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Conserved domains on  [gi|223468571|ref|NP_066957|]
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large ribosomal subunit protein uL23m isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L23 super family cl46680
Ribosomal protein L23;
42-105 1.61e-13

Ribosomal protein L23;


The actual alignment was detected with superfamily member pfam00276:

Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.07  E-value: 1.61e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 223468571   42 FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
42-105 1.61e-13

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.07  E-value: 1.61e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 223468571   42 FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 32-107 1.19e-09

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 1.19e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 223468571  32 GVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTFTF 107
Cdd:COG0089   11 ALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRF--GRRVGKRSDWKKAIVTLAEGQKIDF 84
rplW PRK05738
50S ribosomal protein L23; Reviewed
 42-114 6.92e-09

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 50.09  E-value: 6.92e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223468571  42 FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTFtfpDLFPEK 114
Cdd:PRK05738  25 FEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRF--GRRIGKRSDWKKAIVTLAEGQKI---DFFGGA 92
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
42-105 1.61e-13

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 62.07  E-value: 1.61e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 223468571   42 FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTF 105
Cdd:pfam00276  24 FEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF--GRFVGRRSDWKKAIVTLAEGQKI 85
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 32-107 1.19e-09

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 1.19e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 223468571  32 GVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTFTF 107
Cdd:COG0089   11 ALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKKKRF--GRRVGKRSDWKKAIVTLAEGQKIDF 84
rplW PRK05738
50S ribosomal protein L23; Reviewed
 42-114 6.92e-09

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 50.09  E-value: 6.92e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223468571  42 FRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHGQTFtfpDLFPEK 114
Cdd:PRK05738  25 FEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRF--GRRIGKRSDWKKAIVTLAEGQKI---DFFGGA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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