIFGFTL--LGDFIYWTDWQRRSIERV 571
Cdd:smart00135    1 RTLLSSGLGHPNGLAVdwIEGRLYWTDWGLDVIEVA 36
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
712-824 2.78e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 44.50  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  712 VVEFGLDYPEGMAVDWMGkNLYWADTGTNRIevARLDGQFRQVLVWRDLDN-PRSLALDPtKGYIYWTEwgGKPRIVRAF 790
Cdd:COG3386     2 LADAGFRLGEGPVWDPDG-RLYWVDIPGGRI--HRYDPDGGAVEVFAEPSGrPNGLAFDP-DGRLLVAD--HGRGLVRFD 75
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 119709832  791 MDGTNCMTLVDKVG----RANDLTIDyADQRLYWTDLD 824
Cdd:COG3386    76 PADGEVTVLADEYGkplnRPNDGVVD-PDGRLYFTDMG 112
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
412-788 2.85e-04

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 44.62  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  412 NTEINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGTsrkilvsedldepraialhpvmglmYWTDWGENpkiecANLDG 491
Cdd:cd05819     4 PGELNNPQGIAVD-SSGNIYVADTGNNRIQVFDPDGN-------------------------FITSFGSF-----GSGDG 52
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  492 QerrvlvnasLGWPNGLALDlQEGKLYWGDAKTDKIEVINVDGTKRRTLledklpHIFGFTLLGDF------------IY 559
Cdd:cd05819    53 Q---------FNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNFLASF------GGSGDGDGEFNgprgiavdssgnIY 116
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  560 WTDWQRRsieRVHKVKASRDVIidqlpdlmglkavnvaKVVGTNpcadrNGGCSHLCFftphatrcgcPIGLellsdmkt 639
Cdd:cd05819   117 VADTGNH---RIQKFDPDGEFL----------------TTFGSG-----GSGPGQFNG----------PTGV-------- 154
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  640 civpeaflvftsraAIHRisletnNNDVAIpltgvkeasaLDFDvsNNHIYWTDVSLKTISRAfmnGSSVEHVVEFglDY 719
Cdd:cd05819   155 --------------AVDS------DGNIYV----------ADTG--NHRIQVFDPDGNFLTTF---GSTGTGPGQF--NY 197
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119709832  720 PEGMAVDWMGkNLYWADTGTNRIEVARLDGQFRQVL-----VWRDLDNPRSLALDPtKGYIYWTEWGGkPRIVR 788
Cdd:cd05819   198 PTGIAVDSDG-NIYVADSGNNRVQVFDPDGAGFGGNgnflgSDGQFNRPSGLAVDS-DGNLYVADTGN-NRIQV 268
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
718-794 3.28e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 44.58  E-value: 3.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  718 DYPEGMAVDwMGKNLYWADTGTNRIEVARLDGQF-RQvlVWR--DLDN----PRSLALDPtKGYIYWTE-WGGkpRIVRA 789
Cdd:cd14956    13 KDPRGIAVD-ADDNVYVADARNGRIQVFDKDGTFlRR--FGTtgDGPGqfgrPRGLAVDK-DGWLYVADyWGD--RIQVF 86

                  ....*
gi 119709832  790 FMDGT 794
Cdd:cd14956    87 TLTGE 91
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
706-770 3.64e-04

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 44.12  E-value: 3.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119709832  706 GSSVEHVVEF-GLDYPEGMAVDWMGkNLYWADTGTNRieVARLDGQ--FRQVLVWRDLDNPRSLALDP 770
Cdd:cd14952    81 GSTTQTVLPFtGLNDPTGVAVDAAG-NVYVADTGNNR--VLKLAAGsnTQTVLPFTGLSNPDGVAVDG 145
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
67-289 4.14e-04

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 44.23  E-value: 4.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832   67 AVDfqfSKGAVYWTDVSEEAIKQtyLNQTGAAVQNVVISG-----LVSPDGLACDwVGKKLYWTDSETNRIEVANLNGTS 141
Cdd:cd05819    14 AVD---SSGNIYVADTGNNRIQV--FDPDGNFITSFGSFGsgdgqFNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNF 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  142 RKV-----LFWQDLDQPRAIALDPAhGYMYWTDWGETpRIERAGMDGSTRKII-----VDSDIYWPNGLTIDlEEQKLYW 211
Cdd:cd05819    88 LASfggsgDGDGEFNGPRGIAVDSS-GNIYVADTGNH-RIQKFDPDGEFLTTFgsggsGPGQFNGPTGVAVD-SDGNIYV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  212 ADAKLSFIHRANLDGSF-----RQKVVEGSLTHPFALTLSGD-TLYWTDWQTRSIH-----ACNKRTGGKRKEILSALYS 280
Cdd:cd05819   165 ADTGNHRIQVFDPDGNFlttfgSTGTGPGQFNYPTGIAVDSDgNIYVADSGNNRVQvfdpdGAGFGGNGNFLGSDGQFNR 244

                  ....*....
gi 119709832  281 PMDIQVLSQ 289
Cdd:cd05819   245 PSGLAVDSD 253
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
414-530 4.31e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 43.82  E-value: 4.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  414 EINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDE-----PRAIALHPvMGLMYWTDWGENpKIECAN 488
Cdd:cd14963   146 ELSYPNGIAVD-EDGNIYVADSGNGRIQVFDKNGKFIKELNGSPDGKsgfvnPRGIAVDP-DGNLYVVDNLSH-RVYVFD 222
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 119709832  489 LDGQERRVL-----VNASLGWPNGLALDlQEGKLYWGDAKTDKIEVI 530
Cdd:cd14963   223 EQGKELFTFggrgkDDGQFNLPNGLFID-DDGRLYVTDRENNRVAVY 268
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
103-254 4.38e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 44.12  E-value: 4.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  103 VISGLVSPDGLACDWVGKkLYWTDSETNRIEVANLNgtSRKVLFW-----QDLDQPRAIALDPAhGYMYWTDwGETPRIE 177
Cdd:cd14962     7 PKEALTRPYGVAADGRGR-IYVADTGRGAVFVFDLP--NGKVFVIgnagpNRFVSPIGVAIDAN-GNLYVSD-AELGKVF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  178 RAGMDGS-TRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSF-----RQKVVEGSLTHPFALTLSGD-TL 250
Cdd:cd14962    82 VFDRDGKfLRAIGAGALFKRPTGIAVDPAGKRLYVVDTLAHKVKVFDLDGRLlfdigKRGSGPGEFNLPTDLAVDRDgNL 161

                  ....
gi 119709832  251 YWTD 254
Cdd:cd14962   162 YVTD 165
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
970-1009 5.36e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 39.12  E-value: 5.36e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 119709832    970 ILPLHGLRNVKAIDYDPLDKFIYWVD-GRQNIKRAKDDGTQ 1009
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDwGLDVIEVANLDGTN 42
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
663-742 8.34e-04

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 42.97  E-value: 8.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  663 NNNDVAIPLTGVKEASALDFDVSNNhIYWTDVSLKTISRaFMNGSSVEHVVEF-GLDYPEGMAVDWMGkNLYWADTGTNR 741
Cdd:cd14952   166 STTQTVLPFTGLNSPSGVAVDTAGN-VYVTDHGNNRVLK-LAAGSTTPTVLPFtGLNGPLGVAVDAAG-NVYVADRGNDR 242

                  .
gi 119709832  742 I 742
Cdd:cd14952   243 V 243
NHL_like_4 cd14955
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ...
718-776 8.97e-04

Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271325 [Multi-domain]  Cd Length: 279  Bit Score: 42.95  E-value: 8.97e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119709832  718 DYPEGMAVDWMGkNLYWADTGTNRIEVARLDGQFrqVLVW-------RDLDNPRSLALDPTkGYIY 776
Cdd:cd14955    16 NSPSGIAVDSAG-NVYVADTGNNRIQKFDSTGTF--LTKWgssgsgdGQFYSPTGIAVDSD-GNVY 77
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
416-535 1.21e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 42.65  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  416 NDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGTSRKILVS-----EDLDEPRAIALHPvMGLMYWTDwGENPKIECANLD 490
Cdd:cd14956    13 KDPRGIAVD-ADDNVYVADARNGRIQVFDKDGTFLRRFGTtgdgpGQFGRPRGLAVDK-DGWLYVAD-YWGDRIQVFTLT 89
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 119709832  491 GQERRVL-----VNASLGWPNGLALDLQeGKLYWGDAKTDKIEVINVDGT 535
Cdd:cd14956    90 GELQTIGgssgsGPGQFNAPRGVAVDAD-GNLYVADFGNQRIQKFDPDGS 138
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
374-440 1.39e-03

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 42.19  E-value: 1.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119709832  374 HAIAIDydpLEGYVYWTDDEVRAIRRayLD-GSGAQT-LVNTEINDPDGIAVDwVARNLYWTDTGTDRI 440
Cdd:cd14952   181 SGVAVD---TAGNVYVTDHGNNRVLK--LAaGSTTPTvLPFTGLNGPLGVAVD-AAGNVYVADRGNDRV 243
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
374-481 1.61e-03

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 42.19  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  374 HAIAIDYDpleGYVYWTD-DEVRAIRRAylDGSGAQT-LVNTEINDPDGIAVDwVARNLYWTDTGTDRIEVTRLNGTSRK 451
Cdd:cd14952    97 TGVAVDAA---GNVYVADtGNNRVLKLA--AGSNTQTvLPFTGLSNPDGVAVD-GAGNVYVTDTGNNRVLKLAAGSTTQT 170
                          90       100       110
                  ....*....|....*....|....*....|
gi 119709832  452 ILVSEDLDEPRAIALHPVmGLMYWTDWGEN 481
Cdd:cd14952   171 VLPFTGLNSPSGVAVDTA-GNVYVTDHGNN 199
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
646-788 1.98e-03

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 41.80  E-value: 1.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  646 FLVFTSRAAIHRISLETNNNDVAIPLTGVKEASA--LDFDvSNNHIYWTDVSLKTISRAFM----NGSSveHVVEFGLDY 719
Cdd:COG3386    62 LLVADHGRGLVRFDPADGEVTVLADEYGKPLNRPndGVVD-PDGRLYFTDMGEYLPTGALYrvdpDGSL--RVLADGLTF 138
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119709832  720 PEGMAVDWMGKNLYWADTGTNRIEVARL--DGQFRQVLVWRDLD----NPRSLALDpTKGYIYWTEWGGKpRIVR 788
Cdd:COG3386   139 PNGIAFSPDGRTLYVADTGAGRIYRFDLdaDGTLGNRRVFADLPdgpgGPDGLAVD-ADGNLWVALWGGG-GVVR 211
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1060-1103 2.03e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.58  E-value: 2.03e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 119709832   1060 VVLRGDRDKPRAIVVNAERGYLYFTNMqdRAAKIERAALDGTER 1103
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
NHL_TRIM71_like cd14954
NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins; ...
717-776 2.36e-03

NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins; The E3 ubiquitin-protein ligase TRIM71 (LIN-41) is a RING-finger domain containing protein that has been associated with a variety of activities. The NHL repeat domain appears responsible for targeting TRIM71 to mRNAs, and TRIM71 appears responsible for translational repression and mRNA decay. Together with BRAT, TRIM71 may be part of a family of mRNA repressors that regulate proliferation and differentiation. TRIM has been shown to negatively regulate stability of Lin28B, which inhibits the pre-let-7 miRNA precursor from maturing by recruiting the terminal uriyltransferase TUT4. This family also contains the Caenorhabditis elegans NHL repeat containing 1 (NHL-1), a RING-finger-containing protein that was shown to interact with E2 ubiquitin conjugating enzymes in two-hybrid screens. Its domain architecture resembles that of the E3 ubiquitin protein ligases TRIM2, TRIM32, and TRIM71. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271324 [Multi-domain]  Cd Length: 285  Bit Score: 41.76  E-value: 2.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119709832  717 LDYPEGMAVDWMGkNLYWADTGTNRIEVARLDGQF-----RQVLVWRDLDNPRSLALDPTkGYIY 776
Cdd:cd14954   117 FNYPWGVAVDSEG-RIYVSDTRNHRVQVFDSDGQFirkfgFEGAGPGQLDSPRGVAVNPD-GNIV 179
NHL_like_1 cd14953
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ...
399-535 2.54e-03

Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271323 [Multi-domain]  Cd Length: 323  Bit Score: 41.75  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  399 RAYLDGSGAqtlVNTEINDPDGIAVDwVARNLYWTDTGTDRI-------EVTRLNGTSR------KILVSEDLDEPRAIA 465
Cdd:cd14953   118 AGFSDDGGA---TAAQFNYPTGVAVD-AAGNLYVADTGNHRIrkitpdgVVTTVAGTGGagyagdGPATAAQFNNPTGVA 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  466 LHPvMGLMYWTDWGeNPKIECANLDGQERRVL-------------VNASLGWPNGLALDlQEGKLYWGDAKTDKIEVINV 532
Cdd:cd14953   194 VDA-AGNLYVADRG-NHRIRKITPDGVVTTVAgtgtagfsgdggaTAAQLNNPTGVAVD-AAGNLYVADSGNHRIRKITP 270

                  ...
gi 119709832  533 DGT 535
Cdd:cd14953   271 AGV 273
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
773-813 3.24e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 36.75  E-value: 3.24e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   773 GYIYWTEWGGKPRIVRAFMDGTNCMTLV-DKVGRANDLTIDY 813
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFtDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
515-553 3.47e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 36.75  E-value: 3.47e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 119709832   515 GKLYWGDAKTD-KIEVINVDGTKRRTLLEDKLPHIFGFTL 553
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAV 40
NHL_like_4 cd14955
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ...
717-794 4.42e-03

Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271325 [Multi-domain]  Cd Length: 279  Bit Score: 41.02  E-value: 4.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  717 LDYPEGMAVDWMGkNLYWADTGTNRIE--------VARL------DGQFrqvlvwrdlDNPRSLALDPTkGYIYWTEWGG 782
Cdd:cd14955    62 FYSPTGIAVDSDG-NVYVADTGNHRIQkfdstgtfLTKWgssgsgDGQF---------NSPSGIAVDSA-GNVYVTDSGN 130
                          90
                  ....*....|..
gi 119709832  783 kPRIVRAFMDGT 794
Cdd:cd14955   131 -NRIQKFDSSGT 141
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
108-268 6.18e-03

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 40.39  E-value: 6.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  108 VSPDGlacdwvgkKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAhGYMYWTDWGETpRIERAGM-DGSTR 186
Cdd:COG4257    24 VDPDG--------AVWFTDQGGGRIGRLDPATGEFTEYPLGGGSGPHGIAVDPD-GNLWFTDNGNN-RIGRIDPkTGEIT 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  187 KIIVDSDIYWPNGLTIDlEEQKLYWADAKLSFIHRANLD-GSFRQKVVEGSLTHPFALTLSGD-TLYWTDWQTRSIHACN 264
Cdd:COG4257    94 TFALPGGGSNPHGIAFD-PDGNLWFTDQGGNRIGRLDPAtGEVTEFPLPTGGAGPYGIAVDPDgNLWVTDFGANAIGRID 172

                  ....
gi 119709832  265 KRTG 268
Cdd:COG4257   173 PDTG 176
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
856-896 6.98e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 35.98  E-value: 6.98e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 119709832   856 DYIYWTDWNLH-SIERADKTSGRNRTLIQGHLDFVMDILVFH 896
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_like_2 cd14957
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ...
368-535 7.36e-03

Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271327 [Multi-domain]  Cd Length: 280  Bit Score: 40.33  E-value: 7.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  368 QVDDIRHaIAIDYDpleGYVYWTDDEVRAIR-------RAYLDGSGAQTlvNTEINDPDGIAVDwVARNLYWTDTGTDRI 440
Cdd:cd14957    16 QFNTPRG-IAVDSA---GNIYVADTGNNRIQvftssgvYSYSIGSGGTG--SGQFNSPYGIAVD-SNGNIYVADTDNNRI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119709832  441 EV-TRLNGTSRKI----LVSEDLDEPRAIALHPvMGLMYWTDwGENPKIECANLDGQERRVLVNASLGW-----PNGLAL 510
Cdd:cd14957    89 QVfNSSGVYQYSIgtggSGDGQFNGPYGIAVDS-NGNIYVAD-TGNHRIQVFTSSGTFSYSIGSGGTGPgqfngPQGIAV 166
                         170       180
                  ....*....|....*....|....*
gi 119709832  511 DlQEGKLYWGDAKTDKIEVINVDGT 535
Cdd:cd14957   167 D-SDGNIYVADTGNHRIQVFTSSGT 190
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
230-264 8.63e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 35.66  E-value: 8.63e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 119709832    230 QKVVEGSLTHP--FALTLSGDTLYWTDWQTRSIHACN 264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVAN 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
207-245 8.93e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 35.60  E-value: 8.93e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 119709832   207 QKLYWADAKLSF-IHRANLDGSFRQKVVEGSLTHPFALTL 245
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAV 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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