NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|14017578|ref|NP_114265|]
View 

ATP synthase CF1 epsilon subunit (chloroplast) [Triticum aestivum]

Protein Classification

F0F1 ATP synthase subunit epsilon( domain architecture ID 11414036)

F0F1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-135 9.22e-75

ATP synthase CF1 epsilon subunit


:

Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 218.58  E-value: 9.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLlNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVN 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVNWIPP 135
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAISS 134
 
Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-135 9.22e-75

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 218.58  E-value: 9.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLlNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVN 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVNWIPP 135
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAISS 134
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 2-131 1.91e-54

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 167.05  E-value: 1.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578     2 KLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGND 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 14017578    82 AELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVN 131
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 3-124 3.40e-37

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 123.01  E-value: 3.40e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578   3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:cd12152   1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 14017578  83 ELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRAR 124
Cdd:cd12152  81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERAL 122
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 3-131 1.14e-35

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 119.52  E-value: 1.14e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578   3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:COG0355   1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 14017578  83 ELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVN 131
Cdd:COG0355  81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 3-82 2.26e-25

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 91.73  E-value: 2.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578     3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
atpE CHL00063
ATP synthase CF1 epsilon subunit
 1-135 9.22e-75

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 218.58  E-value: 9.22e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLlNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:CHL00063   1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNNEITILVN 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVNWIPP 135
Cdd:CHL00063  80 DAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEAINAISS 134
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 2-131 1.91e-54

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 167.05  E-value: 1.91e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578     2 KLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGND 81
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 14017578    82 AELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVN 131
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 3-124 3.40e-37

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 123.01  E-value: 3.40e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578   3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:cd12152   1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEA 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 14017578  83 ELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRAR 124
Cdd:cd12152  81 ERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALERAL 122
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 3-131 1.14e-35

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 119.52  E-value: 1.14e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578   3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:COG0355   1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 14017578  83 ELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVN 131
Cdd:COG0355  81 ERAEDIDVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAE 129
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 1-131 5.94e-35

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 117.55  E-value: 5.94e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:PRK00571   2 ATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLAD 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEAVN 131
Cdd:PRK00571  82 SAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAE 132
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-129 1.73e-26

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 96.18  E-value: 1.73e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWsGFARIVNNEIIILGN 80
Cdd:PRK13446   3 KKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNG-GFAEVSNNKVTVLAE 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIEA 129
Cdd:PRK13446  82 TAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQV 130
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 3-82 2.26e-25

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 91.73  E-value: 2.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578     3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADSA 80
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 2-131 2.03e-20

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 80.58  E-value: 2.03e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    2 KLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGND 81
Cdd:PRK13450   3 NIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILCDA 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 14017578   82 AELGSDIDPEEAQKALEIAEANLSKAEGTkDLVEAKLALRRARIRIEAVN 131
Cdd:PRK13450  83 SEWPEEIDIKRAENAKKRAEERLRKKDEI-DVKRAELALFRAIARIKLKE 131
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 1-128 7.18e-18

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 74.26  E-value: 7.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIrLLNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:PRK14735   1 MPIHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDI-VKNGVRTPFAISGGFMEVLPHRVTILAD 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIRIE 128
Cdd:PRK14735  80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLR 127
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 2-127 2.67e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 67.21  E-value: 2.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    2 KLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLwSGFARIVNNEIIILGND 81
Cdd:PRK13444   5 KLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVE-GGFCEVKDNQISILTDH 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 14017578   82 AELGSDIDPEEAQKALEIAEAnLSKAEgtkdlvEAKLALRRARIRI 127
Cdd:PRK13444  84 GALKEDIDHEHEKKLLAEAEK-LPPSD------SKNLLLQKTKTRI 122
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 86-129 1.48e-09

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 50.07  E-value: 1.48e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 14017578    86 SDIDPEEAQKALEIAEANLSKAEGT-KDLVEAKLALRRARIRIEA 129
Cdd:pfam00401   1 EDIDVARAEEAKERAEERLAQAKQDdIDYARAQAALARALARLQA 45
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-85 2.00e-09

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 51.17  E-value: 2.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:PRK13442   4 ATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTVLAE 83


                 ....*
gi 14017578   81 DAELG 85
Cdd:PRK13442  84 RAELV 88
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 1-92 5.86e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 47.47  E-value: 5.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYvlTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRlLNDQWLTAVLWSGFARIVNNEIIILGN 80
Cdd:PRK13451   1 MKVKIV--TPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIK-SGDDEYEYKVADGFLHCDGKNVIIITE 77

                         90
                 ....*....|..
gi 14017578   81 DAELGSDIDPEE 92
Cdd:PRK13451  78 EAGREEEISPHR 89
atpC PRK13449
ATP synthase F1 subunit epsilon;
1-83 2.13e-07

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 45.92  E-value: 2.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    1 MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAV-LWSGFARIVNNEIIILG 79
Cdd:PRK13449   2 AKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFhVQGGFAEVNEKGLTILA 81


                 ....
gi 14017578   80 NDAE 83
Cdd:PRK13449  82 EHAV 85
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 10-122 5.18e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 42.86  E-value: 5.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578   10 PKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA----ELG 85
Cdd:PRK14736  11 PERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVLAERAapveELT 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 14017578   86 SD-IDPE-EAQKALEIAEANLSKAEGTK----DLVEAKLALRR 122
Cdd:PRK14736  91 PEmIDREiEAVEMERDATQDLDKREALNaqivQMQEAKATLSL 133
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 3-131 5.01e-04

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 37.80  E-value: 5.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRllNDQWlTAVLW--SGFARIVNNEIIILGN 80
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVR--KDQH-TDVLYvsGGIVEVTPTRVTIMVD 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 14017578   81 DAELGSDIDPEEAQKALEIAEANLSKAEGTK-DLVEAKLALRRARIRIEAVN 131
Cdd:PRK13452  83 DMERAENLNQAEAEKARARAKEVLKNPDASKlDIEAANKRLKEADARLKALN 134
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 7-109 1.04e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 36.68  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    7 VLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLwSGFARIVNNEIIILGNDAELGS 86
Cdd:PRK13448   8 LVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVL-GGLAEVSEKGLTVLADVATSVA 86

                         90       100
                 ....*....|....*....|....*
gi 14017578   87 DIDpeEAQKALEIA--EANLSKAEG 109
Cdd:PRK13448  87 DLD--LAQFAATIAemEAQLAGKVG 109
atpC PRK00539
F0F1 ATP synthase subunit epsilon; Validated
 3-120 5.11e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 179059 [Multi-domain]  Cd Length: 133  Bit Score: 34.87  E-value: 5.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14017578    3 LNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDA 82
Cdd:PRK00539   4 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENF 83

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 14017578   83 ELGSDIDPEEAQKALEIAEANLSKAEGTKDLVEAKLAL 120
Cdd:PRK00539  84 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL 121
PRK06228 PRK06228
F0F1 ATP synthase subunit epsilon; Validated
 1-37 7.23e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 235750 [Multi-domain]  Cd Length: 131  Bit Score: 34.52  E-value: 7.23e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 14017578    1 MKLNLYVLTPKRIIWDCE-VKEIILSTNSGQIGVLPNH 37
Cdd:PRK06228   1 ASMNLKILLPFEVFAEKKgVTRIVAETREGSFGLLPHR 38
FadB COG1250
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ...
 87-130 7.43e-03

3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440862 [Multi-domain]  Cd Length: 281  Bit Score: 35.09  E-value: 7.43e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 14017578  87 DIDPEEAQKALEIAEANLSKAEGTKDLVEAKLALRRARIR--------------IEAV 130
Cdd:COG1250  32 DISPEALERARARIAKLLDKLVKKGKLTEEEADAALARITpttdlaaladadlvIEAV 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH