NCBI Conserved Domain Search

Conserved domains on [gi|4758792|ref|NP_004544|]

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NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial precursor [Homo sapiens]

Protein Classification

zinc-finger domain-containing protein( domain architecture ID 10563207)

zinc-finger domain-containing protein similar to NADH:ubiquinone oxidoreductase subunit S6 (NDUFS6), an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to not be involved in catalysis; it harbors a Zn-binding site and is essential for biogenesis of mitochondrial complex I

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

82-119

4.53e-16

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 66.40 E-value: 4.53e-16

                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 4758792     82 TRVIACDGGGGALGHPKVYINLDKEtKTGTCGYCGLQF 119
Cdd:pfam10276   1 GRRVACDGGGGALGHPRVYINLDKP-GPVECPYCGLRF 37

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

82-119

4.53e-16

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 66.40 E-value: 4.53e-16

                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 4758792     82 TRVIACDGGGGALGHPKVYINLDKEtKTGTCGYCGLQF 119
Cdd:pfam10276   1 GRRVACDGGGGALGHPRVYINLDKP-GPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

75-120

1.49e-11

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 55.26 E-value: 1.49e-11

                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 4758792   75 QPVSEVETRVIACDGGGGALGHPKVYINLDkETKTGTCGYCGLQFR 120
Cdd:COG4391   3 PETIEVTAKDVSCPGPEGWLGHPRVFLDIG-ETGEVECPYCGTLYV 47

Name

Accession

Description

Interval

E-value

zf-CHCC

pfam10276

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...

82-119

4.53e-16

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.

Pssm-ID: 463041 Cd Length: 37 Bit Score: 66.40 E-value: 4.53e-16

                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 4758792     82 TRVIACDGGGGALGHPKVYINLDKEtKTGTCGYCGLQF 119
Cdd:pfam10276   1 GRRVACDGGGGALGHPRVYINLDKP-GPVECPYCGLRF 37

COG4391

Uncharacterized protein, contains Zn-finger domain [Function unknown];

75-120

1.49e-11

Uncharacterized protein, contains Zn-finger domain [Function unknown];

Pssm-ID: 443517 Cd Length: 54 Bit Score: 55.26 E-value: 1.49e-11

                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 4758792   75 QPVSEVETRVIACDGGGGALGHPKVYINLDkETKTGTCGYCGLQFR 120
Cdd:COG4391   3 PETIEVTAKDVSCPGPEGWLGHPRVFLDIG-ETGEVECPYCGTLYV 47

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01