|
Name |
Accession |
Description |
Interval |
E-value |
| AtpA |
COG0056 |
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ... |
35-570 |
0e+00 |
|
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439826 [Multi-domain] Cd Length: 504 Bit Score: 730.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 35 AQVDKKTSKVQPVLLGEVEKVKDGVAFVTRLGNVRFSELVSFipapsrlkslrsKGNsnliVEGMVVGIEQDYISVIIFG 114
Cdd:COG0056 14 QQIENYDPEVEVEEVGTVLSVGDGIARVYGLPNAMAGELLEF------------PGG----VYGMALNLEEDNVGVVLLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 115 DERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnKSPkddlfrnyyigrIVTGYSRPVEIQAPGII 194
Cdd:COG0056 78 DYEGIKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDG--------KGP------------IEAEERRPVERPAPGVI 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 195 VRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllpSKPCYCI 274
Cdd:COG0056 138 DRQPVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----------------------GKDVICI 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 275 YVGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVI 354
Cdd:COG0056 195 YVAIGQKASTVAQVVETLEE----------------HGAMEYTIVVAATASDPAPLQYIAPYAGCAMGEYFMDQGKDVLI 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 355 VYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNVISIT 434
Cdd:COG0056 259 VYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISIT 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 435 DGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVE 514
Cdd:COG0056 339 DGQIFLESDLFNAGIRPAINVGLSVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGERLVE 418
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 11466328 515 LLKQGQYVPLEVSVQIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQNYKGMVTS 570
Cdd:COG0056 419 LLKQPQYSPLSVEEQVAILYAGTNGYLDDVPVEKVREFEKELLEYLRAKHPDLLKE 474
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
36-570 |
0e+00 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 715.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 36 QVDKKTSKVQPVLLGEVEKVKDGVAFVTRLGNVRFSELVSFipapsrlkslrsKGNsnliVEGMVVGIEQDYISVIIFGD 115
Cdd:PRK09281 15 QIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEF------------PGG----VYGIALNLEEDNVGAVILGD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 116 ERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDdptrpvelNKspkddlfrnyyiGRIVTGYSRPVEIQAPGIIV 195
Cdd:PRK09281 79 YEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPID--------GK------------GPIEATETRPVERKAPGVID 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 196 RKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllpSKPCYCIY 275
Cdd:PRK09281 139 RKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----------------------GKDVICIY 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 276 VGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIV 355
Cdd:PRK09281 196 VAIGQKASTVAQVVRKLEE----------------HGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIV 259
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 356 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNVISITD 435
Cdd:PRK09281 260 YDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITD 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 436 GQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVEL 515
Cdd:PRK09281 340 GQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVEL 419
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 11466328 516 LKQGQYVPLEVSVQIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQNYKGMVTS 570
Cdd:PRK09281 420 LKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADLLEE 474
|
|
| atpA |
TIGR00962 |
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ... |
31-572 |
0e+00 |
|
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273365 [Multi-domain] Cd Length: 501 Bit Score: 610.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 31 RKYTAQVDKKtSKVQPVllGEVEKVKDGVAFVTRLGNVRFSELVSFipapsrlkslrsKGNsnliVEGMVVGIEQDYISV 110
Cdd:TIGR00962 12 KQEIKNFNVD-SEAEEV--GTVVSVGDGIARVYGLENVMSGELIEF------------EGG----VQGIALNLEEDSVGA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 111 IIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPtrpvelnkspkddlfrnyyiGRIVTGYSRPVEIQA 190
Cdd:TIGR00962 73 VIMGDYSDIREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGK--------------------GPIDSDEFSPVEKIA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 191 PGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllpSKP 270
Cdd:TIGR00962 133 PGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQK-----------------------DSD 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 271 CYCIYVGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGS 350
Cdd:TIGR00962 190 VYCIYVAIGQKASTVAQVVRKLEE----------------HGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRDNGK 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 351 NAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNV 430
Cdd:TIGR00962 254 HALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNV 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 431 ISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGA 510
Cdd:TIGR00962 334 ISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKKQLERGQ 413
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11466328 511 RLVELLKQGQYVPLEVSVQIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQNYKGMVTSSN 572
Cdd:TIGR00962 414 RVVELLKQPQYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFEQALLAYLDANHPDILEEIN 475
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
49-563 |
0e+00 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 584.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 49 LGEVEKVKDGVAFVTRLGNVRFSELVSFipaPSRlkslrskgnsnliVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPR 128
Cdd:PRK13343 28 IGRVESVGDGIAFVSGLPDAALDELLRF---EGG-------------SRGFAFNLEEELVGAVLLDDTADILAGTEVRRT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 129 GNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnKSPkddlfrnyyigrIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLN 208
Cdd:PRK13343 92 GRVLEVPVGDGLLGRVIDPLGRPLDG--------GGP------------LQATARRPLERPAPAIIERDFVTEPLQTGIK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 209 CVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllpSKPCYCIYVGIGQKQSTIARI 288
Cdd:PRK13343 152 VVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQK-----------------------DSDVICVYVAIGQKASAVARV 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 289 AKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQ 368
Cdd:PRK13343 209 IETLRE----------------HGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRE 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 369 MSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQG 448
Cdd:PRK13343 273 LSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAG 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 449 IRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVELLKQGQYVPLEVSV 528
Cdd:PRK13343 353 QRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEE 432
|
490 500 510
....*....|....*....|....*....|....*
gi 11466328 529 QIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQN 563
Cdd:PRK13343 433 QIALLYALNEGLLDAVPLANIQAFEERLLEKLDAR 467
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
44-574 |
0e+00 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 580.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 44 VQPVLLGEVEKVKDGVAFVTRLGNVRFSELVSFipapsrlkslrskgnsnlivEGMVVGI----EQDYISVIIFGDERFV 119
Cdd:CHL00059 2 VKIVNTGTVLQVGDGIARIYGLDEVMAGELVEF--------------------EDGTIGIalnlESNNVGVVLMGDGLMI 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 120 KVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPtrpvelnkspkddlfrnyyiGRIVTGYSRPVEIQAPGIIVRKSV 199
Cdd:CHL00059 62 QEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGK--------------------GEISASESRLIESPAPGIISRRSV 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 200 NKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQaflnetlrnsllSSEGAVvnkllpskpcyCIYVGIG 279
Cdd:CHL00059 122 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ------------KGQNVI-----------CVYVAIG 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 280 QKQSTIARIAKllkrprTLFERNvstkrssvfsALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDL 359
Cdd:CHL00059 179 QKASSVAQVVT------TLQERG----------AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDL 242
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 360 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNVISITDGQIF 439
Cdd:CHL00059 243 SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIF 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 440 LETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVELLKQG 519
Cdd:CHL00059 323 LSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQS 402
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 11466328 520 QYVPLEVSVQIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQN---YKGMVTSSNYL 574
Cdd:CHL00059 403 QSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNkpqFQEIISSTKTF 460
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
131-463 |
1.55e-174 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 495.54 E-value: 1.55e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 131 IVAINVGIGLLGRVIDPLGNVLDDPtrpvelnkspkddlfrnyyiGRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCV 210
Cdd:cd01132 1 IVEVPVGEALLGRVVDALGNPIDGK--------------------GPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAI 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 211 DSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllpSKPCYCIYVGIGQKQSTIARIAK 290
Cdd:cd01132 61 DSLIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----------------------GKKVYCIYVAIGQKRSTVAQIVK 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 291 LLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMS 370
Cdd:cd01132 118 TLEE----------------HGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 371 LLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIR 450
Cdd:cd01132 182 LLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFNKGIR 261
|
330
....*....|...
gi 11466328 451 PAINVGLSVSRVG 463
Cdd:cd01132 262 PAINVGLSVSRVG 274
|
|
| alt_F1F0_F1_al |
TIGR03324 |
alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic ... |
35-562 |
2.73e-148 |
|
alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Pssm-ID: 132367 [Multi-domain] Cd Length: 497 Bit Score: 437.28 E-value: 2.73e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 35 AQVDKKTSKVQPVL----LGEVEKVKDGVAFVTRLGNVRFSELVSFipapsrlkslrsKGNsnliVEGMVVGIEQDYISV 110
Cdd:TIGR03324 10 QQLDQARESFQPQLtvqeVGTVESVSTGIARVHGLPGVGFEELLRF------------PGG----LLGIAFNVDEDEVGV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 111 IIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDdptrpvelNKSPKDDLFRnyyigrivtgysRPVEIQA 190
Cdd:TIGR03324 74 VLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLD--------GGGPLASSPR------------LPIERPA 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 191 PGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAFLNetlrnsllssegaVVnkllpskp 270
Cdd:TIGR03324 134 PPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRN-------------VL-------- 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 271 cyCIYVGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGS 350
Cdd:TIGR03324 193 --CIYCAIGQRASAVAKVVANLRE----------------HGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGR 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 351 NAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIETMANDVSAYIPTNV 430
Cdd:TIGR03324 255 DVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNL 334
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 431 ISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGA 510
Cdd:TIGR03324 335 ISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGARLDENTRKTIEHGR 414
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 11466328 511 RLVELLKQGQYVPLEVSVQIVFVFLGISGLLDGRKLENLGQLKSILRSYLRQ 562
Cdd:TIGR03324 415 RIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTS 466
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
98-547 |
3.76e-110 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 342.02 E-value: 3.76e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 98 GMVVGIEQD-YISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLddptrPVELNKSPKDDLFRNYYIG 176
Cdd:PTZ00185 80 GLVFNLEKDgRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEV-----PVGLLTRSRALLESEQTLG 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 177 RIVTGysrpveiqAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAFLNETLRnslls 256
Cdd:PTZ00185 155 KVDAG--------APNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQIL----- 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 257 SEGAVVNkllpskpcycIYVGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVASISSDSAPIQFLAPY 336
Cdd:PTZ00185 222 SKNAVIS----------IYVSIGQRCSNVARIHRLLRS----------------YGALRYTTVMAATAAEPAGLQYLAPY 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 337 TGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTALPIIE 416
Cdd:PTZ00185 276 SGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 417 TMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGA 496
Cdd:PTZ00185 356 TLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKLAADSVGGS 435
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 11466328 497 SLDAETkrqLNRGARLVELLKQGQyvPLEVSVQIVFVFLGISGLLDGRKLE 547
Cdd:PTZ00185 436 QVQTVP---MIRGARFVALFNQKN--PSFFMNALVSLYACLNGYLDDVKVN 481
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
206-460 |
1.85e-94 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 288.49 E-value: 1.85e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 206 GLNCVDSMVPIGLGQRELIIGDRQVGKTAVAiDMILNQAFLNetlrnsllssegavvnkllpskpcYCIYVGIGQKQSTI 285
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLA-GMIARQASAD------------------------VVVYALIGERGREV 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 286 ARIAKLLKRPRtlfernvstkrssvfsALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVA 365
Cdd:pfam00006 56 REFIEELLGSG----------------ALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEA 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 366 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDavGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELF 445
Cdd:pfam00006 120 LREISLALGEPPGREGYPPSVFSLLARLLERAGRVKG--KGGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLA 197
|
250
....*....|....*
gi 11466328 446 NQGIRPAINVGLSVS 460
Cdd:pfam00006 198 EKGHYPAIDVLASVS 212
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
91-518 |
1.64e-87 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 280.71 E-value: 1.64e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 91 NSNLIVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLddptRPVELNKSPKDDLF 170
Cdd:PRK07165 30 KNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDGNII----YPEAQNPLSKKFLP 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 171 RnyyigrivtgySRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetl 250
Cdd:PRK07165 106 N-----------TSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQK------ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 251 rnsllssegavvnkllpSKPCYCIYVGIGQKQSTIARIAKLLKRprtlfernvstkrssvFSALNYTIIVaSISSDSAPI 330
Cdd:PRK07165 169 -----------------NTNVKCIYVAIGQKRENLSRIYETLKE----------------HDALKNTIII-DAPSTSPYE 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 331 QFLAPYTGCTVGELFrdSGSNAV-IVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMsdaVGGGSL 409
Cdd:PRK07165 215 QYLAPYVAMAHAENI--SYNDDVlIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKF---KNRKTI 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 410 TALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVM 489
Cdd:PRK07165 290 TALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEISKIYRAYKRQL 369
|
410 420
....*....|....*....|....*....
gi 11466328 490 EFAKFGASLDAETKRQLNRGARLVELLKQ 518
Cdd:PRK07165 370 KLSMLDYDLNKETSDLLFKGKMIEKMFNQ 398
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
134-462 |
2.28e-86 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 269.71 E-value: 2.28e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 134 INVGIGLLGRVIDPLGNVLDDptrpvelnkspkddlfrnyyIGRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSM 213
Cdd:cd19476 2 VPVGPELLGRILDGLGEPLDG--------------------LPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 214 VPIGLGQRELIIGDRQVGKTAVAIDMILNQAflnetlrnsllssegavvnkllPSKPCYCIYVGIGQKQSTIARIAKLLK 293
Cdd:cd19476 62 APYGRGQKIGIFGGSGVGKTVLAMQLARNQA----------------------KAHAGVVVFAGIGERGREVNDLYEEFT 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 294 RPrtlfernvstkrssvfSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLL 373
Cdd:cd19476 120 KS----------------GAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALREMSALL 183
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 374 RRPPGREAYPGDVFYLHSRLLERAAQMSDavGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAI 453
Cdd:cd19476 184 GEPPGREGYPPYLFTKLATLYERAGKVKD--GGGSITAIPAVSTPGDDLTDPIPDNTFAILDGQIVLSRELARKGIYPAI 261
|
....*....
gi 11466328 454 NVGLSVSRV 462
Cdd:cd19476 262 NVLDSTSRV 270
|
|
| ATP-synt_F1_alpha_C |
cd18113 |
F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex ... |
471-570 |
2.93e-41 |
|
F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex of F0F1-ATP synthase, C-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Pssm-ID: 349748 [Multi-domain] Cd Length: 126 Bit Score: 145.59 E-value: 2.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 471 MKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVELLKQGQYVPLEVSVQIVFVFLGISGLLDGRKLENLG 550
Cdd:cd18113 1 MKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKKQLERGERLTELLKQPQYSPLSVEEQVAILYAATNGYLDDIPVEKIK 80
|
90 100
....*....|....*....|
gi 11466328 551 QLKSILRSYLRQNYKGMVTS 570
Cdd:cd18113 81 EFEKELLEYLRSNHPDLLEE 100
|
|
| ATP-synt_ab_C |
pfam00306 |
ATP synthase alpha/beta chain, C terminal domain; |
467-565 |
8.97e-39 |
|
ATP synthase alpha/beta chain, C terminal domain;
Pssm-ID: 425595 [Multi-domain] Cd Length: 126 Bit Score: 138.73 E-value: 8.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 467 QFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETKRQLNRGARLVELLKQGQYVPLEVSVQIVFVFLGISGLLDGRKL 546
Cdd:pfam00306 1 QTKAMKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKAQLDRGERLVELLKQPQYSPLSVEEQVIILYAATNGLLDDIPV 80
|
90
....*....|....*....
gi 11466328 547 ENLGQLKSILRSYLRQNYK 565
Cdd:pfam00306 81 EKVKEFEKELLEYLRSNHP 99
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
90-529 |
4.40e-38 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 146.11 E-value: 4.40e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 90 GNSNLIVEgmVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnkspkddl 169
Cdd:PRK06820 57 EPQGMLAE--VVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG--------------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 170 frnyyiGRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnqaflneT 249
Cdd:PRK06820 120 ------GPPLTGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKS---------------T 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 250 LRNSLLSSEGAVVNKLlpskpcyciyvgigqkqstiARIAKLLKRPRTLFERNVSTKrssvfsALNYTIIVASiSSDSAP 329
Cdd:PRK06820 179 LLGMLCADSAADVMVL--------------------ALIGERGREVREFLEQVLTPE------ARARTVVVVA-TSDRPA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 330 IQFL-APYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDavggGS 408
Cdd:PRK06820 232 LERLkGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR----GS 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 409 LTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREV 488
Cdd:PRK06820 308 ITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEI 387
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 11466328 489 MEFAKFG---ASLDAETKRQLNRGARLVELLKQ--GQYVPLEVSVQ 529
Cdd:PRK06820 388 ELLVRVGeyqAGEDLQADEALQRYPAICAFLQQdhSETAHLETTLE 433
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
86-523 |
6.74e-34 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 134.11 E-value: 6.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 86 LRSKGNsNLIVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDD--PTRPvelnk 163
Cdd:PRK06936 50 LRNPDN-SLSLQAEVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGghPPEP----- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 164 spkddlfRNYYigrivtgysrPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnq 243
Cdd:PRK06936 124 -------AAWY----------PVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS---------- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 244 aflneTLRNSLLSSEGAVVnkllpskpcyCIYVGIGQKQSTIariakllkrpRTLFERNVSTKrssvfsALNYTIIVASI 323
Cdd:PRK06936 177 -----TLLASLIRSAEVDV----------TVLALIGERGREV----------REFIESDLGEE------GLRKAVLVVAT 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 324 SSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQmSDA 403
Cdd:PRK06936 226 SDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ-SDK 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 404 vggGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELA 483
Cdd:PRK06936 305 ---GSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLA 381
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 11466328 484 QYREVMEFAKFG---ASLDAETKRQLNRGARLVELLKQGQYVP 523
Cdd:PRK06936 382 KYEEVELLLQIGeyqKGQDKEADQAIERIGAIRGFLRQGTHEL 424
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
96-529 |
8.46e-33 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 130.92 E-value: 8.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 96 VEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnkspkddlfrnyyI 175
Cdd:COG1157 54 VLAEVVGFRGDRVLLMPLGDLEGISPGARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDG--------------------K 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 176 GRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELII---GdrqVGKTaVAIDMILNQA-------- 244
Cdd:COG1157 114 GPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQRIGIFagsG---VGKS-TLLGMIARNTeadvnvia 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 245 -----------FLNETlrnslLSSEGavvnkllpskpcyciyvgigqkqstiariaklLKRprtlfernvstkrssvfsa 313
Cdd:COG1157 190 ligergrevreFIEDD-----LGEEG--------------------------------LAR------------------- 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 314 lnyTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 393
Cdd:COG1157 214 ---SVVVVATSDEPPLMRLRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRL 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 394 LERAAQMsdavGGGSLTAL------------PIIETmandvsayiptnVISITDGQIFLETELFNQGIRPAINVGLSVSR 461
Cdd:COG1157 291 LERAGNG----GKGSITAFytvlvegddmndPIADA------------VRGILDGHIVLSRKLAERGHYPAIDVLASISR 354
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11466328 462 VGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGA----SlDAETKRQLNRGARLVELLKQG--QYVPLEVSVQ 529
Cdd:COG1157 355 VMPDIVSPEHRALARRLRRLLARYEENEDLIRIGAyqpgS-DPELDEAIALIPAIEAFLRQGmdERVSFEESLA 427
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
134-462 |
3.42e-32 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 124.98 E-value: 3.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 134 INVGIGLLGRVIDPLGNVLDdptrpvelNKSPKDDLFRnyyigrivtgysRPVEIQAPGIIVRKSVNKPLLTGLNCVDSM 213
Cdd:cd01136 2 IPVGDGLLGRVIDALGEPLD--------GKGLPDEPER------------RPLIAAPPNPLKRAPIEQPLPTGVRAIDGL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 214 VPIGLGQRELIIGDRQVGKTaVAIDMILNQAflnetlrnsllsseGAVVNkllpskpcycIYVGIGQK----QSTIARI- 288
Cdd:cd01136 62 LTCGEGQRIGIFAGSGVGKS-TLLGMIARNT--------------DADVN----------VIALIGERgrevREFIEKDl 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 289 -AKLLKRprtlfernvstkrssvfsalnyTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYR 367
Cdd:cd01136 117 gEEGLKR----------------------SVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQR 174
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 368 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAqMSDAvggGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQ 447
Cdd:cd01136 175 EVGLAAGEPPTRRGYPPSVFALLPRLLERAG-NGEK---GSITAFYTVLVEGDDFNDPIADEVRSILDGHIVLSRRLAER 250
|
330
....*....|....*
gi 11466328 448 GIRPAINVGLSVSRV 462
Cdd:cd01136 251 GHYPAIDVLASISRV 265
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
89-536 |
6.04e-32 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 128.69 E-value: 6.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 89 KGNSNLIVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPVELNkspkdd 168
Cdd:PRK07721 48 KGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLA------ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 169 lfrnyyigrivtgySRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVaIDMILNQAflne 248
Cdd:PRK07721 122 --------------PVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNT---- 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 249 tlrnsllsseGAVVNkllpskpcyciyvgigqkqsTIARIAKLLKRPRTLFERNVSTKrssvfsALNYTIIVASISSDSA 328
Cdd:PRK07721 183 ----------SADLN--------------------VIALIGERGREVREFIERDLGPE------GLKRSIVVVATSDQPA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 329 PIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqmsdAVGGGS 408
Cdd:PRK07721 227 LMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG----TNASGS 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 409 LTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREV 488
Cdd:PRK07721 303 ITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNS 382
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 11466328 489 MEFAKFGA---SLDAETKRQLNRGARLVELLKQG--QYVPLEVSVQIVFVFLG 536
Cdd:PRK07721 383 EDLINIGAykrGSSREIDEAIQFYPQIISFLKQGtdEKATFEESIQALLSLFG 435
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
100-523 |
2.38e-30 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 123.91 E-value: 2.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 100 VVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPvelnkspkDDLFRNYyigriv 179
Cdd:PRK07594 57 VVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP--------DVCWKDY------ 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 180 tgysrpvEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnqaflneTLRNSLLSSEG 259
Cdd:PRK07594 123 -------DAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS---------------TLLAMLCNAPD 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 260 AVVNKLlpskpcyciyVGIGQKQSTIariakllkrpRTLFERNVSTKrssvfsALNYTIIVASISSDSAPIQFLAPYTGC 339
Cdd:PRK07594 181 ADSNVL----------VLIGERGREV----------REFIDFTLSEE------TRKRCVIVVATSDRPALERVRALFVAT 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 340 TVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqMSDAvggGSLTALPIIETMA 419
Cdd:PRK07594 235 TIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEK---GSITAFYTVLVEG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 420 NDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGA--- 496
Cdd:PRK07594 311 DDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEyqr 390
|
410 420
....*....|....*....|....*..
gi 11466328 497 SLDAETKRQLNRGARLVELLKQGQYVP 523
Cdd:PRK07594 391 GVDTDTDKAIDTYPDICTFLRQSKDEV 417
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
98-529 |
4.14e-29 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 120.18 E-value: 4.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 98 GMVVGIEQDYISVIIFGderFV---KVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLD-----DPTRPVELNKSPKDDL 169
Cdd:PRK08472 56 GMVVVIEKEQFGISPFS---FIegfKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDgkgaiDYERYAPIMKAPIAAM 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 170 FRnyyigrivtgysrpveiqapGIIvrksvNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVaIDMIlnqaflnet 249
Cdd:PRK08472 133 KR--------------------GLI-----DEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMI--------- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 250 lrnsllssegaVVNKLLPSKpcyciyvgigqkqsTIARIAKLLKRPRTLFERNVSTKrssvfsaLNYTIIVASISSDSAP 329
Cdd:PRK08472 178 -----------VKGCLAPIK--------------VVALIGERGREIPEFIEKNLGGD-------LENTVIVVATSDDSPL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 330 IQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSdavGGGSL 409
Cdd:PRK08472 226 MRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE---GKGSI 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 410 TALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVM 489
Cdd:PRK08472 303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENE 382
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 11466328 490 EFAKFGA---SLDAETKRQLNRGARLVELLKQG--QYVPLEVSVQ 529
Cdd:PRK08472 383 VLIRIGAyqkGNDKELDEAISKKEFMEQFLKQNpnELFPFEQTFE 427
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
87-518 |
1.31e-28 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 118.56 E-value: 1.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 87 RSKGNSNLIVEGMVVGI--EQDYISVIifGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPVELNKS 164
Cdd:PRK08149 35 AGWHSNEVIARAQVVGFqrERTILSLI--GNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 165 PKddlfrnyyigrivtgySRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVaIDMILNQA 244
Cdd:PRK08149 113 SE----------------ERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL-MNMLIEHS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 245 FLNetlrnsllssegavvnkllpskpcycIYV-G-IGQKQSTIARIAKLLKRprtlfernvSTKRSSvfsalnyTIIVAS 322
Cdd:PRK08149 176 EAD--------------------------VFViGlIGERGREVTEFVESLRA---------SSRREK-------CVLVYA 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 323 ISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqmsd 402
Cdd:PRK08149 214 TSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPG---- 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 403 AVGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLEL 482
Cdd:PRK08149 290 ATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLL 369
|
410 420 430
....*....|....*....|....*....|....*....
gi 11466328 483 AQYREVMEFAKFG---ASLDAETKRQLNRGARLVELLKQ 518
Cdd:PRK08149 370 TRLEELQLFIDLGeyrRGENADNDRAMDKRPALEAFLKQ 408
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
94-488 |
5.77e-28 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 116.79 E-value: 5.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 94 LIVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDdptrpvelNKSPKDdlfrny 173
Cdd:PRK09099 58 LLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPID--------GGGPLD------ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 174 yigrivTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnqaflneTLRNS 253
Cdd:PRK09099 124 ------CDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS---------------TLMGM 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 254 LLSSEGAVVNkllpskpcycIYVGIGQKQSTIARIAKLLKRPRTLfernvstKRSsvfsalnytIIVASISSDSAPIQFL 333
Cdd:PRK09099 183 FARGTQCDVN----------VIALIGERGREVREFIELILGEDGM-------ARS---------VVVCATSDRSSIERAK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 334 APYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqMSDAvggGSLTALP 413
Cdd:PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAG-MGET---GSITALY 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11466328 414 IIetMANDVSAYIPT--NVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREV 488
Cdd:PRK09099 313 TV--LAEDESGSDPIaeEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREV 387
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
96-462 |
3.14e-26 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 111.72 E-value: 3.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 96 VEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnkspkddlfrnyyI 175
Cdd:PRK08972 59 LEAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDG--------------------L 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 176 GRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTaVAIDMIlnqaflnetlrnsll 255
Cdd:PRK08972 119 GPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKS-VLLGMM--------------- 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 256 sSEGAVVNkllpskpcyCIYVG-IGQKQSTIAR-IAKLLKRPrtlfERnvstKRSSVFSAlnytiivasiSSDSAPIQFL 333
Cdd:PRK08972 183 -TRGTTAD---------VIVVGlVGERGREVKEfIEEILGEE----GR----ARSVVVAA----------PADTSPLMRL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 334 -APYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDavGGGSLTAL 412
Cdd:PRK08972 235 kGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAF 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 11466328 413 PIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRV 462
Cdd:PRK08972 313 YTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRV 362
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
68-461 |
1.30e-24 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 107.01 E-value: 1.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 68 VRFSELVSFipapsrlkslRSKGNSNLiveGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIvAINVGIGLLGRVIDP 147
Cdd:PRK06002 47 VRLGDFVAI----------RADGGTHL---GEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGPL-RIRPDPSWKGRVINA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 148 LGNVLDDPtrpvelnkspkddlfrnyyiGRIVTG-YSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIG 226
Cdd:PRK06002 113 LGEPIDGL--------------------GPLAPGtRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 227 DRQVGKTAVAIDMILNQAFlnETLRNSLLSSEGAVVNKLLpskpcyciyvgigqkQSTIAriakllkrprtlfernvstk 306
Cdd:PRK06002 173 GSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFL---------------EDTLA-------------------- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 307 rssvfSALNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDV 386
Cdd:PRK06002 216 -----DNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSV 290
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 11466328 387 FYLHSRLLERAAQMSDavGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSR 461
Cdd:PRK06002 291 FSELPRLLERAGPGAE--GGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
96-518 |
2.35e-23 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 103.05 E-value: 2.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 96 VEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDdptrpvelnkspkddlfrnyyi 175
Cdd:PRK07196 52 IEAQVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLD---------------------- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 176 GRIVTGYSRPVEIQAPGI--IVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTaVAIDMILNqaflnetlrns 253
Cdd:PRK07196 110 GKGQLGGSTPLQQQLPQIhpLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS-VLLGMITR----------- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 254 llSSEGAVVnkllpskpcyciYVG-IGQKQSTIariakllkrpRTLFERNVSTkrssvfSALNYTIIVASiSSDSAPIQF 332
Cdd:PRK07196 178 --YTQADVV------------VVGlIGERGREV----------KEFIEHSLQA------AGMAKSVVVAA-PADESPLMR 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 333 LAPYTGC-TVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqmsDAVGGGSLTA 411
Cdd:PRK07196 227 IKATELChAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAG---NSSGNGTMTA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 412 LPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEF 491
Cdd:PRK07196 304 IYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPL 383
|
410 420 430
....*....|....*....|....*....|
gi 11466328 492 AKFGASL---DAETKRQLNRGARLVELLKQ 518
Cdd:PRK07196 384 IPLGGYVagaDPMADQAVHYYPAITQFLRQ 413
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
81-519 |
5.13e-23 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 102.12 E-value: 5.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 81 SRLKSLRSKGNSNLIVEGMVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDdptrpve 160
Cdd:PRK05688 50 SRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALD------- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 161 lNKSPkddlfrnyyigriVTGYSRpVEIQAPGI--IVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTaVAID 238
Cdd:PRK05688 123 -GKGP-------------MKAEDW-VPMDGPTInpLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKS-VLLG 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 239 MILNqaFLNETLrnsllssegavvnkllpskpcycIYVG-IGQKQSTIARIAKLLKRPRTLfernvstKRSsvfsalnyt 317
Cdd:PRK05688 187 MMTR--FTEADI-----------------------IVVGlIGERGREVKEFIEHILGEEGL-------KRS--------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 318 IIVASiSSDSAPIQFLAPYTGCT-VGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 396
Cdd:PRK05688 226 VVVAS-PADDAPLMRLRAAMYCTrIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVER 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 397 AAqmSDAVGGGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAG 476
Cdd:PRK05688 305 AG--NAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQ 382
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 11466328 477 TLKLELAQYREVMEFAKFGASL---DAETKRQLNRGARLVELLKQG 519
Cdd:PRK05688 383 RFKQLWSRYQQSRDLISVGAYVaggDPETDLAIARFPHLVQFLRQG 428
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
92-530 |
6.13e-20 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 92.66 E-value: 6.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 92 SNLIVEgmVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPVELNKSPkddLFr 171
Cdd:PRK05922 52 PPILAE--VIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKP---LF- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 172 nyyigrivtgySRPveiqaPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnqaflnetlr 251
Cdd:PRK05922 126 -----------SSP-----PSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS------------------ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 252 nSLLSSegavvnkllpskpcycIYVGigqKQSTIARIAKLLKRPRTLfeRNVSTKRSSVFSAlNYTIIVASISSDSAPIQ 331
Cdd:PRK05922 172 -SLLST----------------IAKG---SKSTINVIALIGERGREV--REYIEQHKEGLAA-QRTIIIASPAHETAPTK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 332 FLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDavggGSLTA 411
Cdd:PRK05922 229 VIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDK----GSITA 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 412 LPIIETMANDVSAYIPTnVISITDGQIFLEtelfNQG---IRPAINVGLSVSRvgSAAQFKPMKQIAGTLKLE--LAQYR 486
Cdd:PRK05922 305 LYAILHYPNHPDIFTDY-LKSLLDGHFFLT----PQGkalASPPIDILTSLSR--SARQLALPHHYAAAEELRslLKAYH 377
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 11466328 487 EVMEFAKFGASLDAETKrQLNRGARLVELLKQGQYVPLEVSVQI 530
Cdd:PRK05922 378 EALDIIQLGAYVPGQDA-HLDRAVKLLPSIKQFLSQPLSSYCAL 420
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
90-531 |
6.85e-19 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 89.65 E-value: 6.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 90 GNSNLIVEgmVVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPVELNKSPKDdl 169
Cdd:PRK06793 49 GEHNVLCE--VIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLD-- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 170 frnyyigrivtgysrpveiqAPGI--IVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVaIDMILNQAFLN 247
Cdd:PRK06793 125 --------------------APPIhaFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-LGMIAKNAKAD 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 248 ETLRnSLLSSEGAVVNKLLPSKpcyciyvgIGQKqstiariakllkrprtlfernvstkrssvfsALNYTIIVASISSDS 327
Cdd:PRK06793 184 INVI-SLVGERGREVKDFIRKE--------LGEE-------------------------------GMRKSVVVVATSDES 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 328 APIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPgreaYPGDVFYLHS---RLLERAAQMSDav 404
Cdd:PRK06793 224 HLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP----IGGKTLLMESymkKLLERSGKTQK-- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 405 ggGSLTALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQ 484
Cdd:PRK06793 298 --GSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSI 375
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 11466328 485 YREVMEFAKFGASLDAETKRQL----NRGARLVELLKQGQ--YVPLEVSVQIV 531
Cdd:PRK06793 376 YKENELYFKLGTIQENAENAYIfeckNKVEGINTFLKQGRsdSFQFDDIVEAM 428
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
134-461 |
3.62e-18 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 84.97 E-value: 3.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 134 INVGIGLLGRVIDPLGNVLDDPTRPVelnksPKDdlfrnyyigrivtgysrPVEIQAPGI--IVRKSVNKPLLTGLNCVD 211
Cdd:cd01135 4 LPVSEDMLGRIFNGSGKPIDGGPPIL-----PED-----------------YLDINGPPInpVARIYPEEMIQTGISAID 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 212 SMVPIGLGQRELIIGDRQVGKTAVAIdMILNQAflneTLRNSllSSEGAVVnkllpskpcyciYVGIGQKQSTiariAKL 291
Cdd:cd01135 62 VMNTLVRGQKLPIFSGSGLPHNELAA-QIARQA----GVVGS--EENFAIV------------FAAMGVTMEE----ARF 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 292 LKRPrtlFERNVSTKRSSVFsaLNytiivasISSDSAPIQFLAPYTGCTVGELFR-DSGSNAVIVYDDLSKQAVAYRQMS 370
Cdd:cd01135 119 FKDD---FEETGALERVVLF--LN-------LANDPTIERIITPRMALTTAEYLAyEKGKHVLVILTDMTNYAEALREVS 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 371 LLLRRPPGREAYPGdvfYLHSRL---LERAAQMSDAvgGGSLTALPIIeTMAN-DVSAYIPTNVISITDGQIFLETELFN 446
Cdd:cd01135 187 AAREEVPGRRGYPG---YMYTDLatiYERAGRVEGR--KGSITQIPIL-TMPNdDITHPIPDLTGYITEGQIYLDRDLHN 260
|
330
....*....|....*
gi 11466328 447 QGIRPAINVGLSVSR 461
Cdd:cd01135 261 KGIYPPIDVLPSLSR 275
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
52-461 |
7.20e-16 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 80.26 E-value: 7.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 52 VEKVKDGVAFVTRLGNVRFSELVSFIPAPSRLKSlrskgnsnliveGMVVGIEQDYISVIIFGDERFVKVGD-RVRPRGN 130
Cdd:PRK04196 7 VSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRR------------GQVLEVSEDKAVVQVFEGTTGLDLKDtKVRFTGE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 131 IVAINVGIGLLGRVIDPLGNVLDD-----PTRPVELNKSPKDDLFRNYyigrivtgysrPVE-IQapgiivrksvnkpll 204
Cdd:PRK04196 75 PLKLPVSEDMLGRIFDGLGRPIDGgpeiiPEKRLDINGAPINPVAREY-----------PEEfIQ--------------- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 205 TGLNCVDSM--------VPI----GLGQRELiigdrqvgktAVaidMILNQAflneTLRNSllSSEGAVVnkllpskpcy 272
Cdd:PRK04196 129 TGISAIDGLntlvrgqkLPIfsgsGLPHNEL----------AA---QIARQA----KVLGE--EENFAVV---------- 179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 273 ciYVGIGQKQSTiariAKLLKRPrtlFERNVSTKRSSVFsaLNytiivasISSDSAPIQFLAPYTGCTVGE-LFRDSGSN 351
Cdd:PRK04196 180 --FAAMGITFEE----ANFFMED---FEETGALERSVVF--LN-------LADDPAIERILTPRMALTAAEyLAFEKGMH 241
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 352 AVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGdvfYLHSRL---LERAAQMSDAvgGGSLTALPIIeTMAN-DVSAYIP 427
Cdd:PRK04196 242 VLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLatiYERAGRIKGK--KGSITQIPIL-TMPDdDITHPIP 315
|
410 420 430
....*....|....*....|....*....|....
gi 11466328 428 TNVISITDGQIFLETELFNQGIRPAINVGLSVSR 461
Cdd:PRK04196 316 DLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSR 349
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
148-461 |
8.47e-16 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 78.00 E-value: 8.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 148 LGNVLDDPTRPVELNKSPKDDlfrnyYIGRIVTGYSRPVEIQAPgiIVRK-SVNKPLLTGLNCVDSMVPIGLGQRELIIG 226
Cdd:cd01134 11 LGSIFDGIQRPLEVIAETGSI-----FIPRGVNVQRWPVRQPRP--VKEKlPPNVPLLTGQRVLDTLFPVAKGGTAAIPG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 227 DRQVGKTavaidmILNQAflnetlrnslLS--SEGAVVnkllpskpcycIYVGIGQKQSTIARIAK---LLKRPRT---L 298
Cdd:cd01134 84 PFGCGKT------VISQS----------LSkwSNSDVV-----------IYVGCGERGNEMAEVLEefpELKDPITgesL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 299 FERnvstkrssvfsalnyTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPG 378
Cdd:cd01134 137 MER---------------TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPA 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 379 REAYPGdvfYLHSRL---LERAAQMSdAVGG----GSLTALPIIETMANDVSAYIPTNVISITdgQIF--LETELFNQGI 449
Cdd:cd01134 202 EEGYPA---YLGARLaefYERAGRVR-CLGSpgreGSVTIVGAVSPPGGDFSEPVTQATLRIV--QVFwgLDKKLAQRRH 275
|
330
....*....|..
gi 11466328 450 RPAINVGLSVSR 461
Cdd:cd01134 276 FPSINWLISYSK 287
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
100-519 |
1.62e-15 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 79.25 E-value: 1.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 100 VVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDptrpvelnKSPkddLFRNyyigriv 179
Cdd:PRK08927 58 VVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDG--------KGP---LPQG------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 180 tGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTavaidmilnqaflnetlrnSLLSseg 259
Cdd:PRK08927 120 -PVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKS-------------------VLLS--- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 260 avvnKLLPSKPCYCIYVG-IGQkqstiariakllkRPR--------TLFERNVstKRSsvfsalnytIIVASISSDSAPI 330
Cdd:PRK08927 177 ----MLARNADADVSVIGlIGE-------------RGRevqeflqdDLGPEGL--ARS---------VVVVATSDEPALM 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 331 QFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAqmSDAVGGGSLT 410
Cdd:PRK08927 229 RRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAG--PGPIGEGTIT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 411 ALPIIETMANDVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRV--GSA-AQFKPMKQIAGTLkleLAQYRE 487
Cdd:PRK08927 307 GLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTmpGCNdPEENPLVRRARQL---MATYAD 383
|
410 420 430
....*....|....*....|....*....|....*
gi 11466328 488 VMEFAKFGA---SLDAETKRQLNRGARLVELLKQG 519
Cdd:PRK08927 384 MEELIRLGAyraGSDPEVDEAIRLNPALEAFLRQG 418
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
341-584 |
1.06e-14 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 76.75 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 341 VGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAQMSDavGGGSLTALPIIETMAN 420
Cdd:PRK07960 256 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS--GGGSITAFYTVLTEGD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 421 DVSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRvgsaaqfkpmkqiAGTLKLELAQYREVMEFAKFGASLda 500
Cdd:PRK07960 334 DQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR-------------AMTALIDEQHYARVRQFKQLLSSF-- 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 501 etkrQLNRgarlvELLKQGQYVPlevsvqivfvflGISGLLDgrkleNLGQLKSILRSYLRQnykGMVTSSNYLQTANQI 580
Cdd:PRK07960 399 ----QRNR-----DLVSVGAYAK------------GSDPMLD-----KAIALWPQLEAFLQQ---GIFERADWEDSLQAL 449
|
....
gi 11466328 581 DLNF 584
Cdd:PRK07960 450 ERIF 453
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
296-466 |
1.07e-13 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 73.60 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 296 RTLFERNVSTKRSSVFsaLNytiivasISSDSAPIQFLAPYTGCTVGE-LFRDSGSNAVIVYDDLSKQAVAYRQMSLLLR 374
Cdd:TIGR01040 201 KQDFEENGSMERVCLF--LN-------LANDPTIERIITPRLALTTAEyLAYQCEKHVLVILTDMSSYADALREVSAARE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 375 RPPGREAYPGDVFYLHSRLLERAAQMSDAvgGGSLTALPIIeTMAN-DVSAYIPTNVISITDGQIFLETELFNQGIRPAI 453
Cdd:TIGR01040 272 EVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPIL-TMPNdDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPI 348
|
170
....*....|...
gi 11466328 454 NVGLSVSRVGSAA 466
Cdd:TIGR01040 349 NVLPSLSRLMKSA 361
|
|
| ATP-synt_F1_V1_A1_AB_FliI_C |
cd01429 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
471-530 |
3.25e-13 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349744 [Multi-domain] Cd Length: 70 Bit Score: 64.77 E-value: 3.25e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11466328 471 MKQIAGTLKLELAQYREVMEFAKFGA--SLDAETKRQLNRGARLVELLKQGQYVPLEVSVQI 530
Cdd:cd01429 1 HKAVARGFKAILAQYRELRDIVAIVGddALSEADKKTLSRGRRLEEFLQQGQFEPETIEDTL 62
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
274-535 |
6.18e-10 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 62.35 E-value: 6.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 274 IYVGIGQKQSTIARIAK---LLKRPRT---LFERnvstkrssvfsalnyTIIVASISSDSAPIQFLAPYTGCTVGELFRD 347
Cdd:PRK14698 686 IYIGCGERGNEMTDVLEefpKLKDPKTgkpLMER---------------TVLIANTSNMPVAAREASIYTGITIAEYFRD 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 348 SGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGdvfYLHSRLLE------RAAQMSDAVGGGSLTALPIIETMAND 421
Cdd:PRK14698 751 MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEfyeragRVVTLGSDYRVGSVSVIGAVSPPGGD 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 422 VSAYIPTNVISITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQ----------FKPMKQIAGTLKLELAQYREVMEF 491
Cdd:PRK14698 828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKdwwhknvdpeWKAMRDKAMELLQKEAELQEIVRI 907
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 11466328 492 AkfGASLDAETKRQLNRGARLV--ELLKQ------GQYVPLEVSVQIVFVFL 535
Cdd:PRK14698 908 V--GPDALPERERAILLVARMLreDYLQQdafdevDTYCPPEKQVTMMRVLL 957
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
100-440 |
6.99e-09 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 58.12 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 100 VVGIEQDYISVIIFGDERFVKVGDRVRPRGNIVAINVGIGLLGRVIDPLGNVLDDPTRPVElnkspkddlfrnyyigriv 179
Cdd:PRK02118 42 VIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEG------------------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 180 tgysRPVEIQAPgiivrkSVNKplltglncVDSMVPiglgqRELIigdrqvgktAVAIDMIlnqaFLNETLRNS----LL 255
Cdd:PRK02118 103 ----EPIEIGGP------SVNP--------VKRIVP-----REMI---------RTGIPMI----DVFNTLVESqkipIF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 256 SSEGAVVNKLLpskpcyciyVGIG-QKQSTIARIAKL-LKRPRTLFERNVSTKRSsvfsALNYTIIVASISSDSAPIQFL 333
Cdd:PRK02118 147 SVSGEPYNALL---------ARIAlQAEADIIILGGMgLTFDDYLFFKDTFENAG----ALDRTVMFIHTASDPPVECLL 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 334 APYTGCTVGELFRDSGSNAVIVY-DDLSKQAVAYRQMSLLLRRPPGREAYPGDvfyLHSRLLERAAQMSDAVGGGSLTAL 412
Cdd:PRK02118 214 VPDMALAVAEKFALEGKKKVLVLlTDMTNFADALKEISITMDQIPSNRGYPGS---LYSDLASRYEKAVDFEDGGSITII 290
|
330 340
....*....|....*....|....*...
gi 11466328 413 PIIETMANDVSAYIPTNVISITDGQIFL 440
Cdd:PRK02118 291 AVTTMPGDDVTHPVPDNTGYITEGQFYL 318
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
292-411 |
6.90e-08 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 55.56 E-value: 6.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11466328 292 LKRPRT---LFERnvstkrssvfsalnyTIIVASISS-----DSAPIqflapYTGCTVGELFRDSGSNAVIVYDDLSKQA 363
Cdd:PRK04192 278 LIDPKTgrpLMER---------------TVLIANTSNmpvaaREASI-----YTGITIAEYYRDMGYDVLLMADSTSRWA 337
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 11466328 364 VAYRQMSLLLRRPPGREAYPGdvfYLHSRL---LERAAQMSdAVGG--GSLTA 411
Cdd:PRK04192 338 EALREISGRLEEMPGEEGYPA---YLASRLaefYERAGRVK-TLGGeeGSVTI 386
|
|
| |
