U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Mus musculus]
Ubl_SNRNP25 domain-containing protein( domain architecture ID 13018439)
Ubl_SNRNP25 domain-containing protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Ubl_SNRNP25 | cd17058 | ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 ... |
31-119 | 9.46e-53 | |||
ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 (SNRNP25) and similar proteins; SNRNP25, also termed U11/U12 small nuclear ribonucleoprotein 25 kDa protein, U11/U12 snRNP 25 kDa protein (U11/U12-25K), or minus-99 protein, is a component of the U11/U12 snRNPs that are part of the U12-type spliceosome. It contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. : Pssm-ID: 340578 Cd Length: 89 Bit Score: 160.76 E-value: 9.46e-53
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Name | Accession | Description | Interval | E-value | |||
Ubl_SNRNP25 | cd17058 | ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 ... |
31-119 | 9.46e-53 | |||
ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 (SNRNP25) and similar proteins; SNRNP25, also termed U11/U12 small nuclear ribonucleoprotein 25 kDa protein, U11/U12 snRNP 25 kDa protein (U11/U12-25K), or minus-99 protein, is a component of the U11/U12 snRNPs that are part of the U12-type spliceosome. It contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. Pssm-ID: 340578 Cd Length: 89 Bit Score: 160.76 E-value: 9.46e-53
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Ubiquitin_4 | pfam18036 | Ubiquitin-like domain; This domain has a ubiquitin-like fold. It is found in a diverse range ... |
32-120 | 5.77e-46 | |||
Ubiquitin-like domain; This domain has a ubiquitin-like fold. It is found in a diverse range of proteins including the 25KDa U11/U12 component. Pssm-ID: 465624 Cd Length: 89 Bit Score: 143.56 E-value: 5.77e-46
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Name | Accession | Description | Interval | E-value | |||
Ubl_SNRNP25 | cd17058 | ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 ... |
31-119 | 9.46e-53 | |||
ubiquitin-like (Ubl) domain found in small nuclear ribonucleoprotein U11/U12 subunit 25 (SNRNP25) and similar proteins; SNRNP25, also termed U11/U12 small nuclear ribonucleoprotein 25 kDa protein, U11/U12 snRNP 25 kDa protein (U11/U12-25K), or minus-99 protein, is a component of the U11/U12 snRNPs that are part of the U12-type spliceosome. It contains a conserved ubiquitin-like (Ubl) domain with a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. Pssm-ID: 340578 Cd Length: 89 Bit Score: 160.76 E-value: 9.46e-53
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Ubiquitin_4 | pfam18036 | Ubiquitin-like domain; This domain has a ubiquitin-like fold. It is found in a diverse range ... |
32-120 | 5.77e-46 | |||
Ubiquitin-like domain; This domain has a ubiquitin-like fold. It is found in a diverse range of proteins including the 25KDa U11/U12 component. Pssm-ID: 465624 Cd Length: 89 Bit Score: 143.56 E-value: 5.77e-46
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Ubl_ubiquitin_like | cd17039 | ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like ... |
34-114 | 1.83e-06 | |||
ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like (Ubl) proteins have a similar ubiquitin (Ub) beta-grasp fold and attach to other proteins in a Ubl manner but with biochemically distinct roles. Ub and Ubl proteins conjugate and deconjugate via ligases and peptidases to covalently modify target polypeptides. Some Ubl domains have adaptor roles in Ub-signaling by mediating protein-protein interaction. Prokaryotic sulfur carrier proteins are Ub-related proteins that can be activated in an ATP-dependent manner. Polyubiquitination signals for a diverse set of cellular events via different isopeptide linkages formed between the C terminus of one ubiquitin (Ub) and the epsilon-amine of K6, K11, K27, K29, K33, K48, or K63 of a second Ub. One of these seven lysine residues (K27, Ub numbering) is conserved in this Ubl_ubiquitin_like family. K27-linked Ub chains are versatile and can be recognized by several downstream receptor proteins. K27 has roles beyond chain linkage, such as in Ubl NEDD8 (which contains many of the same lysines (K6, K11, K27, K33, K48) as Ub) where K27 has a role (other than conjugation) in the mechanism of protein neddylation. Pssm-ID: 340559 [Multi-domain] Cd Length: 68 Bit Score: 42.20 E-value: 1.83e-06
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Ubl2_FAT10 | cd17053 | ubiquitin-like (Ubl) domain 2 found in leukocyte antigen F (HLA-F) adjacent transcript 10 ... |
32-117 | 6.87e-03 | |||
ubiquitin-like (Ubl) domain 2 found in leukocyte antigen F (HLA-F) adjacent transcript 10 (FAT10) and similar proteins; FAT10, also termed ubiquitin D (UBD), or diubiquitin, is a cytokine-inducible ubiquitin-like (Ubl) modifer that is highly expressed in the thymus, and targets substrates covalently for 26S proteasomal degradation. It is also associated with cancer development, antigen processing and antimicrobial defense, chromosomal stability and cell cycle regulation. FAT10 is presented on immune cells and under the inflammatory conditions, is synergistically induced by interferon gamma (IFNgamma) and tumor necrosis factor (TNFalpha) in the non-immune (liver parenchymal) cells. FAT10 contains two Ubl domains. The family corresponds to the second Ubl domain of FAT10. Some family members contain only one Ubl domain. Pssm-ID: 340573 Cd Length: 71 Bit Score: 33.09 E-value: 6.87e-03
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Blast search parameters | ||||
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