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Conserved domains on  [gi|6321743|ref|NP_011819|]
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DUP240 family protein [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUP super family cl02924
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


The actual alignment was detected with superfamily member pfam00674:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6321743    103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6321743    103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6321743    103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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