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Conserved domains on  [gi|11466326|ref|NP_051154|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Cafeteria roenbergensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 17-125 1.43e-35

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 118.30  E-value: 1.43e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326  17 FLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLG 96
Cdd:COG0838   9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELG 88

                        90       100
                ....*....|....*....|....*....
gi 11466326  97 TQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:COG0838  89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 17-125 1.43e-35

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 118.30  E-value: 1.43e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326  17 FLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLG 96
Cdd:COG0838   9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELG 88

                        90       100
                ....*....|....*....|....*....
gi 11466326  97 TQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:COG0838  89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-124 2.71e-35

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 116.75  E-value: 2.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326    31 FIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLGTQTFWLMIFFLAIL 110
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 11466326   111 ALGFAYEIVKGALD 124
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 18-125 1.58e-34

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 115.73  E-value: 1.58e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   18 LFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLGT 97
Cdd:PRK06602  13 IFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGW 92

                         90       100
                 ....*....|....*....|....*...
gi 11466326   98 QTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDW 120
 
Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 17-125 1.43e-35

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 118.30  E-value: 1.43e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326  17 FLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLG 96
Cdd:COG0838   9 LIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELG 88

                        90       100
                ....*....|....*....|....*....
gi 11466326  97 TQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:COG0838  89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-124 2.71e-35

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 116.75  E-value: 2.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326    31 FIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLGTQTFWLMIFFLAIL 110
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 11466326   111 ALGFAYEIVKGALD 124
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 18-125 1.58e-34

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 115.73  E-value: 1.58e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   18 LFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLGT 97
Cdd:PRK06602  13 IFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGW 92

                         90       100
                 ....*....|....*....|....*...
gi 11466326   98 QTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 16-125 3.88e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 94.39  E-value: 3.88e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYL 95
Cdd:MTH00055   8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87

                         90       100       110
                 ....*....|....*....|....*....|
gi 11466326   96 GTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00055  88 GLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 16-125 4.26e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 86.27  E-value: 4.26e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYL 95
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 11466326   96 GTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 16-125 1.22e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 85.32  E-value: 1.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMP--WLVNFV 93
Cdd:MTH00113   3 LISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLT 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 11466326   94 YLGTQTFWLMIFFLaILALGFAYEIVKGALDW 125
Cdd:MTH00113  83 TPTTTLTWATIILT-LLTLGLIYEWLQGGLEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 15-125 8.64e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 82.98  E-value: 8.64e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   15 KMFLFICLSFALSCVLFIVSLLLASHDPY-YEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNfv 93
Cdd:MTH00148   3 SILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS-- 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 11466326   94 YLGTQTFWLMI---FFLAILALGFAYEIVKGALDW 125
Cdd:MTH00148  81 LGSSFSVWSLTslfIFLLILILGLFHEWNEGSLDW 115
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
8-125 1.33e-21

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 82.87  E-value: 1.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326    8 VYQEMYQKMFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMP 87
Cdd:PRK07756   4 VYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 11466326   88 WLVNFVYLGTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK07756  84 WAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 20-125 5.51e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 81.12  E-value: 5.51e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   20 ICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFL--MPWlVNFVYLGT 97
Cdd:MTH00136   8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPW-GDQLPSPL 86

                         90       100
                 ....*....|....*....|....*...
gi 11466326   98 QTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00136  87 LTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-125 5.90e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 80.81  E-value: 5.90e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLM--PWLVNFV 93
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 11466326   94 YLGTQTFWLMIfFLAILALGFAYEIVKGALDW 125
Cdd:MTH00069  82 TPTNTLFWSTL-ILILLTLGLIYEWIQGGLEW 112
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
16-125 1.20e-19

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 78.17  E-value: 1.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLF-IVSLLLASHDPYYEKMTAYECGFEPFQDArHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVY 94
Cdd:PRK08489  16 LLVLTFVAFFLTTRLArFISRKLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKL 94

                         90       100       110
                 ....*....|....*....|....*....|.
gi 11466326   95 LGTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK08489  95 LGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 16-125 2.12e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 76.86  E-value: 2.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPwLVNFVYL 95
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLP-LPWSNQL 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 11466326   96 GTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00203  83 SSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 16-125 3.54e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 76.90  E-value: 3.54e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALScvlfivSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYL 95
Cdd:MTH00030  19 ILLLVSISFTLG------NSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQL 92

                         90       100       110
                 ....*....|....*....|....*....|
gi 11466326   96 GTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00030  93 NLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 11-125 4.41e-19

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 76.25  E-value: 4.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   11 EMYQKMFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDAR--HKVDIRFYIVAILFIIFDIEVVFLMPW 88
Cdd:PRK07928   2 NVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPW 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 11466326   89 LVNFVYLGTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK07928  82 AVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 13-125 7.40e-19

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 75.79  E-value: 7.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   13 YQKMFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNF 92
Cdd:CHL00022   7 YDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 11466326   93 VYLGTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:CHL00022  87 DVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 17-125 8.07e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 75.40  E-value: 8.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   17 FLFICLsfALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYLG 96
Cdd:MTH00042   7 FLLIIL--ILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITN 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 11466326   97 TQT-FWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00042  85 PSTlLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 16-125 6.12e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 68.04  E-value: 6.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLM--PWLVNFV 93
Cdd:MTH00106   3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTN 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 11466326   94 YLGTQTFwLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00106  83 NLNTMLT-MALLLISLLALSLAYEWTQKGLEW 113
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 15-125 6.25e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 67.88  E-value: 6.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   15 KMFLFICLSFALSCVLFIVSLLLASHDPY-YEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFV 93
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 11466326   94 YLGTQTF-WLMIFFLAILALGFAYEIVKGALDW 125
Cdd:MTH00161  81 TSNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 45-125 3.50e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 61.03  E-value: 3.50e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   45 EKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPwlVNFVYLGTQTFWLM---IFFLAILALGFAYEIVKG 121
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMP--VPTILMTSTSKTVVytsILFLLILVIGLIHEWREG 111


                 ....
gi 11466326  122 ALDW 125
Cdd:MTH00012 112 SLDW 115
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 17-125 1.59e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 59.24  E-value: 1.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   17 FLFICLSFALSCVLFIVSLLLASHDPY-YEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYL 95
Cdd:MTH00202   5 LFMSILSILISSLLFLVSWMLSFRSLMdREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSS 84

                         90       100       110
                 ....*....|....*....|....*....|.
gi 11466326   96 GTQTFWLMIF-FLAILALGFAYEIVKGALDW 125
Cdd:MTH00202  85 WSKGGLLGGTiFLLILIGGLIHEWKEGSLDW 115
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 66-125 6.25e-06

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 42.49  E-value: 6.25e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   66 IRFYIVAILFIIFDIEVVFLMPWLVNFVYLGTQTFWLMIFFLAILALGFAYEIVKGALDW 125
Cdd:PRK06432  83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 16-107 3.71e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 37.18  E-value: 3.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466326   16 MFLFICLSFALSCVLFIVSLLLASHDPYYEKMTAYECGFEPFQDARHKVDIRFYIVAILFIIFDIEVVFLMPWLVNFVYL 95
Cdd:MTH00092   4 LIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSS 83

                         90
                 ....*....|..
gi 11466326   96 GTQTFWLMIFFL 107
Cdd:MTH00092  84 LISFFMLMIFIF 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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