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Conserved domains on  [gi|7525050|ref|NP_051076|]
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photosystem II protein V (chloroplast) [Arabidopsis thaliana]

Protein Classification

cytochrome b559 subunit alpha( domain architecture ID 11414038)

cytochrome b559 subunit alpha is b-type cytochrome that is tightly associated with the reaction center of photosystem II (PSII)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbE CHL00064
photosystem II protein V
 1-83 4.54e-56

photosystem II protein V


:

Pssm-ID: 177004  Cd Length: 83  Bit Score: 167.22  E-value: 4.54e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050    1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:CHL00064  1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQEIPLITGRFDPLEQLDEFT 80


                ...
gi 7525050   81 RSF 83
Cdd:CHL00064 81 RSF 83
 
Name Accession Description Interval E-value
psbE CHL00064
photosystem II protein V
 1-83 4.54e-56

photosystem II protein V


Pssm-ID: 177004  Cd Length: 83  Bit Score: 167.22  E-value: 4.54e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050    1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:CHL00064  1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQEIPLITGRFDPLEQLDEFT 80


                ...
gi 7525050   81 RSF 83
Cdd:CHL00064 81 RSF 83
PsbE COG5720
Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; ...
 1-82 1.98e-49

Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; Photosystem II cytochrome b559 alpha subunit, PsbE is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444430  Cd Length: 83  Bit Score: 150.25  E-value: 1.98e-49
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050   1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:COG5720  1 MAGTTGERPFGDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDEYYTQQRQELPIVSDRFEAKQQIDEFT 80


               ..
gi 7525050  81 RS 82
Cdd:COG5720 81 QK 82
cyt_b559_alpha TIGR01332
cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, ...
 2-81 4.00e-47

cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, about 83 residues in length. The N-terminal half is homologous to the ~ 40-residue beta subunit. Cytochrome b559 is associated with photosystem II. Sequences scoring between trusted and noise cutoffs are fragments. [Energy metabolism, Photosynthesis]


Pssm-ID: 130399  Cd Length: 80  Bit Score: 144.65  E-value: 4.00e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050     2 SGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSR 81
Cdd:TIGR01332  1 SGTTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPNEYFTQTRQELPLLQDRFDANQEIQEFNQ 80
Cytochrom_B559a pfam00284
Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal ...
 42-79 2.21e-21

Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion of cytochrome b559 alpha chain, matches to this family should be accompanied by a match to the pfam00283 family also. The Prosite pattern pattern matches the transmembrane region of the cytochrome b559 alpha and beta subunits.


Pssm-ID: 425581  Cd Length: 39  Bit Score: 78.43  E-value: 2.21e-21
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 7525050    42 LAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEF 79
Cdd:pfam00284  1 LAYDVFGTPRPNEYFTQERQELPIVSDRFEAKQQIDEF 38
 
Name Accession Description Interval E-value
psbE CHL00064
photosystem II protein V
 1-83 4.54e-56

photosystem II protein V


Pssm-ID: 177004  Cd Length: 83  Bit Score: 167.22  E-value: 4.54e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050    1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:CHL00064  1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQEIPLITGRFDPLEQLDEFT 80


                ...
gi 7525050   81 RSF 83
Cdd:CHL00064 81 RSF 83
PsbE COG5720
Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; ...
 1-82 1.98e-49

Photosystem II cytochrome b559 alpha subunit, PsbE [Energy production and conversion]; Photosystem II cytochrome b559 alpha subunit, PsbE is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444430  Cd Length: 83  Bit Score: 150.25  E-value: 1.98e-49
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050   1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:COG5720  1 MAGTTGERPFGDIITSIRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDEYYTQQRQELPIVSDRFEAKQQIDEFT 80


               ..
gi 7525050  81 RS 82
Cdd:COG5720 81 QK 82
psbE PRK02557
cytochrome b559 subunit alpha; Provisional
 1-81 2.19e-48

cytochrome b559 subunit alpha; Provisional


Pssm-ID: 179444  Cd Length: 81  Bit Score: 147.51  E-value: 2.19e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050    1 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFS 80
Cdd:PRK02557  1 MAGSTGERPFFDIITSIRYWVIHAITIPALFIAGWLFVSTGLAYDAFGTPRPDEYFTQSRSKAPIVSDRYEAKQQLDEFL 80


                .
gi 7525050   81 R 81
Cdd:PRK02557 81 K 81
cyt_b559_alpha TIGR01332
cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, ...
 2-81 4.00e-47

cytochrome b559, alpha subunit; This model describes the alpha subunit of cytochrome b559, about 83 residues in length. The N-terminal half is homologous to the ~ 40-residue beta subunit. Cytochrome b559 is associated with photosystem II. Sequences scoring between trusted and noise cutoffs are fragments. [Energy metabolism, Photosynthesis]


Pssm-ID: 130399  Cd Length: 80  Bit Score: 144.65  E-value: 4.00e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525050     2 SGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSR 81
Cdd:TIGR01332  1 SGTTGERPFSDIVTSIRYWVIHSITIPMLFIAGWLFVSTGLAYDAFGTPRPNEYFTQTRQELPLLQDRFDANQEIQEFNQ 80
Cytochrom_B559a pfam00284
Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal ...
 42-79 2.21e-21

Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion of cytochrome b559 alpha chain, matches to this family should be accompanied by a match to the pfam00283 family also. The Prosite pattern pattern matches the transmembrane region of the cytochrome b559 alpha and beta subunits.


Pssm-ID: 425581  Cd Length: 39  Bit Score: 78.43  E-value: 2.21e-21
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 7525050    42 LAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEF 79
Cdd:pfam00284  1 LAYDVFGTPRPNEYFTQERQELPIVSDRFEAKQQIDEF 38
Cytochrom_B559 pfam00283
Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;
6-34 6.58e-09

Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits;


Pssm-ID: 425580  Cd Length: 29  Bit Score: 46.63  E-value: 6.58e-09
                         10        20
                 ....*....|....*....|....*....
gi 7525050     6 GERSFADIITSIRYWVIHSITIPSLFIAG 34
Cdd:pfam00283  1 GERPFTYPIFTVRWLAIHALTVPTVFFLG 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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