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Conserved domains on  [gi|38679914|ref|NP_079229|]
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N-alpha-acetyltransferase 25, NatB auxiliary subunit [Homo sapiens]

Protein Classification

MDM20/NAA25 family protein( domain architecture ID 10561161)

MDM20/NAA25 family protein similar to Caenorhabditis elegans N-terminal acetyltransferase B complex subunit NAA25 homolog, a non-catalytic subunit of the NatB complex which catalyzes acetylation of the N-terminal methionine residues of proteins beginning with Met-Asp or Met-Glu

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NatB_MDM20 pfam09797
N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit ...
 263-658 6.83e-162

N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyzes the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae this subunit is called MDM20 and in Schizosaccharomyces pombe it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1.


:

Pssm-ID: 430834  Cd Length: 368  Bit Score: 479.49  E-value: 6.83e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   263 WQFYLTYFDSVFRLIEEawsppaegehslegevHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDE 342
Cdd:pfam09797   1 WSVWKLYIDSTFKLIEA----------------KESLEEAQKFIEELIKAEEAKSPKSRNPYLARLELISRLRKRSDDAE 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   343 YKLGDPEELMFQYFKKFGDKPCCFTDLKVFVDLLPATQCTKFINQLLgvvpLSTPTEDKLAlPADIRALQQHLCVVQLTR 422
Cdd:pfam09797  65 EDLGPLVELILEYFDKFGSKPCCFDDLKPYLELLSDEQRKEFLEKVS----PSKSELDSLV-PGDEKQLRRHINALKLSR 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   423 LLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWRETGDETTVWQALTLLEEGLTHS 502
Cdd:pfam09797 140 CLGLHSKLSEEEKEALVTELLAIYRAGLRLGASLLTTELQPSDDLALLAAHALLDLYRLTGDLTYLIQAILLLEFLLTKS 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   503 PSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYII 582
Cdd:pfam09797 220 PHNFQLKLLLVRLYLLLGAGSLALDLYSKLDIKQIQLDTLGHLLFTRLSTLGPFSLALNLLEQALRFYRNNEKETPEMIS 299

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38679914   583 QAYKYGAFEKIPEFIAFRNRLNNSLHFAQVRTERMLLDLLLEANISTslaesikSMNLRPEEDDIPWEDLRDNRDL 658
Cdd:pfam09797 300 QAYEYGSYSKIEEFIEFRERLKNSLQRAMVRLERRRLDRLLGGDISD-------EMSLYPDEDRIDWSELSDNRDF 368
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-146 3.08e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 3.08e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG4783  14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKN 146
Cdd:COG4783  94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
 
Name Accession Description Interval E-value
NatB_MDM20 pfam09797
N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit ...
 263-658 6.83e-162

N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyzes the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae this subunit is called MDM20 and in Schizosaccharomyces pombe it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1.


Pssm-ID: 430834  Cd Length: 368  Bit Score: 479.49  E-value: 6.83e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   263 WQFYLTYFDSVFRLIEEawsppaegehslegevHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDE 342
Cdd:pfam09797   1 WSVWKLYIDSTFKLIEA----------------KESLEEAQKFIEELIKAEEAKSPKSRNPYLARLELISRLRKRSDDAE 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   343 YKLGDPEELMFQYFKKFGDKPCCFTDLKVFVDLLPATQCTKFINQLLgvvpLSTPTEDKLAlPADIRALQQHLCVVQLTR 422
Cdd:pfam09797  65 EDLGPLVELILEYFDKFGSKPCCFDDLKPYLELLSDEQRKEFLEKVS----PSKSELDSLV-PGDEKQLRRHINALKLSR 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   423 LLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWRETGDETTVWQALTLLEEGLTHS 502
Cdd:pfam09797 140 CLGLHSKLSEEEKEALVTELLAIYRAGLRLGASLLTTELQPSDDLALLAAHALLDLYRLTGDLTYLIQAILLLEFLLTKS 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   503 PSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYII 582
Cdd:pfam09797 220 PHNFQLKLLLVRLYLLLGAGSLALDLYSKLDIKQIQLDTLGHLLFTRLSTLGPFSLALNLLEQALRFYRNNEKETPEMIS 299

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38679914   583 QAYKYGAFEKIPEFIAFRNRLNNSLHFAQVRTERMLLDLLLEANISTslaesikSMNLRPEEDDIPWEDLRDNRDL 658
Cdd:pfam09797 300 QAYEYGSYSKIEEFIEFRERLKNSLQRAMVRLERRRLDRLLGGDISD-------EMSLYPDEDRIDWSELSDNRDF 368
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-146 3.08e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 3.08e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG4783  14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKN 146
Cdd:COG4783  94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 434-568 2.55e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.55e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 434 QKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAvhaliDVWRETGDETtvwQALTLLEEGLTHSPSNAQFKLLLV 513
Cdd:COG4783   8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-----EILLQLGDLD---EAIVLLHEALELDPDEPEARLNLG 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 38679914 514 RIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALR 568
Cdd:COG4783  80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-213 4.67e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 4.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914    22 LDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQAL-TILYREMHRPELVTK 100
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALaTILIEAGEFEEAEKH 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   101 LyEAAVKKVPNSEEYHSHLFMAYARVGEYkkmQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDenlsktmfLPLAERM 180
Cdd:TIGR02917 250 A-DALLKKAPNSPLAHYLKALVDFQKKNY---EDARETLQDALKSAPEYLPALLLAGASEYQLGN--------LEQAYQY 317

                         170       180       190
                  ....*....|....*....|....*....|...
gi 38679914   181 VEKMVKEDKIEAEAeVELYYMILERLGKYQEAL 213
Cdd:TIGR02917 318 LNQILKYAPNSHQA-RRLLASIQLRLGRVDEAI 349
 
Name Accession Description Interval E-value
NatB_MDM20 pfam09797
N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit ...
 263-658 6.83e-162

N-acetyltransferase B complex (NatB) non catalytic subunit; This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyzes the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae this subunit is called MDM20 and in Schizosaccharomyces pombe it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1.


Pssm-ID: 430834  Cd Length: 368  Bit Score: 479.49  E-value: 6.83e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   263 WQFYLTYFDSVFRLIEEawsppaegehslegevHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDE 342
Cdd:pfam09797   1 WSVWKLYIDSTFKLIEA----------------KESLEEAQKFIEELIKAEEAKSPKSRNPYLARLELISRLRKRSDDAE 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   343 YKLGDPEELMFQYFKKFGDKPCCFTDLKVFVDLLPATQCTKFINQLLgvvpLSTPTEDKLAlPADIRALQQHLCVVQLTR 422
Cdd:pfam09797  65 EDLGPLVELILEYFDKFGSKPCCFDDLKPYLELLSDEQRKEFLEKVS----PSKSELDSLV-PGDEKQLRRHINALKLSR 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   423 LLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWRETGDETTVWQALTLLEEGLTHS 502
Cdd:pfam09797 140 CLGLHSKLSEEEKEALVTELLAIYRAGLRLGASLLTTELQPSDDLALLAAHALLDLYRLTGDLTYLIQAILLLEFLLTKS 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   503 PSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYII 582
Cdd:pfam09797 220 PHNFQLKLLLVRLYLLLGAGSLALDLYSKLDIKQIQLDTLGHLLFTRLSTLGPFSLALNLLEQALRFYRNNEKETPEMIS 299

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38679914   583 QAYKYGAFEKIPEFIAFRNRLNNSLHFAQVRTERMLLDLLLEANISTslaesikSMNLRPEEDDIPWEDLRDNRDL 658
Cdd:pfam09797 300 QAYEYGSYSKIEEFIEFRERLKNSLQRAMVRLERRRLDRLLGGDISD-------EMSLYPDEDRIDWSELSDNRDF 368
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-146 3.08e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 3.08e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG4783  14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKN 146
Cdd:COG4783  94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-266 6.34e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 6.34e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLhcAKVLKAIG--LQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELV 98
Cdd:COG2956  18 YLLNGQPDKAIDLLEEALELDPET--VEAHLALGnlYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRA 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  99 TKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFwsvmsLIMQSISAQDENLSKtmflplAE 178
Cdd:COG2956  96 EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAELYLEQGDYDE------AI 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 179 RMVEKMVKEDKIEAEAEVELyYMILERLGKYQEALDVIRGKLgeKLTSEIQSRENKCMAMYKKLSRWPECNALSRRLLLK 258
Cdd:COG2956 165 EALEKALKLDPDCARALLLL-AELYLEQGDYEEAIAALERAL--EQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241


                ....*...
gi 38679914 259 NSDDWQFY 266
Cdd:COG2956 242 DPSDDLLL 249
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 13-160 8.48e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 8.48e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  13 RRLRPIYDYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREM 92
Cdd:COG3914  80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38679914  93 HRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQS 160
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQA 227
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-142 3.51e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 3.51e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG3914 122 LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKI 142
Cdd:COG3914 202 AYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-220 4.48e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 4.48e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  20 DYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVT 99
Cdd:COG2956  85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 100 KLYEAAVKKVPNSEEYHSHLFMAYARVGEYkkmQQAGMALYKIVPKNPYYFwSVMSLIMQSISAQDEnlsktmfLPLAER 179
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAALERALEQDPDYL-PALPRLAELYEKLGD-------PEEALE 233

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 38679914 180 MVEKMVKEDkiEAEAEVELYYMILERLGKYQEALDVIRGKL 220
Cdd:COG2956 234 LLRKALELD--PSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-156 1.40e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 1.40e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG0457  18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYkkmQQAGMALYKIVPKNPYYFWSVMSL 156
Cdd:COG0457  98 DYDKALELDPDDAEALYNLGLALLELGRY---DEAIEAYERALELDPDDADALYNL 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 30-147 1.42e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 1.42e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  30 AIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKV 109
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 38679914 110 PNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNP 147
Cdd:COG4235  82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-131 1.56e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 1.56e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG0457  52 YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIE 131

                        90       100       110
                ....*....|....*....|....*....|.
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKK 131
Cdd:COG0457 132 AYERALELDPDDADALYNLGIALEKLGRYEE 162
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-217 4.47e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 4.47e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  51 KAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYk 130
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY- 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 131 kmQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDenlsktmfLPLAERMVEKMVKEDKIEAEAEVELyYMILERLGKYQ 210
Cdd:COG0457  93 --EEALEDYDKALELDPDDAEALYNLGLALLELGR--------YDEAIEAYERALELDPDDADALYNL-GIALEKLGRYE 161


                ....*..
gi 38679914 211 EALDVIR 217
Cdd:COG0457 162 EALELLE 168
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 50-217 1.77e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 1.77e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  50 LKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEY 129
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 130 KKMQQAGMALYKIVPKNPYYFWSVMslimqSISAQDENLSKtmflplAERMVEKMVKEDKIEAEAEVELyYMILERLGKY 209
Cdd:COG2956  93 DRAEELLEKLLELDPDDAEALRLLA-----EIYEQEGDWEK------AIEVLERLLKLGPENAHAYCEL-AELYLEQGDY 160


                ....*...
gi 38679914 210 QEALDVIR 217
Cdd:COG2956 161 DEAIEALE 168
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 47-151 1.97e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.97e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  47 AKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARV 126
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                        90       100
                ....*....|....*....|....*....
gi 38679914 127 GEYKKmqqaGMALYKIV----PKNPYYFW 151
Cdd:COG4783  86 GDYDE----ALALLEKAlkldPEHPEAYL 110
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 8-115 4.06e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 4.06e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   8 QDPND----RRLRPIYdyLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQ 83
Cdd:COG4235  12 ANPNDaegwLLLGRAY--LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                        90       100       110
                ....*....|....*....|....*....|..
gi 38679914  84 ALTILYREMHRPELVTKLYEAAVKKVPNSEEY 115
Cdd:COG4235  90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 55-135 5.58e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 5.58e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  55 LQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQ 134
Cdd:COG5010  64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                .
gi 38679914 135 A 135
Cdd:COG5010 144 A 144
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 434-568 2.55e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.55e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 434 QKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAvhaliDVWRETGDETtvwQALTLLEEGLTHSPSNAQFKLLLV 513
Cdd:COG4783   8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-----EILLQLGDLD---EAIVLLHEALELDPDEPEARLNLG 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 38679914 514 RIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALR 568
Cdd:COG4783  80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 63-151 3.27e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 3.27e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  63 EAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKI 142
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                ....*....
gi 38679914 143 VPKNPYYFW 151
Cdd:COG4235  81 DPDNPEALY 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 445-561 3.95e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 3.95e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914 445 RYQHGLEFGKTCLKTELQFSDYYCLLAvhaliDVWRETGDETtvwQALTLLEEGLTHSPSNAQFKLLLVRIYCMLGAFEP 524
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELA-----ELYLEQGDYD---EAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 38679914 525 VVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQ 561
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 21-110 6.45e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 6.45e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG5010  64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                        90
                ....*....|
gi 38679914 101 LYEAAVKKVP 110
Cdd:COG5010 144 ALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
55-145 9.22e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 9.22e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  55 LQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKlYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQ 134
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|.
gi 38679914 135 AGMALYKIVPK 145
Cdd:COG3063  81 YLERALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
21-111 1.72e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.72e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLhcAKVLKAIG--LQRTGKQEEAFTLaQEVAALEPTDDNSLQALTILYREMHRPELV 98
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDN--ADALNNLGllLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEA 78

                        90
                ....*....|...
gi 38679914  99 TKLYEAAVKKVPN 111
Cdd:COG3063  79 LAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
73-217 2.52e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 2.52e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  73 ALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYfWS 152
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-LN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38679914 153 VMSLIMQSISAQDEnlsktmflplAERMVEKMVKEDKIEAEAeveLYY--MILERLGKYQEALDVIR 217
Cdd:COG0457  81 NLGLALQALGRYEE----------ALEDYDKALELDPDDAEA---LYNlgLALLELGRYDEAIEAYE 134
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-140 3.91e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 3.91e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTK 100
Cdd:COG0457  86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 38679914 101 LYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALY 140
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-147 4.00e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 4.00e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914  47 AKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARV 126
Cdd:COG5010  22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101

                        90       100
                ....*....|....*....|.
gi 38679914 127 GEYKKMQQAGMALYKIVPKNP 147
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNP 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-213 4.67e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 4.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914    22 LDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQAL-TILYREMHRPELVTK 100
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALaTILIEAGEFEEAEKH 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   101 LyEAAVKKVPNSEEYHSHLFMAYARVGEYkkmQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDenlsktmfLPLAERM 180
Cdd:TIGR02917 250 A-DALLKKAPNSPLAHYLKALVDFQKKNY---EDARETLQDALKSAPEYLPALLLAGASEYQLGN--------LEQAYQY 317

                         170       180       190
                  ....*....|....*....|....*....|...
gi 38679914   181 VEKMVKEDKIEAEAeVELYYMILERLGKYQEAL 213
Cdd:TIGR02917 318 LNQILKYAPNSHQA-RRLLASIQLRLGRVDEAI 349
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-108 9.30e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 9.30e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38679914   9 DPNDRRLRPIYD--YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLqALT 86
Cdd:COG2956 174 DPDCARALLLLAelYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALA 252

                        90       100
                ....*....|....*....|..
gi 38679914  87 ILYREMHRPELVTKLYEAAVKK 108
Cdd:COG2956 253 DLLERKEGLEAALALLERQLRR 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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