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Conserved domains on  [gi|14251207|ref|NP_061868|]
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RNA helicase Mov10l1 isoform 1 [Homo sapiens]

Protein Classification

DEAD/DEAH box helicase; DEAD/DEAH box helicase family protein( domain architecture ID 13030947)

DEAD/DEAH box containing ATP-dependent helicase catalyzes the unwinding of DNA or RNA, with similarity to RNA helicase Aquarius; DEAD/DEAH box containing ATP-dependent helicase family protein may catalyze the unwinding of DNA or RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DEXXQc_Mov10L1 cd18078
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ...
 744-973 4.15e-156

DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


:

Pssm-ID: 350836 [Multi-domain]  Cd Length: 230  Bit Score: 465.31  E-value: 4.15e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  744 VLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPAT 823
Cdd:cd18078    1 DLNELQKEAVKRILGGECRPLPYILFGPPGTGKTVTIIEAILQVVYNLPRSRILVCAPSNSAADLVTSRLHESKVLKPGD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  824 MVRVNATCRFEEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLM 903
Cdd:cd18078   81 MVRLNAVNRFESTVIDARKLYCRLGEDLSKASRHRIVISTCSTAGLLYQMGLPVGHFTHVFVDEAGQATEPESLIPLGLI 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  904 SDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
Cdd:cd18078  161 SSRDGQIILAGDPMQLGPVIKSRLASAYGLGVSFLERLMNRPLYLRDPNRFGESGGYNPLLVTKLVDNYR 230
SF1_C_Upf1 cd18808
C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family ...
 974-1164 1.75e-61

C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


:

Pssm-ID: 350195 [Multi-domain]  Cd Length: 184  Bit Score: 207.86  E-value: 1.75e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  974 SHEALLMLPSRLFYHRELEVCADptvVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLahs 1053
Cdd:cd18808    1 MHPEISEFPSKLFYEGKLKAGVS---VAARLNPPPLPGPSKPLVFVDVSGGEEREESGTSKSNEAEAELVVELVKYL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1054 ISSQVSASDIGVITPYRKQVEKIRILLRNV--DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEddryfLGFLSNSKR 1131
Cdd:cd18808   75 LKSGVKPSSIGVITPYRAQVALIRELLRKRggLLEDVEVGTVDNFQGREKDVIILSLVRSNESGGS-----IGFLSDPRR 149

                        170       180       190
                 ....*....|....*....|....*....|...
gi 14251207 1132 FNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
Cdd:cd18808  150 LNVALTRAKRGLIIVGNPDTLSKDPLWKKLLEY 182
 
Name Accession Description Interval E-value
DEXXQc_Mov10L1 cd18078
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ...
 744-973 4.15e-156

DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350836 [Multi-domain]  Cd Length: 230  Bit Score: 465.31  E-value: 4.15e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  744 VLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPAT 823
Cdd:cd18078    1 DLNELQKEAVKRILGGECRPLPYILFGPPGTGKTVTIIEAILQVVYNLPRSRILVCAPSNSAADLVTSRLHESKVLKPGD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  824 MVRVNATCRFEEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLM 903
Cdd:cd18078   81 MVRLNAVNRFESTVIDARKLYCRLGEDLSKASRHRIVISTCSTAGLLYQMGLPVGHFTHVFVDEAGQATEPESLIPLGLI 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  904 SDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
Cdd:cd18078  161 SSRDGQIILAGDPMQLGPVIKSRLASAYGLGVSFLERLMNRPLYLRDPNRFGESGGYNPLLVTKLVDNYR 230
SF1_C_Upf1 cd18808
C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family ...
 974-1164 1.75e-61

C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350195 [Multi-domain]  Cd Length: 184  Bit Score: 207.86  E-value: 1.75e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  974 SHEALLMLPSRLFYHRELEVCADptvVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLahs 1053
Cdd:cd18808    1 MHPEISEFPSKLFYEGKLKAGVS---VAARLNPPPLPGPSKPLVFVDVSGGEEREESGTSKSNEAEAELVVELVKYL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1054 ISSQVSASDIGVITPYRKQVEKIRILLRNV--DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEddryfLGFLSNSKR 1131
Cdd:cd18808   75 LKSGVKPSSIGVITPYRAQVALIRELLRKRggLLEDVEVGTVDNFQGREKDVIILSLVRSNESGGS-----IGFLSDPRR 149

                        170       180       190
                 ....*....|....*....|....*....|...
gi 14251207 1132 FNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
Cdd:cd18808  150 LNVALTRAKRGLIIVGNPDTLSKDPLWKKLLEY 182
DNA2 COG1112
Superfamily I DNA and/or RNA helicase [Replication, recombination and repair];
854-1164 3.51e-58

Superfamily I DNA and/or RNA helicase [Replication, recombination and repair];


Pssm-ID: 440729 [Multi-domain]  Cd Length: 819  Bit Score: 216.53  E-value: 3.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  854 ASRFRIIITTCSSSGLFyqIGVRVGHFTHVFVDEAGQASEPECLIPLGLmsdiSGQIVLAGDPMQLGPViksrlamaygl 933
Cdd:COG1112  532 LELAPVVGMTPASVARL--LPLGEGSFDLVIIDEASQATLAEALGALAR----AKRVVLVGDPKQLPPV----------- 594

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  934 nvSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVvtsllgwEKLPKKG 1013
Cdd:COG1112  595 --VFGEEAEEVAEEGLDESLLDRLLARLPERGVMLREHYRMHPEIIAFSNRLFYDGKLVPLPSPKA-------RRLADPD 665

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1014 FPLIFHGVRGSEAREGKSpsWFNPAEAVQVLRyccLLAHSISSQVSASDIGVITPYRKQVEKIRILLRN---VDLMDIKV 1090
Cdd:COG1112  666 SPLVFIDVDGVYERRGGS--RTNPEEAEAVVE---LVRELLEDGPDGESIGVITPYRAQVALIRELLREalgDGLEPVFV 740

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14251207 1091 GSVEEFQGQEYLVIIISTVRSNEdrfEDDRYFLGFLSNS-KRFNVAITRPKALLIVLGNPHVLVRDP---CFGALLEY 1164
Cdd:COG1112  741 GTVDRFQGDERDVIIFSLVYSND---EDVPRNFGFLNGGpRRLNVAVSRARRKLIVVGSRELLDSDPstpALKRLLEY 815
TIGR00376 TIGR00376
DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of ...
 737-1171 4.51e-57

DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273041 [Multi-domain]  Cd Length: 636  Bit Score: 209.67  E-value: 4.51e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    737 KMEFFNPVLNENQKLAVKRILSGDCRplpYILFGPPGTGKTVTIIEAVLQVhfALPDSRILVCAPSNSAAD--------- 807
Cdd:TIGR00376  150 DFQFFDPNLNESQKEAVLFALSSKDL---FLIHGPPGTGKTRTVVELIRQL--VKRGLRVLVTAPSNIAVDnllerlalc 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    808 -LVCLRL-HESKVLQ-------PATMVRVNATCRFEEIV--IDAV----------KPYCRDG------------------ 848
Cdd:TIGR00376  225 dQKIVRLgHPARLLKsnkqhslDYLIENHPKYQIVADIRekIDELieernkktkpSPQKRRGlsdikilrkalkkrearg 304

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    849 -EDIWKASRFRIIITTCSSSGLF---YQIGVRVGH----------------------FTHVFVDEAGQASEPECLIPLgl 902
Cdd:TIGR00376  305 iESLKIASMAEWIETNKSIDRLLkllPESEERIMNeilaesdatnsmagseilngqyFDVAVIDEASQAMEPSCLIPL-- 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    903 msdISGQ-IVLAGDPMQLGPVIKSRlaMAYGLNVSFLERLMSRpayqrdenafgacgahNPLLVTKLVKNYRSHEALLML 981
Cdd:TIGR00376  383 ---LKARkLILAGDHKQLPPTILSH--DAEELSLTLFERLIKE----------------YPERSRTLNVQYRMNQKIMEF 441

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    982 PSRLFYHRELEvcADPTVVTSLLgwEKLPKK-----------GFPLIF---HGVRGSEAREGKSPSWFNPAEAVQVLRYC 1047
Cdd:TIGR00376  442 PSREFYNGKLT--AHESVANILL--RDLPKVeateseddletGIPLLFidtSGCELFELKEADSTSKYNPGEAELVSEII 517

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1048 CLLahsISSQVSASDIGVITPYRKQVEKIRILLRNvDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRfeddryFLGFLS 1127
Cdd:TIGR00376  518 QAL---VKMGVPANDIGVITPYDAQVDLLRQLLEH-RHIDIEVSSVDGFQGREKEVIIISFVRSNRKG------EVGFLK 587

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....
gi 14251207   1128 NSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGVY 1171
Cdd:TIGR00376  588 DLRRLNVALTRARRKLIVIGDSRTLSNHKFYKRLIEWCKQHGEV 631
AAA_12 pfam13087
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 933-1149 1.02e-54

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.


Pssm-ID: 463780 [Multi-domain]  Cd Length: 196  Bit Score: 188.91  E-value: 1.02e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    933 LNVSFLERLMSrpayqrdenafgacgaHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEvCADPTVVTSLLGWEKLPKK 1012
Cdd:pfam13087    1 LDRSLFERLQE----------------LGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLK-DGPSVAERPLPDDFHLPDP 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1013 GFPLIFHGVRGSEAREGKS-PSWFNPAEAVQVLRYCCLLAHSISSQvsASDIGVITPYRKQVEKIRILLRNVDLM--DIK 1089
Cdd:pfam13087   64 LGPLVFIDVDGSEEEESDGgTSYSNEAEAELVVQLVEKLIKSGPEE--PSDIGVITPYRAQVRLIRKLLKRKLGGklEIE 141

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1090 VGSVEEFQGQEYLVIIISTVRSNEDRfeddryFLGFLSNSKRFNVAITRPKALLIVLGNP 1149
Cdd:pfam13087  142 VNTVDGFQGREKDVIIFSCVRSNEKG------GIGFLSDPRRLNVALTRAKRGLIIVGNA 195
AAA_11 pfam13086
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 749-926 8.28e-24

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.


Pssm-ID: 404072 [Multi-domain]  Cd Length: 248  Bit Score: 102.04  E-value: 8.28e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    749 QKLAVKRILSgdcRPLPYILFGPPGTGKTVTIIEAVLQVHF-----ALPDSRILVCAPSNSAADLVCLRLHESKVLQPAT 823
Cdd:pfam13086    2 QREAIRSALS---SSHFTLIQGPPGTGKTTTIVELIRQLLSypatsAAAGPRILVCAPSNAAVDNILERLLRKGQKYGPK 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    824 MVRVNAtcrfEEIVIDAVKPYCRD-------------------------------------------------------- 847
Cdd:pfam13086   79 IVRIGH----PAAISEAVLPVSLDylvesklnneedaqivkdiskeleklakalrafekeiivekllksrnkdkskleqe 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    848 -----------GEDIWKASRF---------RIIITTCSSSG---LFYQIGVRVghfthVFVDEAGQASEPECLIPLglms 904
Cdd:pfam13086  155 rrklrserkelRKELRRREQSlereildeaQIVCSTLSGAGsrlLSSLANFDV-----VIIDEAAQALEPSTLIPL---- 225

                          250       260
                   ....*....|....*....|....
gi 14251207    905 dISG--QIVLAGDPMQLGPVIKSR 926
Cdd:pfam13086  226 -LRGpkKVVLVGDPKQLPPTVISK 248
RecD COG0507
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ...
 728-922 4.45e-10

ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440273 [Multi-domain]  Cd Length: 514  Bit Score: 63.84  E-value: 4.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  728 DEIQTPKARKMEFFNPVLNENQKLAVKRILSGdcRPLpYILFGPPGTGKTvTIIEAVLQVHFALPDsRILVCAPSNSAAd 807
Cdd:COG0507  108 ADVEAALAALEPRAGITLSDEQREAVALALTT--RRV-SVLTGGAGTGKT-TTLRALLAALEALGL-RVALAAPTGKAA- 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  808 lvcLRLHESKVLQPATMvrvnatCRFEEIVIDAVKPYCRDGEDIWKAsrfRIIIttcsssglfyqigvrvghfthvfVDE 887
Cdd:COG0507  182 ---KRLSESTGIEARTI------HRLLGLRPDSGRFRHNRDNPLTPA---DLLV-----------------------VDE 226

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 14251207  888 AGqasepecLIPLGLMSDI-------SGQIVLAGDPMQLGPV 922
Cdd:COG0507  227 AS-------MVDTRLMAALlealpraGARLILVGDPDQLPSV 261
DEXDc smart00487
DEAD-like helicases superfamily;
739-888 7.60e-09

DEAD-like helicases superfamily;


Pssm-ID: 214692 [Multi-domain]  Cd Length: 201  Bit Score: 57.12  E-value: 7.60e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207     739 EFFNPVLNENQKLAVKRILSGDCRplpYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLheSKV 818
Cdd:smart00487    3 KFGFEPLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWAEEL--KKL 77

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14251207     819 LQPATMVRVNATCRFEEividavkpycRDGEDIWKASRFRIIITTCSS-SGLFYQIGVRVGHFTHVFVDEA 888
Cdd:smart00487   78 GPSLGLKVVGLYGGDSK----------REQLRKLESGKTDILVTTPGRlLDLLENDKLSLSNVDLVILDEA 138
 
Name Accession Description Interval E-value
DEXXQc_Mov10L1 cd18078
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ...
 744-973 4.15e-156

DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350836 [Multi-domain]  Cd Length: 230  Bit Score: 465.31  E-value: 4.15e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  744 VLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPAT 823
Cdd:cd18078    1 DLNELQKEAVKRILGGECRPLPYILFGPPGTGKTVTIIEAILQVVYNLPRSRILVCAPSNSAADLVTSRLHESKVLKPGD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  824 MVRVNATCRFEEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLM 903
Cdd:cd18078   81 MVRLNAVNRFESTVIDARKLYCRLGEDLSKASRHRIVISTCSTAGLLYQMGLPVGHFTHVFVDEAGQATEPESLIPLGLI 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  904 SDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
Cdd:cd18078  161 SSRDGQIILAGDPMQLGPVIKSRLASAYGLGVSFLERLMNRPLYLRDPNRFGESGGYNPLLVTKLVDNYR 230
DEXXQc_Helz-like cd18038
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ...
 744-973 4.39e-112

DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350796 [Multi-domain]  Cd Length: 229  Bit Score: 349.23  E-value: 4.39e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  744 VLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHeSKVLQPAT 823
Cdd:cd18038    1 ELNDEQKLAVRNIVTGTSRPPPYIIFGPPGTGKTVTLVEAILQVLRQPPEARILVCAPSNSAADLLAERLL-NALVTKRE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  824 MVRVNATCRFEEIVIDAVKPYCRDGED-------IWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPEC 896
Cdd:cd18038   80 ILRLNAPSRDRASVPPELLPYCNSKAEgtfrlpsLEELKKYRIVVCTLMTAGRLVQAGVPNGHFTHIFIDEAGQATEPEA 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14251207  897 LIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDenafgacGAHNPLLVTKLVKNYR 973
Cdd:cd18038  160 LIPLSELASKNTQIVLAGDPKQLGPVVRSPLARKYGLGKSLLERLMERPLYYKD-------GEYNPSYITKLLKNYR 229
SF1_C_Upf1 cd18808
C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family ...
 974-1164 1.75e-61

C-terminal helicase domain of Upf1-like family helicases; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350195 [Multi-domain]  Cd Length: 184  Bit Score: 207.86  E-value: 1.75e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  974 SHEALLMLPSRLFYHRELEVCADptvVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLahs 1053
Cdd:cd18808    1 MHPEISEFPSKLFYEGKLKAGVS---VAARLNPPPLPGPSKPLVFVDVSGGEEREESGTSKSNEAEAELVVELVKYL--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1054 ISSQVSASDIGVITPYRKQVEKIRILLRNV--DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEddryfLGFLSNSKR 1131
Cdd:cd18808   75 LKSGVKPSSIGVITPYRAQVALIRELLRKRggLLEDVEVGTVDNFQGREKDVIILSLVRSNESGGS-----IGFLSDPRR 149

                        170       180       190
                 ....*....|....*....|....*....|...
gi 14251207 1132 FNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
Cdd:cd18808  150 LNVALTRAKRGLIIVGNPDTLSKDPLWKKLLEY 182
DNA2 COG1112
Superfamily I DNA and/or RNA helicase [Replication, recombination and repair];
854-1164 3.51e-58

Superfamily I DNA and/or RNA helicase [Replication, recombination and repair];


Pssm-ID: 440729 [Multi-domain]  Cd Length: 819  Bit Score: 216.53  E-value: 3.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  854 ASRFRIIITTCSSSGLFyqIGVRVGHFTHVFVDEAGQASEPECLIPLGLmsdiSGQIVLAGDPMQLGPViksrlamaygl 933
Cdd:COG1112  532 LELAPVVGMTPASVARL--LPLGEGSFDLVIIDEASQATLAEALGALAR----AKRVVLVGDPKQLPPV----------- 594

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  934 nvSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVvtsllgwEKLPKKG 1013
Cdd:COG1112  595 --VFGEEAEEVAEEGLDESLLDRLLARLPERGVMLREHYRMHPEIIAFSNRLFYDGKLVPLPSPKA-------RRLADPD 665

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1014 FPLIFHGVRGSEAREGKSpsWFNPAEAVQVLRyccLLAHSISSQVSASDIGVITPYRKQVEKIRILLRN---VDLMDIKV 1090
Cdd:COG1112  666 SPLVFIDVDGVYERRGGS--RTNPEEAEAVVE---LVRELLEDGPDGESIGVITPYRAQVALIRELLREalgDGLEPVFV 740

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14251207 1091 GSVEEFQGQEYLVIIISTVRSNEdrfEDDRYFLGFLSNS-KRFNVAITRPKALLIVLGNPHVLVRDP---CFGALLEY 1164
Cdd:COG1112  741 GTVDRFQGDERDVIIFSLVYSND---EDVPRNFGFLNGGpRRLNVAVSRARRKLIVVGSRELLDSDPstpALKRLLEY 815
TIGR00376 TIGR00376
DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of ...
 737-1171 4.51e-57

DNA helicase, putative; The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273041 [Multi-domain]  Cd Length: 636  Bit Score: 209.67  E-value: 4.51e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    737 KMEFFNPVLNENQKLAVKRILSGDCRplpYILFGPPGTGKTVTIIEAVLQVhfALPDSRILVCAPSNSAAD--------- 807
Cdd:TIGR00376  150 DFQFFDPNLNESQKEAVLFALSSKDL---FLIHGPPGTGKTRTVVELIRQL--VKRGLRVLVTAPSNIAVDnllerlalc 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    808 -LVCLRL-HESKVLQ-------PATMVRVNATCRFEEIV--IDAV----------KPYCRDG------------------ 848
Cdd:TIGR00376  225 dQKIVRLgHPARLLKsnkqhslDYLIENHPKYQIVADIRekIDELieernkktkpSPQKRRGlsdikilrkalkkrearg 304

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    849 -EDIWKASRFRIIITTCSSSGLF---YQIGVRVGH----------------------FTHVFVDEAGQASEPECLIPLgl 902
Cdd:TIGR00376  305 iESLKIASMAEWIETNKSIDRLLkllPESEERIMNeilaesdatnsmagseilngqyFDVAVIDEASQAMEPSCLIPL-- 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    903 msdISGQ-IVLAGDPMQLGPVIKSRlaMAYGLNVSFLERLMSRpayqrdenafgacgahNPLLVTKLVKNYRSHEALLML 981
Cdd:TIGR00376  383 ---LKARkLILAGDHKQLPPTILSH--DAEELSLTLFERLIKE----------------YPERSRTLNVQYRMNQKIMEF 441

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    982 PSRLFYHRELEvcADPTVVTSLLgwEKLPKK-----------GFPLIF---HGVRGSEAREGKSPSWFNPAEAVQVLRYC 1047
Cdd:TIGR00376  442 PSREFYNGKLT--AHESVANILL--RDLPKVeateseddletGIPLLFidtSGCELFELKEADSTSKYNPGEAELVSEII 517

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1048 CLLahsISSQVSASDIGVITPYRKQVEKIRILLRNvDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRfeddryFLGFLS 1127
Cdd:TIGR00376  518 QAL---VKMGVPANDIGVITPYDAQVDLLRQLLEH-RHIDIEVSSVDGFQGREKEVIIISFVRSNRKG------EVGFLK 587

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....
gi 14251207   1128 NSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGVY 1171
Cdd:TIGR00376  588 DLRRLNVALTRARRKLIVIGDSRTLSNHKFYKRLIEWCKQHGEV 631
AAA_12 pfam13087
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 933-1149 1.02e-54

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.


Pssm-ID: 463780 [Multi-domain]  Cd Length: 196  Bit Score: 188.91  E-value: 1.02e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    933 LNVSFLERLMSrpayqrdenafgacgaHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEvCADPTVVTSLLGWEKLPKK 1012
Cdd:pfam13087    1 LDRSLFERLQE----------------LGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLK-DGPSVAERPLPDDFHLPDP 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1013 GFPLIFHGVRGSEAREGKS-PSWFNPAEAVQVLRYCCLLAHSISSQvsASDIGVITPYRKQVEKIRILLRNVDLM--DIK 1089
Cdd:pfam13087   64 LGPLVFIDVDGSEEEESDGgTSYSNEAEAELVVQLVEKLIKSGPEE--PSDIGVITPYRAQVRLIRKLLKRKLGGklEIE 141

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207   1090 VGSVEEFQGQEYLVIIISTVRSNEDRfeddryFLGFLSNSKRFNVAITRPKALLIVLGNP 1149
Cdd:pfam13087  142 VNTVDGFQGREKDVIIFSCVRSNEKG------GIGFLSDPRRLNVALTRAKRGLIIVGNA 195
DEXXQc_UPF1 cd18039
DEXXQ-box helicase domain of UPF1; UPF1 (also called RNA Helicase And ATPase, Regulator Of ...
 745-941 2.33e-39

DEXXQ-box helicase domain of UPF1; UPF1 (also called RNA Helicase And ATPase, Regulator Of Nonsense Transcripts, or ATP-Dependent Helicase RENT1) is an RNA-dependent helicase and ATPase required for nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. It is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. It is recruited by release factors to stalled ribosomes together with the SMG1C protein kinase complex to form the transient SURF (SMG1-UPF1-eRF1-eRF3) complex. In EJC-dependent NMD, the SURF complex associates with the exon junction complex (EJC) located downstream from the termination codon through UPF2 and allows the formation of an UPF1-UPF2-UPF3 surveillance complex which is believed to activate NMD. Diseases associated with UPF1 include juvenile amyotrophic lateral sclerosis and epidermolysis bullosa, junctional, non-Herlitz type. UPF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350797 [Multi-domain]  Cd Length: 234  Bit Score: 146.24  E-value: 2.33e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSgdcRPLPYILfGPPGTGKTVTIIEAVLQVHFALPdSRILVCAPSNSAADLVCLRLHES--KVlqpa 822
Cdd:cd18039    2 LNHSQVDAVKTALQ---RPLSLIQ-GPPGTGKTVTSATIVYHLVKQGN-GPVLVCAPSNVAVDQLTEKIHQTglKV---- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  823 tmVRVNATCR-----------FEEIVIDAVKPYCRDGEDIWKA----------SRFR---------------IIITTCSS 866
Cdd:cd18039   73 --VRLCAKSReavespvsflaLHNQVRNLDSAEKLELLKLLKLetgelssadeKRYRklkrkaerellrnadVICCTCVG 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 14251207  867 SGlfyqiGVRVG--HFTHVFVDEAGQASEPECLIPLGLMSDisgQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERL 941
Cdd:cd18039  151 AG-----DPRLSkmKFRTVLIDEATQATEPECLIPLVHGAK---QVILVGDHCQLGPVVMCKKAAKAGLSQSLFERL 219
DEXXQc_SMUBP2 cd18044
DEXXQ-box helicase domain of SMUBP2; SMUBP2 (also called immunoglobulin mu-binding protein 2, ...
 745-973 4.29e-37

DEXXQ-box helicase domain of SMUBP2; SMUBP2 (also called immunoglobulin mu-binding protein 2, or IGHMBP2) is a 5' to 3' helicase that unwinds RNA and DNA duplexes in an ATP-dependent reaction. It is a DNA-binding protein specific to 5'-phosphorylated single-stranded guanine-rich sequence (5'-GGGCT-3') related to the immunoglobulin mu chain switch region. The IGHMBP2 gene is responsible for Charcot-Marie-Tooth disease (CMT) type 2S and spinal muscular atrophy with respiratory distress type 1 (SMARD1). It is also thought to play a role in frontotemporal dementia (FTD) with amyotrophic lateral sclerosis (ALS) and major depressive disorder (MDD). SMUBP2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350802 [Multi-domain]  Cd Length: 191  Bit Score: 138.13  E-value: 4.29e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSGdcRPLpYILFGPPGTGKTVTIIEAVLQVhfALPDSRILVCAPSNSAADLVCLRLheskVLQPATM 824
Cdd:cd18044    2 LNDSQKEAVKFALSQ--KDV-ALIHGPPGTGKTTTVVEIILQA--VKRGEKVLACAPSNIAVDNLVERL----VALKVKV 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  825 VRVNATCRfeeiVIDAVKPYCRDgediwKASRFRIIITTCSSSGLFyqiGVRVG-HFTHVFVDEAGQASEPECLIPLGLM 903
Cdd:cd18044   73 VRIGHPAR----LLESVLDHSLD-----ALVAAQVVLATNTGAGSR---QLLPNeLFDVVVIDEAAQALEASCWIPLLKA 140

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  904 SdisgQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRpayqrdenafgacgaHNPLLVTKLVKNYR 973
Cdd:cd18044  141 R----RCILAGDHKQLPPTILSDKAARGGLGVTLFERLVNL---------------YGESVVRMLTVQYR 191
DEXXQc_HELZ cd18077
DEXXQ-box helicase domain of HELZ; Helicase with zinc finger (HELZ) acts as a helicase that ...
 745-941 6.96e-36

DEXXQ-box helicase domain of HELZ; Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. HELZ is a member of the family I class of RNA helicases of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350835 [Multi-domain]  Cd Length: 226  Bit Score: 136.08  E-value: 6.96e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSGDCRPLPYILF-GPPGTGKTVTIIEAVLQVhFALPDSRILVCAPSNSAADLVC---LRLHESKVLQ 820
Cdd:cd18077    2 LNAKQKEAVLAITTPLSIQLPPVLLiGPFGTGKTFTLAQAVKHI-LQQPETRILICTHSNSAADLYIkeyLHPYVETGNP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  821 PATMVRVNATCRFEEIVIDAVKPYC---RDG-------EDIWKAsrfRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQ 890
Cdd:cd18077   81 RARPLRVYYRNRWVKTVHPVVQKYClidEHGtfrmptrEDVMRH---RVVVVTLSTSQYLCQLDLEPGFFTHILLDEAAQ 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 14251207  891 ASEPECLIPLGLMSDiSGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERL 941
Cdd:cd18077  158 AMECEAIMPLALATK-STRIVLAGDHMQLSPEVYSEFARERNLHISLLERL 207
DEXXQc_SETX cd18042
DEXXQ-box helicase domain of SETX; The RNA/DNA helicase senataxin (SETX) plays a role in ...
 745-943 6.37e-30

DEXXQ-box helicase domain of SETX; The RNA/DNA helicase senataxin (SETX) plays a role in transcription, neurogenesis, and antiviral response. SEXT is an R-loop-associated protein that is thought to function as an RNA/DNA helicase. R-loops consist of RNA/DNA hybrids, formed during transcription when nascent RNA hybridizes to the DNA template strand, displacing the non-template DNA strand. Mutations in SETX are linked to two neurodegenerative disorders: ataxia with oculomotor apraxia type 2 (AOA2) and amyotrophic lateral sclerosis type 4 (ALS4). S. cerevisiae homolog splicing endonuclease 1 (Sen1) is an exclusively nuclear protein, important for nucleolar organization. S. cerevisiae Sen1 and its ortholog, the Schizosaccharomyces pombe Sen1, share conserved domains and belong to the family I class of helicases. Both proteins translocate 5' to 3' and unwind both DNA and RNA duplexes and also RNA/DNA hybrids in vitro. SETX is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 438712 [Multi-domain]  Cd Length: 218  Bit Score: 118.47  E-value: 6.37e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSGDcrplPYI--LFGPPGTGKTVTIIEAVLQVHFALPDS-----------------------RILVC 799
Cdd:cd18042    1 LNESQLEAIASALQNS----PGItlIQGPPGTGKTKTIVGILSVLLAGKYRKyyekvkkklrklqrnlnnkkkknRILVC 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  800 APSNSAADLVCLRLHESKVLQPatmvrvNATCRFEEIVidavkpycRDGEDIWKASRFR---IIITTCSSSG-LFYQIGV 875
Cdd:cd18042   77 APSNAAVDEIVLRLLSEGFLDG------DGRSYKPNVV--------RVGRQELRASILNeadIVCTTLSSSGsDLLESLP 142

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14251207  876 RvgHFTHVFVDEAGQASEPECLIPLGLmsdISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMS 943
Cdd:cd18042  143 R--GFDTVIIDEAAQAVELSTLIPLRL---GCKRLILVGDPKQLPATVFSKVAQKLGYDRSLFERLQL 205
DEXXQc_DNA2 cd18041
DEXXQ-box helicase domain of DNA2; DNA2 (DNA Replication Helicase/Nuclease 2) possesses ...
 745-973 2.65e-28

DEXXQ-box helicase domain of DNA2; DNA2 (DNA Replication Helicase/Nuclease 2) possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5-3 helicase, and endonuclease activities, and is involved in DNA replication and DNA repair in the nucleus and mitochondrion. It is involved in Okazaki fragment processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. It is also involved in 5-end resection of DNA during double-strand break (DSB) repair; it is recruited by BLM and mediates the cleavage of 5-ssDNA, while the 3-ssDNA cleavage is prevented by the presence of RPA. DNA2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350799 [Multi-domain]  Cd Length: 203  Bit Score: 113.48  E-value: 2.65e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSgdCRPLPYILfGPPGTGKTVTIIEAVLQvhFALPDSRILVCAPSNSAADLVCLRLHESKVlqpaTM 824
Cdd:cd18041    2 LNKDQRQAIKKVLN--AKDYALIL-GMPGTGKTTTIAALVRI--LVALGKSVLLTSYTHSAVDNILLKLKKFGV----NF 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  825 VRVNATCR----FEEIVIDAVKPYCRDGEDIWKA-SRFRIIITTCSSsglFYQIGVRVGHFTHVFVDEAGQASEPECLIP 899
Cdd:cd18041   73 LRLGRLKKihpdVQEFTLEAILKSCKSVEELESKyESVSVVATTCLG---INHPIFRRRTFDYCIVDEASQITLPICLGP 149

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14251207  900 LgLMSDisgQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLmsrpayqrdenafgaCGAHnPLLVTKLVKNYR 973
Cdd:cd18041  150 L-RLAK---KFVLVGDHYQLPPLVKSREARELGMDESLFKRL---------------SEAH-PDAVVQLTIQYR 203
DEXXQc_Upf1-like cd17934
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ...
 767-947 1.61e-25

DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 438708 [Multi-domain]  Cd Length: 121  Bit Score: 102.70  E-value: 1.61e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  767 ILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADlvclrlheskvlqpatmvrvnatcrfeeiVIDavkpycr 846
Cdd:cd17934    3 LIQGPPGTGKTTTIAAIVLQLLKGLRGKRVLVTAQSNVAVD-----------------------------NVD------- 46

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  847 dgediwkasrfriiittcsssglfyqigvrvghftHVFVDEAGQASEPECLIPLGLmsdiSGQIVLAGDPMQLGPVIKSR 926
Cdd:cd17934   47 -----------------------------------VVIIDEASQITEPELLIALIR----AKKVVLVGDPKQLPPVVQED 87

                        170       180
                 ....*....|....*....|.
gi 14251207  927 LAMAYGLNVSFLERLMSRPAY 947
Cdd:cd17934   88 HAALLGLSFILSLLLLFRLLL 108
DEXXQc_HELZ2-N cd18076
N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known ...
 744-941 1.94e-24

N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known as PPAR-alpha-interacting complex protein 285 or PRIC285 and PPAR-gamma DBD-interacting protein 1 or PDIP1) acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB, and RXRA. It belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350834 [Multi-domain]  Cd Length: 230  Bit Score: 103.05  E-value: 1.94e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  744 VLNENQKLAVKRIL---SGDCRPLPYILFGPPGTGKTVTIIEAVLQVhFALPDSRILVCAPSNSAADLVC---LRLHESK 817
Cdd:cd18076    1 AGNNKQQLAFNFIAgkpSEARFVPPLLIYGPFGTGKTFTLAMAALEV-IREPGTKVLICTHTNSAADIYIreyFHPYVDK 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  818 VLQPATMVRVNATCRFEEIVIDAVKPYCRDGEDIW--------KASRFRIIITTCSSSglfYQIGVRVGHFTHVFVDEAG 889
Cdd:cd18076   80 GHPEARPLRIKATDRPNAITDPDTITYCCLTKDRQcfrlptrdELDFHNIVITTTAMA---FNLHVLSGFFTHIFIDEAA 156

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 14251207  890 QASEPECLIPLGLMSdISGQIVLAGDPMQLGPVIKSrLAMAYGLNVSFLERL 941
Cdd:cd18076  157 QMLECEALIPLSYAG-PKTRVVLAGDHMQMTPKLFS-VADYNRANHTLLNRL 206
AAA_11 pfam13086
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 749-926 8.28e-24

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.


Pssm-ID: 404072 [Multi-domain]  Cd Length: 248  Bit Score: 102.04  E-value: 8.28e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    749 QKLAVKRILSgdcRPLPYILFGPPGTGKTVTIIEAVLQVHF-----ALPDSRILVCAPSNSAADLVCLRLHESKVLQPAT 823
Cdd:pfam13086    2 QREAIRSALS---SSHFTLIQGPPGTGKTTTIVELIRQLLSypatsAAAGPRILVCAPSNAAVDNILERLLRKGQKYGPK 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    824 MVRVNAtcrfEEIVIDAVKPYCRD-------------------------------------------------------- 847
Cdd:pfam13086   79 IVRIGH----PAAISEAVLPVSLDylvesklnneedaqivkdiskeleklakalrafekeiivekllksrnkdkskleqe 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    848 -----------GEDIWKASRF---------RIIITTCSSSG---LFYQIGVRVghfthVFVDEAGQASEPECLIPLglms 904
Cdd:pfam13086  155 rrklrserkelRKELRRREQSlereildeaQIVCSTLSGAGsrlLSSLANFDV-----VIIDEAAQALEPSTLIPL---- 225

                          250       260
                   ....*....|....*....|....
gi 14251207    905 dISG--QIVLAGDPMQLGPVIKSR 926
Cdd:pfam13086  226 -LRGpkKVVLVGDPKQLPPTVISK 248
DEXXc_HELZ2-C cd18040
C-terminal DEXX-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known ...
 745-941 2.10e-18

C-terminal DEXX-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known as PPAR-alpha-interacting complex protein 285 or PRIC285 and PPAR-gamma DBD-interacting protein 1 or PDIP1) acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB and RXRA. It belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350798 [Multi-domain]  Cd Length: 271  Bit Score: 86.81  E-value: 2.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILsgdCRPLpYILFGPPGTGKTVTII-----------EAVLQVHFALPDSRILVCAPSNSAADLVC--- 810
Cdd:cd18040    2 LNPSQNHAVRTAL---TKPF-TLIQGPPGTGKTVTGVhiaywfakqnrEIQSVSGEGDGGPCVLYCGPSNKSVDVVAell 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  811 LRLHESKVLQ-------------PATMVRVN-------------------------------ATCRFEEIVIDAVKPYCR 846
Cdd:cd18040   78 LKVPGLKILRvyseqietteypiPNEPRHPNkksereskpnselssitlhhrirqpsnphsqQIKAFEARFERTQEKITE 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  847 DGED-----IWKASRFR-----IIITTCSSSGlfyqiGVRVGHFTHV---FVDEAGQASEPECLIPLGLMSDISgQIVLA 913
Cdd:cd18040  158 EDIKtykilIWEARFEEletvdVILCTCSEAA-----SQKMRTHANVkqcIVDECGMCTEPESLIPIVSAPRAE-QVVLI 231

                        250       260
                 ....*....|....*....|....*...
gi 14251207  914 GDPMQLGPVIKSRLAMAYGLNVSFLERL 941
Cdd:cd18040  232 GDHKQLRPVVQNKEAQKLGLGRSLFERY 259
EEXXEc_NFX1 cd17936
EEXXE-box helicase domain of NFX1; Human NFX1 protein was identified as a protein that ...
 745-949 1.20e-13

EEXXE-box helicase domain of NFX1; Human NFX1 protein was identified as a protein that represses class II MHC (major histocompatibility complex) gene expression. NFX1 binds a conserved cis-acting element, termed the X-box, in promoters of human class II MHC genes. The Cys-rich region contains several NFX1-type zinc finger domains. Frequently, a R3H domain is present in the C-terminus, and a RING finger domain and a PAM2 motif are present in the N-terminus. The lack of R3H and PAM2 motifs in the plant proteins indicates functional differences. Plant NFX1-like proteins are proposed to modulate growth and survival by coordinating reactive oxygen species, salicylic acid, further biotic stress and abscisic acid responses. A common feature of all members may be E3 ubiquitin ligase, due to the presence of a RING finger domain, as well as DNA binding. NFX1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350694 [Multi-domain]  Cd Length: 178  Bit Score: 70.27  E-value: 1.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  745 LNENQKLAVKRILSgdcRPLPYILfGPPGTGKT---VTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESkvlQP 821
Cdd:cd17936    2 LDPSQLEALKHALT---SELALIQ-GPPGTGKTflgVKLVRALLQNQDLSITGPILVVCYTNHALDQFLEGLLDF---GP 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  822 ATMVRVNATcrfeeiVIdavkpycrdGEDIWKASRFRiiittcsssGLFYQIGVRVghfthVFVDEAGQASEPE---CLI 898
Cdd:cd17936   75 TKIVRLGAR------VI---------GMTTTGAAKYR---------ELLQALGPKV-----VIVEEAAEVLEAHilaALT 125

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 14251207  899 PlglmsDISgQIVLAGDPMQLGPVIKSRL--AMAYGLNVSFLERL------MSRPAYQR 949
Cdd:cd17936  126 P-----STE-HLILIGDHKQLRPKVNVYEltAKKYNLDVSLFERLvknglpFVTLNVQR 178
DEXXQc_SF1 cd18043
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ...
 746-931 1.89e-10

DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350801 [Multi-domain]  Cd Length: 127  Bit Score: 59.52  E-value: 1.89e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  746 NENQKLAVKRILSGDCrplpYILFGPPGTGKTVTIieAVLQVHFALPDSRILVCAPSNSAADLVclrlheskvlqpatmv 825
Cdd:cd18043    1 DSSQEAAIISARNGKN----VVIQGPPGTGKSQTI--ANIIANALARGKRVLFVSEKKAALDVV---------------- 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  826 rvnatcrfeeividavkpycrdgediwkasRFRIIITTCSSSGLFYQIGvrVGHFTHVFVDEAGQASePECLIPLGLMSD 905
Cdd:cd18043   59 ------------------------------RFPCWIMSPLSVSQYLPLN--RNLFDLVIFDEASQIP-IEEALPALFRGK 105

                        170       180
                 ....*....|....*....|....*.
gi 14251207  906 isgQIVLAGDPMQLGPVIksRLAMAY 931
Cdd:cd18043  106 ---QVVVVGDDKQLPPSI--LLREHY 126
RecD COG0507
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ...
 728-922 4.45e-10

ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440273 [Multi-domain]  Cd Length: 514  Bit Score: 63.84  E-value: 4.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  728 DEIQTPKARKMEFFNPVLNENQKLAVKRILSGdcRPLpYILFGPPGTGKTvTIIEAVLQVHFALPDsRILVCAPSNSAAd 807
Cdd:COG0507  108 ADVEAALAALEPRAGITLSDEQREAVALALTT--RRV-SVLTGGAGTGKT-TTLRALLAALEALGL-RVALAAPTGKAA- 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  808 lvcLRLHESKVLQPATMvrvnatCRFEEIVIDAVKPYCRDGEDIWKAsrfRIIIttcsssglfyqigvrvghfthvfVDE 887
Cdd:COG0507  182 ---KRLSESTGIEARTI------HRLLGLRPDSGRFRHNRDNPLTPA---DLLV-----------------------VDE 226

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 14251207  888 AGqasepecLIPLGLMSDI-------SGQIVLAGDPMQLGPV 922
Cdd:COG0507  227 AS-------MVDTRLMAALlealpraGARLILVGDPDQLPSV 261
EEXXQc_AQR cd17935
EEXXQ-box helicase domain of AQR; Aquarius (AQR) is a multifunctional RNA helicase that binds ...
 753-941 1.11e-09

EEXXQ-box helicase domain of AQR; Aquarius (AQR) is a multifunctional RNA helicase that binds precursor-mRNA introns at a defined position and is part of a pentameric intron-binding complex (IBC). It is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350693 [Multi-domain]  Cd Length: 207  Bit Score: 59.75  E-value: 1.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  753 VKRILSGdCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVclrlheskvlqpatmvrvnatcr 832
Cdd:cd17935   11 IEAIRSG-MQPGLTMVVGPPGTGKTDVAVQIISNLYHNFPNQRTLIVTHSNQALNQL----------------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  833 FEEIVidavKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVG-HFTHVFVDEAGQASEPECLIPLGLMSDISG--- 908
Cdd:cd17935   67 FEKIM----ALDIDERHLLRLGHGAKIIAMTCTHAALKRGELVELGfKYDNILMEEAAQILEIETFIPLLLQNPEDGpnr 142

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 14251207  909 --QIVLAGDPMQLGPVIKSRLAMAYG-LNVSFLERL 941
Cdd:cd17935  143 lkRLIMIGDHHQLPPVIKNMAFQKYSnMEQSLFTRL 178
DEXDc smart00487
DEAD-like helicases superfamily;
739-888 7.60e-09

DEAD-like helicases superfamily;


Pssm-ID: 214692 [Multi-domain]  Cd Length: 201  Bit Score: 57.12  E-value: 7.60e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207     739 EFFNPVLNENQKLAVKRILSGDCRplpYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLheSKV 818
Cdd:smart00487    3 KFGFEPLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWAEEL--KKL 77

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 14251207     819 LQPATMVRVNATCRFEEividavkpycRDGEDIWKASRFRIIITTCSS-SGLFYQIGVRVGHFTHVFVDEA 888
Cdd:smart00487   78 GPSLGLKVVGLYGGDSK----------REQLRKLESGKTDILVTTPGRlLDLLENDKLSLSNVDLVILDEA 138
AAA_30 pfam13604
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
 745-922 7.97e-09

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.


Pssm-ID: 433343 [Multi-domain]  Cd Length: 191  Bit Score: 56.80  E-value: 7.97e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    745 LNENQKLAVKRILSGDCRPLpyILFGPPGTGKTvTIIEAVLQVHFALPdSRILVCAPSNSAAdlvclrlhesKVLQpatm 824
Cdd:pfam13604    2 LNAEQAAAVRALLTSGDRVA--VLVGPAGTGKT-TALKALREAWEAAG-YRVIGLAPTGRAA----------KVLG---- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207    825 vrvnatcrfEEIVIDAVkpycrdgediwkasrfriiiTTcssSGLFYQIGVRVGHFTH--VFVDEAGQASEPECLIPLGL 902
Cdd:pfam13604   64 ---------EELGIPAD--------------------TI---AKLLHRLGGRAGLDPGtlLIVDEAGMVGTRQMARLLKL 111

                          170       180
                   ....*....|....*....|
gi 14251207    903 MSDISGQIVLAGDPMQLGPV 922
Cdd:pfam13604  112 AEDAGARVILVGDPRQLPSV 131
DExxQc_SF1-N cd17914
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members ...
 770-943 5.99e-08

DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Like SF2, they do not form toroidal, predominantly hexameric structures like SF3-6. Their helicase core is surrounded by C and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains or domains engaged in protein-protein interactions. SF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 438706 [Multi-domain]  Cd Length: 121  Bit Score: 52.49  E-value: 5.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  770 GPPGTGKT---VTIIEAVLQVHfALPDSRILVCAPSNSAADlvclrlheskvlqpatmvrvnatcrfeeividavkpycr 846
Cdd:cd17914    6 GPPGTGKTrvlVKIVAALMQNK-NGEPGRILLVTPTNKAAA--------------------------------------- 45

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  847 dgediwkasRFRIIittcsssglfyqigvrvghfthvFVDEAGQASEPECLIPLGLMSDiSGQIVLAGDPMQLGPVIKSR 926
Cdd:cd17914   46 ---------QLDNI-----------------------LVDEAAQILEPETSRLIDLALD-QGRVILVGDHDQLGPVWRGA 92

                        170
                 ....*....|....*..
gi 14251207  927 LAMAYGLNVSFLERLMS 943
Cdd:cd17914   93 VLAKICNEQSLFTRLVR 109
DEXSc_RecD-like cd17933
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ...
 749-922 1.22e-07

DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350691 [Multi-domain]  Cd Length: 155  Bit Score: 52.56  E-value: 1.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  749 QKLAVKRILSGdcrplPYILF-GPPGTGKTvTIIEAVLQVhFALPDSRILVCAPSNSAADlvclRLHESKVLQPATMvrv 827
Cdd:cd17933    2 QKAAVRLVLRN-----RVSVLtGGAGTGKT-TTLKALLAA-LEAEGKRVVLAAPTGKAAK----RLSESTGIEASTI--- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  828 natCRFEEIVIDAVKPYcRDGEDIwkaSRFRIIIttcsssglfyqigvrvghfthvfVDEAGqasepecLIPLGLMSDI- 906
Cdd:cd17933   68 ---HRLLGINPGGGGFY-YNEENP---LDADLLI-----------------------VDEAS-------MVDTRLMAALl 110

                        170       180
                 ....*....|....*....|.
gi 14251207  907 -----SGQIVLAGDPMQLGPV 922
Cdd:cd17933  111 saipaGARLILVGDPDQLPSV 131
SF1_C cd18786
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family ...
 1062-1147 5.93e-05

C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Similar to SF2 helicases, they do not form toroidal, predominantly hexameric structures like SF3-6. SF1 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.


Pssm-ID: 350173 [Multi-domain]  Cd Length: 89  Bit Score: 42.81  E-value: 5.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207 1062 DIGVITPYRKQVEKIRILLR-----NVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDrfeddryflgflsNSKRFNVAI 1136
Cdd:cd18786   12 KGVVLTPYHRDRAYLNQYLQglsldEFDLQLVGAITIDSSQGLTFDVVTLYLPTANSL-------------TPRRLYVAL 78

                         90
                 ....*....|.
gi 14251207 1137 TRPKALLIVLG 1147
Cdd:cd18786   79 TRARKRLVIYD 89
AAA_19 pfam13245
AAA domain;
749-823 4.76e-04

AAA domain;


Pssm-ID: 433059 [Multi-domain]  Cd Length: 136  Bit Score: 41.43  E-value: 4.76e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 14251207    749 QKLAVKRILSGDcrplPYILFGPPGTGKT---VTIIEAVLQVHFAlpDSRILVCAPSNSAADlvclRLHESkVLQPAT 823
Cdd:pfam13245    1 QREAVRTALPSK----VVLLTGGPGTGKTttiRHIVALLVALGGV--SFPILLAAPTGRAAK----RLSER-TGLPAS 67
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 744-786 4.32e-03

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 39.05  E-value: 4.32e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 14251207  744 VLNENQKLAVKRILSGDcRPLPYILFGPPGTGKTvTIIEAVLQ 786
Cdd:cd00009    1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKT-TLARAIAN 41
DEXQc_bact_SNF2 cd18013
DEXQ-box helicase domain of bacterial SNF2 family proteins; Proteins belonging to the SNF2 ...
 749-807 6.68e-03

DEXQ-box helicase domain of bacterial SNF2 family proteins; Proteins belonging to the SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprise a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. The bacterial SNF2 present in this family are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350771 [Multi-domain]  Cd Length: 218  Bit Score: 39.64  E-value: 6.68e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 14251207  749 QKLAVKRILSGDcrplPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAAD 807
Cdd:cd18013    5 QKVAINFIIEHP----YCGLFLDMGLGKTVTTLTALSDLQLDDFTRRVLVIAPLRVARS 59
ResIII pfam04851
Type III restriction enzyme, res subunit;
742-804 8.55e-03

Type III restriction enzyme, res subunit;


Pssm-ID: 398492 [Multi-domain]  Cd Length: 162  Bit Score: 38.42  E-value: 8.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 14251207    742 NPVLNENQKLAVKRIL-SGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNS 804
Cdd:pfam04851    1 KLELRPYQIEAIENLLeSIKNGQKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPRKD 64
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 703-789 9.06e-03

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 39.89  E-value: 9.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14251207  703 TEERRVGDKDLPVLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILS------------GDCRPLPYILFG 770
Cdd:COG0464  119 LELLRESAEALALAAPLVTYEDIGGLEEELLELREAILDDLGGLEEVKEELRELVAlplkrpelreeyGLPPPRGLLLYG 198

                         90       100
                 ....*....|....*....|..
gi 14251207  771 PPGTGKTvTIIEAV---LQVHF 789
Cdd:COG0464  199 PPGTGKT-LLARALageLGLPL 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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