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Conserved domains on  [gi|11466320|ref|NP_051148|]
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ribosomal protein S14 (mitochondrion) [Cafeteria roenbergensis]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 10446592)

uS14 family ribosomal protein similar to Homo sapiens mitochondrial 28S ribosomal protein S14 and Saccharomyces cerevisiae mitochondrial 37S ribosomal protein MRP2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsN super family cl42338
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 57-99 3.47e-11

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


The actual alignment was detected with superfamily member COG0199:

Pssm-ID: 439969  Cd Length: 60  Bit Score: 53.48  E-value: 3.47e-11
                       10        20        30        40
               ....*....|....*....|....*....|....*....|...
gi 11466320 57 RVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW 99
Cdd:COG0199 18 RLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
 
Name Accession Description Interval E-value
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 57-99 3.47e-11

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 53.48  E-value: 3.47e-11
                       10        20        30        40
               ....*....|....*....|....*....|....*....|...
gi 11466320 57 RVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW 99
Cdd:COG0199 18 RLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 46-97 8.06e-11

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 52.41  E-value: 8.06e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 11466320   46 LTQKQKWASLNRVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLA 97
Cdd:pfam00253  2 LQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
rps14 CHL00074
ribosomal protein S14
 56-99 6.45e-08

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 46.34  E-value: 6.45e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11466320   56 NRVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW 99
Cdd:CHL00074  57 TRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
 
Name Accession Description Interval E-value
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 57-99 3.47e-11

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 53.48  E-value: 3.47e-11
                       10        20        30        40
               ....*....|....*....|....*....|....*....|...
gi 11466320 57 RVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW 99
Cdd:COG0199 18 RLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 46-97 8.06e-11

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 52.41  E-value: 8.06e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 11466320   46 LTQKQKWASLNRVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLA 97
Cdd:pfam00253  2 LQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
rps14 CHL00074
ribosomal protein S14
 56-99 6.45e-08

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 46.34  E-value: 6.45e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11466320   56 NRVKNRCLVTQRSRGVFRLTKTSRLTFRKLATQGLLPGIRLATW 99
Cdd:CHL00074  57 TRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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