|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
221-285 |
2.78e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 127.90 E-value: 2.78e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 221 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 285
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
81-145 |
6.17e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 115.58 E-value: 6.17e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 81 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 145
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
221-285 |
2.26e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 2.26e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677501764 221 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 285
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
81-146 |
1.73e-26 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 103.05 E-value: 1.73e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 81 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 146
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
360-908 |
1.10e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 360 ALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKekvdLSNQLEEER 439
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR----LEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 440 RKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHS-GPPPPDHPDAAEILRLRERLLSAS 518
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 519 KEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNwKSKLDSLASDHQKSLEDLKA 598
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 599 TLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEV--QA 676
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAlaAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 677 SQHRLELQEAQDQRRDAELRVHELEK-----LDVEYRGQAQAIEFLKEQISLAEkkMLDYERLQRAEAQGKQEVESLREK 751
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 752 LLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKcksgEKK 831
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA----LLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677501764 832 VDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE 908
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-975 |
1.71e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 357 LQEALKEKQQHIEQLLAERDLERAEVAKAtshicevEKEIALLKAQheqyVAEAEEKLQRARLLVESVRKEKVDLSNQLE 436
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEEL-------EAELEELESR----LEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 437 EERRKVEDLQFRVEEESITKGDLEltTVAEKSRVLQLEEELTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERLLS 516
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEEL--ERLEEALEELREELEEAEQALDA 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 517 ASKEHQRESGVLR--DKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQ----------QATSENMG--LMDNWKSKL 582
Cdd:TIGR02168 480 AERELAQLQARLDslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeaaieAALGGRLQavVVENLNAAK 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 583 DSLASDHQKS--------LEDLKATLNSGPGAQ--QKEIGELKAVMEGIKMEHQLE------LGNLQAKHDLETAMHVKE 646
Cdd:TIGR02168 560 KAIAFLKQNElgrvtflpLDSIKGTEIQGNDREilKNIEGFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNALELAK 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 647 KEALREKLQEAQEELAGlqRHW-----RAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQI 721
Cdd:TIGR02168 640 KLRPGYRIVTLDGDLVR--PGGvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 722 SLAEKKMLDYERLQRAE-AQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNdisEETIRTKETVEGLQDKLNKR 800
Cdd:TIGR02168 718 RKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE---EELAEAEAEIEELEAQIEQL 794
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 801 DKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVL 880
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 881 L---------LEANRHSPGPERD-LSREVHKAEWRIKEqkLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLR 950
Cdd:TIGR02168 875 LeallnerasLEEALALLRSELEeLSEELRELESKRSE--LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
650 660
....*....|....*....|....*
gi 1677501764 951 LQHQLMSTEDALRDALDQAQQVEKL 975
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRL 977
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
219-547 |
1.04e-15 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 81.66 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 219 LRLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFapihkvIRIGFPSTSPAKA 298
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF------IRPDDDSLLNGNA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 299 KKTKRmamgvsalthspssssissvssvassvggrpsRSGLLTETSSryarkISGTTALQEALKEKQQHIEQLLAERDLE 378
Cdd:COG5244 77 AYEKI--------------------------------KGGLVCESKG-----MDKDGEIKQENHEDRIHFEESKIRRLEE 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 379 RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESIT--- 455
Cdd:COG5244 120 TIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYDMVELVSDISETlnr 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 456 KGDLELTTVAEKSRVLQLEE---ELTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLLSASKEH--QRESGVLRD 530
Cdd:COG5244 200 NGSIQRSSVRECERSNIHDVlflVNGILDGVIDELNG----------------ELERLRRQLVSLMSSHgiEVEENSRLK 263
|
330
....*....|....*..
gi 1677501764 531 KYEKALKAYQAEVDKLR 547
Cdd:COG5244 264 ATLEKFQSLELKVNTLQ 280
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
361-875 |
8.53e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.39 E-value: 8.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 361 LKEKQQHIEQLLAERDLE----RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEkvdlsnqLE 436
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE-------LR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 437 EERRKVEDlqfRVEEesitkgdlelttvAEKSRVLQlEEELTLRRGEIEELQQcllHSGPPPPDHPDAAEILRLRERLLS 516
Cdd:pfam15921 335 EAKRMYED---KIEE-------------LEKQLVLA-NSELTEARTERDQFSQ---ESGNLDDQLQKLLADLHKREKELS 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 517 ASKEHQ-----RESG--VLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQ---QATSENMGLMDNWKSKLDSLA 586
Cdd:pfam15921 395 LEKEQNkrlwdRDTGnsITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMaaiQGKNESLEKVSSLTAQLESTK 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 587 SDHQKSLEDL---KATLNSGP-----------------GAQQKEIGELKA-------VMEGIKMEHQlELGNLQAKHD-L 638
Cdd:pfam15921 475 EMLRKVVEELtakKMTLESSErtvsdltaslqekeraiEATNAEITKLRSrvdlklqELQHLKNEGD-HLRNVQTECEaL 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 639 ETAMHVKEK--EALREKLQEAQE------ELAGLQRHWRAQLEVQASQHRLELQEAQ--DQRRDAELRVHELEKLDVEYR 708
Cdd:pfam15921 554 KLQMAEKDKviEILRQQIENMTQlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKilKDKKDAKIRELEARVSDLELE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 709 gQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAE----NRLQAVEALCSSQHTHMIESNDISEETI 784
Cdd:pfam15921 634 -KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKrnfrNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 785 RTKETVEGLQDKLNK----RDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQL 860
Cdd:pfam15921 713 NTLKSMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGEL 792
|
570
....*....|....*.
gi 1677501764 861 -VLISQELLRKERSLN 875
Cdd:pfam15921 793 eVLRSQERRLKEKVAN 808
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
81-142 |
8.06e-14 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.88 E-value: 8.06e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1677501764 81 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 142
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-978 |
1.24e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 361 LKEKQQHIEQLlaERDLERAEVAKATSHICEV-EKEIALLKAQH-EQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEE 438
Cdd:COG1196 195 LGELERQLEPL--ERQAEKAERYRELKEELKElEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 439 RRKVEDLQFRVEEesiTKGDLELttvaEKSRVLQLEEELTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLLSAS 518
Cdd:COG1196 273 RLELEELELELEE---AQAEEYE----LLAELARLEQDIARLEERRRELEE----------------RLEELEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 519 KEHQREsgvlrdkyEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKA 598
Cdd:COG1196 330 EELEEL--------EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 599 TLNsgPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEELAGLQRHwRAQLEVQASQ 678
Cdd:COG1196 402 LEE--LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE----ALEEAAEEEAELEEEEEALLEL-LAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 679 HRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAekkmldyerlqRAEAQGKQEVESLREKLLVAENR 758
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR-----------GLAGAVAVLIGVEAAYEAALEAA 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 759 LQAVEAlcssqhthmiesNDISEETIRTKETVEGLQDKLNKRdkeVTALTSqTEMLRAQVSALESKCKSGEKKVDALLKE 838
Cdd:COG1196 544 LAAALQ------------NIVVEDDEVAAAAIEYLKAAKAGR---ATFLPL-DKIRARAALAAALARGAIGAAVDLVASD 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 839 KRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKA--EWRIKEQKLKDDIR 916
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLaaLLEAEAELEELAER 687
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1677501764 917 GLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVEKLMEA 978
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
363-721 |
2.09e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 363 EKQQHIEQLlaerdleRAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKV 442
Cdd:TIGR02168 674 ERRREIEEL-------EEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 443 EDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgpppPDHPDAAEILRLRERLLSASKEHQ 522
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA---------QIEQLKEELKALREALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 523 RESGVLRDKYEKaLKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglmdnwkskldslasdhQKSLEDLKATLNS 602
Cdd:TIGR02168 814 LLNEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDIESLAAE-------------------IEELEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 603 gpgaQQKEIGELKAVMEGIKMEHQLELGNLQAK-HDLETAMHVKEKE--ALREKLQEAQEELAGLQRHWRAQLEVQASQH 679
Cdd:TIGR02168 874 ----ELEALLNERASLEEALALLRSELEELSEElRELESKRSELRREleELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 680 RLELQEAQ-------DQRRDAELRVHELEK---------LDV--EYRGQAQAIEFLKEQI 721
Cdd:TIGR02168 950 SLTLEEAEalenkieDDEEEARRRLKRLENkikelgpvnLAAieEYEELKERYDFLTAQK 1009
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
349-974 |
1.59e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 349 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLL 420
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSiaeKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 421 VESVRKEKVDLSNQLEEERRKV--------------EDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEE 486
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRdklteeyaelkeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 487 LQQCLLHSGPPPPD-----HPDAAEILRLRERLLSASKEHQRESGVL------RDKYEKALKAYQAEVDKLRAANEKYAQ 555
Cdd:TIGR02169 411 LQEELQRLSEELADlnaaiAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 556 EVAGLKDKVQQATSENMGLMDNWK-------------SKLDSLASDHQKSLE-----DLKATLNSGPGAQQKEIGELKAV 617
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAVEEvlkasiqgvhgtvAQLGSVGERYATAIEvaagnRLNNVVVEDDAVAKEAIELLKRR 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 618 MEG--------------------------------IKMEHQLE------LGNLQAKHDLETAM----------------- 642
Cdd:TIGR02169 571 KAGratflplnkmrderrdlsilsedgvigfavdlVEFDPKYEpafkyvFGDTLVVEDIEAARrlmgkyrmvtlegelfe 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 643 --------HVKEKEA------LREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAELRVHELEK----LD 704
Cdd:TIGR02169 651 ksgamtggSRAPRGGilfsrsEPAELQRLRERLEGLKRE-LSSLQSELRRIENRLDELSQELSDASRKIGEIEKeieqLE 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 705 VEYRGQAQAIEFLKEQISLAEKKMLDYER-LQRAEAqgkqEVESLREKLLVAENRLQAVEALCSSQHTHMI--ESNDISE 781
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSeLKELEA----RIEELEEDLHKLEEALNDLEARLSHSRIPEIqaELSKLEE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 782 ETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLV 861
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 862 LISQELLRKERSLNELRVllleanrhspgPERDLSREVHKAEWRIKEQKLKDDIrgLREKLTGLDKE-KSLSDQRRYSLI 940
Cdd:TIGR02169 886 DLKKERDELEAQLRELER-----------KIEELEAQIEKKRKRLSELKAKLEA--LEEELSEIEDPkGEDEEIPEEELS 952
|
730 740 750
....*....|....*....|....*....|....
gi 1677501764 941 DRSSAPELLRLQHQLMSTEDALRDALDQAQQVEK 974
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-928 |
1.93e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 352 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE-KLQRARLLVESVRKEKVD 430
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 431 LSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRL 510
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 511 RERLLSASKEHQRES--GVLRDKYEKALKA--YQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLA 586
Cdd:TIGR02168 532 DEGYEAAIEAALGGRlqAVVVENLNAAKKAiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 587 SDHQKSLEDLKATL-------------------------------------------NSGPGAQQKEIGELKAVMEgiKM 623
Cdd:TIGR02168 612 PKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaktNSSILERRREIEELEEKIE--EL 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 624 EHQLELGNlqakhdletamhvKEKEALREKLQEAQEELAGLQRHWRaQLEVQASQHRLELQEAQDQRRDAELRV----HE 699
Cdd:TIGR02168 690 EEKIAELE-------------KALAELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLEERIaqlsKE 755
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 700 LEKLDVEYRGQAQAIEFLKEQISLAEKKMldyERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcsSQHTHMIESNDI 779
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNE---EAANLRERLESL 829
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 780 SEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESkcksgekKVDALLKEKRRLEAELETVSRKTHDASGQ 859
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-------ELEALLNERASLEEALALLRSELEELSEE 902
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 860 LVLISQELLRKERSLNELRVLLLEANRHSPGPERDLS------REVHKAEWRI---KEQKLKDDIRGLREKLTGLDKE 928
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnlqerlSEEYSLTLEEaeaLENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-979 |
3.29e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 3.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 356 ALQEALKEKQ-----QHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQ---YVAEAEEKLQRARLLVESVRKE 427
Cdd:TIGR02168 217 ELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 428 KVDLSNQLEEERRKVEDLQFRVEEesitkgdLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhsgppppdhPDAAEI 507
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEE-------LEAQLEELESKLDELAEELAELEEKLEELKEEL----------ESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 508 LRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMdnwKSKLDSLAS 587
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---KKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 588 DHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKmehQLELGNLQAKHDLETA-MHVKEKEALREKLQEAQEELAGL-- 664
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELREELE---EAEQALDAAERELAQLqARLDSLERLQENLEGFSEGVKALlk 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 665 QRHWRAQLEVQASQhRLELQEAQDQRRDAELRVHeLEKLDVEYRGQA-QAIEFLKE------------QISLAEKKMLDY 731
Cdd:TIGR02168 514 NQSGLSGILGVLSE-LISVDEGYEAAIEAALGGR-LQAVVVENLNAAkKAIAFLKQnelgrvtflpldSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 732 ERLQR-------------AEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESND---ISEETIRTKETVEGLQD 795
Cdd:TIGR02168 592 EILKNiegflgvakdlvkFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlVRPGGVITGGSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 796 KLNkRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLN 875
Cdd:TIGR02168 672 ILE-RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 876 ELRVLLLEANrhspGPERDLSREVHKAEWRIKE-----QKLKDDIRGLREKLTGLDKEKSlSDQRRYSLIDRSSAPELLR 950
Cdd:TIGR02168 751 QLSKELTELE----AEIEELEERLEEAEEELAEaeaeiEELEAQIEQLKEELKALREALD-ELRAELTLLNEEAANLRER 825
|
650 660
....*....|....*....|....*....
gi 1677501764 951 LQHQLMSTEDALRDALDQAQQVEKLMEAM 979
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDI 854
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
348-1010 |
6.96e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 6.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 348 ARKISGTTALQEALK-EKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE--KLQRARLLVESV 424
Cdd:PTZ00121 1133 ARKAEDARKAEEARKaEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarKAEAARKAEEER 1212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 425 RKEKVdlsnQLEEERRKVEDLQfRVEEesiTKGDLELTTVAEKSRvlqleEELTLRRGEIEELQQCLLHSGPPPPDHPDA 504
Cdd:PTZ00121 1213 KAEEA----RKAEDAKKAEAVK-KAEE---AKKDAEEAKKAEEER-----NNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 505 AEILRLRERLLSASK----EHQRESGVLRDKYEKALKAyqaevDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKS 580
Cdd:PTZ00121 1280 ADELKKAEEKKKADEakkaEEKKKADEAKKKAEEAKKA-----DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 581 KLDSLASDHQKSLEDLKATlnsgpGAQQKEIGELKAVMEGIKMEHQLELgnlQAKHDLETAMHVKEKEALREKLQEAQEE 660
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKK-----EEAKKKADAAKKKAEEKKKADEAKK---KAEEDKKKADELKKAAAAKKKADEAKKK 1426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 661 LAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAElrvhELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRA-EA 739
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE----EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdEA 1502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 740 QGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISE----ETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLR 815
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkkkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 816 AQVSALESKCKSGEkkVDALLKEKRRLEAEletVSRKTHDASgqlvlISQELLRKERslnelrvlllEANRHSPGPERDL 895
Cdd:PTZ00121 1583 AEEAKKAEEARIEE--VMKLYEEEKKMKAE---EAKKAEEAK-----IKAEELKKAE----------EEKKKVEQLKKKE 1642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 896 SREVHKAEwRIKEQKLKDDIRGLREKltgldkEKSLSDQRRyslidrssAPELLRLQHQLMSTEDALRDALDQAQQVEKL 975
Cdd:PTZ00121 1643 AEEKKKAE-ELKKAEEENKIKAAEEA------KKAEEDKKK--------AEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
|
650 660 670
....*....|....*....|....*....|....*.
gi 1677501764 976 MEAMRSCPDKAQTIGNSGSANGIH-QQDKAQKQEDK 1010
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKaEEAKKEAEEDK 1743
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
373-879 |
9.36e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 9.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 373 AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEE 452
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 453 SiTKGDLELTTVAEKSRVLQLEEELTLRRgEIEELQQcllhsgppppdhpDAAEILRLRErlLSASKEHQRESGVLRDKY 532
Cdd:PTZ00121 1404 K-KKADELKKAAAAKKKADEAKKKAEEKK-KADEAKK-------------KAEEAKKADE--AKKKAEEAKKAEEAKKKA 1466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 533 EKALKAYQAevdKLRAANEKYAQEvagLKDKVQQAtsenmglmdnwKSKLDSL--ASDHQKSLEDLKAtlnsgpGAQQKE 610
Cdd:PTZ00121 1467 EEAKKADEA---KKKAEEAKKADE---AKKKAEEA-----------KKKADEAkkAAEAKKKADEAKK------AEEAKK 1523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 611 IGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLE----LQEA 686
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEevmkLYEE 1603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 687 QDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAE-KKMLDYERLQRAEAQGKQEVESLREKllVAENRLQAVEAL 765
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKK--AEEDKKKAEEAK 1681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 766 CSSQHTHMIESNDISEEtiRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLK---EKRRL 842
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEA--EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeEKKKI 1759
|
490 500 510
....*....|....*....|....*....|....*..
gi 1677501764 843 EAELETVSRKTHDASGQLVLISQELLRKERSLNELRV 879
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
349-661 |
3.49e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 349 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEK 428
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 429 VDLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhsGPPPPDHPDAAEIL 508
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI---EELESELEALLNER 882
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 509 RLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQatsenmglmdnwksKLDSLASD 588
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN--------------LQERLSEE 948
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 589 HQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKmehqlELG--NLQA-----------------KHDLETAmhvkekea 649
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK-----ELGpvNLAAieeyeelkerydfltaqKEDLTEA-------- 1015
|
330
....*....|..
gi 1677501764 650 lREKLQEAQEEL 661
Cdd:TIGR02168 1016 -KETLEEAIEEI 1026
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
348-914 |
1.56e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 348 ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRARLLVESVR 425
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 426 KEKVDLSNQLEEERRKVEDLQFRVEEESiTKGDlelttvAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAA 505
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAK-KKAD------AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 506 EILRLRERLLSASKEHQRESGVLRDKYEKALKayQAEVDKLRAANEKYAQEVAGLKDKVQQAtsenmglmDNWKSKLDSL 585
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKK--KADELKKAAAAKKKADEAKKKAEEKKKA--------DEAKKKAEEA 1443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 586 --ASDHQKSLEDLKATLNSGPGAQQ-KEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQE--- 659
Cdd:PTZ00121 1444 kkADEAKKKAEEAKKAEEAKKKAEEaKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakk 1523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 660 --ELAGLQRHWRAQLEVQASQHRL--ELQEAQDQRRDAELRVHELEKLDVEYRG----QAQAIEFLKEQISLAEKKMLDY 731
Cdd:PTZ00121 1524 adEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEEKKKAEEAKKAEEDKNmalrKAEEAKKAEEARIEEVMKLYEE 1603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 732 ERLQRAEAQGKQEVESLR-EKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQ 810
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 811 TEMLRAQVSALESKCKSgEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANR--HS 888
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKiaHL 1762
|
570 580
....*....|....*....|....*.
gi 1677501764 889 PGPERDLSREVHKAEWRIKEQKLKDD 914
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
339-852 |
1.86e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 339 LLTETSSRYARKISGTTALQEALKEK----QQHIEQL-LAERDLE-RAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEE 412
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVymdlNNNIEKMiLAFEELRvQAENARLEMHF-KLKEDHEKIQHLEEEYKKEIND 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 413 KLQRARLLVEsvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLL 492
Cdd:pfam05483 238 KEKQVSLLLI-----------QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 493 HSGPPPPDHPDAAEILRLRERLLSASKEHQ-RESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEn 571
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLTEEKEAQmEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITME- 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 572 MGLMDNWKSKLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKAV---MEGIKMEHQLELGNLQAK----HDLETAMHV 644
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNKEVELEELKKIL----AEDEKLLDEKKQFekiAEELKGKEQELIFLLQARekeiHDLEIQLTA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 645 KeKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQdqrrdaelRVHELEKLDVEYRGQAQAIEFLKEQisla 724
Cdd:pfam05483 462 I-KTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKE--------LTQEASDMTLELKKHQEDIINCKKQ---- 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 725 EKKML-DYERLQRAEAQGKQEVESLREKLlvaenRLQAVEALCSSQHTHMiESNDISEETIRTKETVEGLQDKLNKRDKE 803
Cdd:pfam05483 529 EERMLkQIENLEEKEMNLRDELESVREEF-----IQKGDEVKCKLDKSEE-NARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1677501764 804 VTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRK 852
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQK 651
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
345-880 |
7.24e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 7.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 345 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKaqheqyvaEAEEKLQRARLLVESV 424
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE--------ELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 425 RKEKVDLSNQLEEERRKVEDLQFRVEE-ESITKGDLELTTVAEKSRVL-QLEEELTLRRGEIEELQQCLlhsgppppdhp 502
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEElEEKVKELKELKEKAEEYIKLsEFYEEYLDELREIEKRLSRL----------- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 503 daAEILRLRERLLSASKEHQRESGVLRDKYEKALKayqaEVDKLRAANEKYaQEVAGLKDKVQQATSENMGL-MDNWKSK 581
Cdd:PRK03918 320 --EEEINGIEERIKELEEKEERLEELKKKLKELEK----RLEELEERHELY-EEAKAKKEELERLKKRLTGLtPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 582 LDSLASDHQKSLEDLKaTLNSGPGAQQKEIGELKAVMEGIKM--------------EHQlelGNLQAKHDLETAMHVKEK 647
Cdd:PRK03918 393 LEELEKAKEEIEEEIS-KITARIGELKKEIKELKKAIEELKKakgkcpvcgrelteEHR---KELLEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 648 EALREKLQEAQEELAGLQRHWRAQLEVqasqhrLELQEAQDQRRDAE--LRVHELEKLDVEYRG----QAQAIEFLKEQI 721
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESEL------IKLKELAEQLKELEekLKKYNLEELEKKAEEyeklKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 722 SLAE--KKMLDYERLQRAEAQGKQEVESLREKLL------------VAENRLQAVEALcssqHTHMIESNDISEETIRTK 787
Cdd:PRK03918 543 SLKKelEKLEELKKKLAELEKKLDELEEELAELLkeleelgfesveELEERLKELEPF----YNEYLELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 788 ETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKC-----KSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVL 862
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseeeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698
|
570
....*....|....*...
gi 1677501764 863 ISQELLRKERSLNELRVL 880
Cdd:PRK03918 699 LKEELEEREKAKKELEKL 716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
407-763 |
9.51e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 9.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 407 VAEAEEKLQRARLLVESVRK----------EKVDLSNQLEEERRKVEdlqfRVEEESITKGDLELTTVAekSRVLQLEEE 476
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAE----RYQALLKEKREYEGYELL--KEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 477 LTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQE 556
Cdd:TIGR02169 239 KEAIERQLASLEEEL--EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 557 VAGLKDKVQQATSEnmglMDNWKSKLDSLAsdhqKSLEDLKATLNSgpgaQQKEIGELKAVMEGIKMEHQLELGNLQAKH 636
Cdd:TIGR02169 317 LEDAEERLAKLEAE----IDKLLAEIEELE----REIEEERKRRDK----LTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 637 DlETAMHVKEKEALREKLQEAQEELAGLQRHWRaQLEVQASQHRLELQEAQDQRRDAElrvHELEKLDVEYRGQAQAIEF 716
Cdd:TIGR02169 385 D-ELKDYREKLEKLKREINELKRELDRLQEELQ-RLSEELADLNAAIAGIEAKINELE---EEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1677501764 717 LKEQISLAEKKmldYERLQRAEAQGKQEVESLREKLLVAENRLQAVE 763
Cdd:TIGR02169 460 LAADLSKYEQE---LYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
391-852 |
2.11e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 391 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVESVRKEKvdlsNQLEEERRKVEDLQfRVEEESITKGDLELTTVAEKSRV 470
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL-QLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 471 LQLEEELTlrrgEIEELQQcllhsgppppdhpdaaEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAAN 550
Cdd:COG4717 149 EELEERLE----ELRELEE----------------ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 551 EKYAQEVAGLKDKVQQATSEnmglMDNWKSKLdsLASDHQKSLEDLKATLNSGpGAQQKEIGELKAVMEGIKMEHQLELG 630
Cdd:COG4717 209 AELEEELEEAQEELEELEEE----LEQLENEL--EAAALEERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 631 NLQAKHDLETaMHVKEKEALREKLQEAQeELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRG- 709
Cdd:COG4717 282 VLGLLALLFL-LLAREKASLGKEAEELQ-ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEl 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 710 --QAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSqhthmiESNDISEETIrtK 787
Cdd:COG4717 360 eeELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEE------LLEALDEEEL--E 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 788 ETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESkcksgEKKVDALLKEKRRLEAELETVSRK 852
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELRELAEE 491
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
507-851 |
2.82e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 57.83 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 507 ILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAAnEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLa 586
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQEL-QKRIRLLEKREAEAEEALREQAELNRLKKKYLEAL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 587 SDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQ---LELGNLQAKHDLETAmHVKEKEALREKLQEAQEELAg 663
Cdd:pfam05557 89 NKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQstnSELEELQERLDLLKA-KASEAEQLRQNLEKQQSSLA- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 664 lqrhwRAQLEVQASQHRLELQEAQDQ----RRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEA 739
Cdd:pfam05557 167 -----EAEQRIKELEFEIQSQEQDSEivknSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 740 QGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEEtirtketVEGLQDKLNKRDKEVTALTSQTEMLRAQVS 819
Cdd:pfam05557 242 KYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRR-------IEQLQQREIVLKEENSSLTSSARQLEKARR 314
|
330 340 350
....*....|....*....|....*....|....*....
gi 1677501764 820 ALESKCKSGEKKVDALLKE-------KRRLEAELETVSR 851
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKlkrhkalVRRLQRRVLLLTK 353
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
356-851 |
8.18e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 8.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 356 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEkeiallkaQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQL 435
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHE--------ERREELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 436 EEERRKVEDLQfrvEEESITKGDLELTTvAEKSRVLQLEEELTLRRGEIEE-LQQCLLHSGppppdhPDAAEILRLRER- 513
Cdd:PRK02224 282 RDLRERLEELE---EERDDLLAEAGLDD-ADAEAVEARREELEDRDEELRDrLEECRVAAQ------AHNEEAESLREDa 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 514 --LLSASKEHQRESGVLrdkyEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglMDNWKSKLDSLASDHQK 591
Cdd:PRK02224 352 ddLEERAEELREEAAEL----ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD----LGNAEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 592 ---SLEDLKATLNSgpgaQQKEIGELKAVMEGIKMEhqlELGnlqakHDLETAMHVKEKEALREKLQEAQEELAGL---- 664
Cdd:PRK02224 424 lreREAELEATLRT----ARERVEEAEALLEAGKCP---ECG-----QPVEGSPHVETIEEDRERVEELEAELEDLeeev 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 665 ----QRHWRAQLEVQA------------------SQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQaieflkEQIS 722
Cdd:PRK02224 492 eeveERLERAEDLVEAedrierleerredleeliAERRETIEEKRERAEELRERAAELEAEAEEKREAAA------EAEE 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 723 LAEKKMLDYERLQRAEAQGKQEVESL---REKLLVAENRLQAVEALcSSQHTHMIESNDISEETIRTK------------ 787
Cdd:PRK02224 566 EAEEAREEVAELNSKLAELKERIESLeriRTLLAAIADAEDEIERL-REKREALAELNDERRERLAEKrerkreleaefd 644
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 788 -ETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSR 851
Cdd:PRK02224 645 eARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
391-1009 |
1.76e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 391 EVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVdlsNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRV 470
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDA---RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 471 LQ-LEEELTLRRGeiEELQQcllhsgppppdhpdaAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAA 549
Cdd:PTZ00121 1178 AEaARKAEEVRKA--EELRK---------------AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 550 NEKYAQEVAGLKD--KVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQL 627
Cdd:PTZ00121 1241 EAKKAEEERNNEEirKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 628 ELGNLQAKhdletamhvKEKEALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQRRDAELRVHELEKLDVEY 707
Cdd:PTZ00121 1321 KKKAEEAK---------KKADAAKKKAEEAKKAAEAAKA--------EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 708 RGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQgKQEVESLREKllvAENRLQAVEALCSSQHTHMIESNDISEETIRTK 787
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKK---AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 788 ETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRlEAELETVSRKTHDASGQLVLISQEL 867
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD-EAKKAEEAKKADEAKKAEEAKKADE 1538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 868 LRK---ERSLNELRvllleanrhsPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSS 944
Cdd:PTZ00121 1539 AKKaeeKKKADELK----------KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 945 APELLRLQHQLMSTEDaLRDALDQAQQVEKLMEAMRSCPDKAQTIGNSGSANGIHQQDKAQKQED 1009
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEE-LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
411-1009 |
3.41e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 411 EEKLQRARLLVESVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdleltTVAEKSRvLQLEEELTLRRGEIEELQQC 490
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN---------ELHEKQK-FYLRQSVIDLQTKLQEMQME 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 491 LLHSGPPPPDHPDAAEILRLRERllsaSKEHQRESGvlRDKYEKALKAYQAEVDKLRA---ANEKYAQEVAGLKDKVQQA 567
Cdd:pfam15921 126 RDAMADIRRRESQSQEDLRNQLQ----NTVHELEAA--KCLKEDMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 568 TSENMGLMDNWKS-KLDSLASDHQKSLEDLKATLNSGPG---AQQKEIGELKA----VMEGIKMEHQLELGNLQAKHDLE 639
Cdd:pfam15921 200 SGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGrifPVEDQLEALKSesqnKIELLLQQHQDRIEQLISEHEVE 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 640 TAMHVKEKEALREKLQEAQEELAGLQRHWRAQ----------LEVQASQHRLELQEAqdqRRDAELRVHELEKldveyrg 709
Cdd:pfam15921 280 ITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlsdLESTVSQLRSELREA---KRMYEDKIEELEK------- 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 710 qaqaieflkeQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNdiseetIRTKET 789
Cdd:pfam15921 350 ----------QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRD------TGNSIT 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 790 VEGLQDKLNKRDKEVtaltsqtEMLRAQVSALESKCKSG-EKKVDALLKEKRRLE------AELETVSRKTHDASGQLVL 862
Cdd:pfam15921 414 IDHLRRELDDRNMEV-------QRLEALLKAMKSECQGQmERQMAAIQGKNESLEkvssltAQLESTKEMLRKVVEELTA 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 863 ISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE-QKLKDDIRGLREKLTGLDKekslsdqrryslid 941
Cdd:pfam15921 487 KKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElQHLKNEGDHLRNVQTECEA-------------- 552
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 942 rssapelLRLQhqlMSTEDALRDALdqAQQVEKLMeamrscpdkaQTIGNSGSANGIHQQDKAQKQED 1009
Cdd:pfam15921 553 -------LKLQ---MAEKDKVIEIL--RQQIENMT----------QLVGQHGRTAGAMQVEKAQLEKE 598
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-752 |
3.49e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 340 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQR 416
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEleeLEEALAELEEEEEE 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 417 ARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIE-------ELQQ 489
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkaallLAGL 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 490 CLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRES---GVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQ 566
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDdevAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 567 ATSENMGLMDnWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGikMEHQLELGnlqakhdletAMHVKE 646
Cdd:COG1196 600 AVDLVASDLR-EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAGG----------SLTGGS 666
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 647 KEALREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEK 726
Cdd:COG1196 667 RRELLAALLEAEAELEELAER-LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
410 420 430
....*....|....*....|....*....|.
gi 1677501764 727 KMLDYERLQRAE-----AQGKQEVESLREKL 752
Cdd:COG1196 746 ELLEEEALEELPeppdlEELERELERLEREI 776
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-886 |
7.38e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 7.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 649 ALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQRRDAElrvHELEKLDVEYRGQAQAIEFLKEQISLAEKKM 728
Cdd:COG4942 17 AQADAAAEAEAELEQLQQ--------EIAELEKELAALKKEEKALL---KQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 729 ldyERLQRAEAQGKQEVESLREKLlvaENRLQAVEALCSSQHTHMIESNDISEETIRTketVEGLQDKLNKRDKEVTALT 808
Cdd:COG4942 86 ---AELEKEIAELRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 809 SQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANR 886
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
643-844 |
7.87e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 7.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 643 HVKEKEALREKLQEAQEE---LAGLQRHWR--AQLEVQASQHRLELQEA---QDQRRDAELRvHELEKLDVEYRGQAQAI 714
Cdd:COG4913 233 HFDDLERAHEALEDAREQielLEPIRELAEryAAARERLAELEYLRAALrlwFAQRRLELLE-AELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 715 EFLKEQISLAEKKMLDYERlQRAEAQGkQEVESLREKLLVAENRLQAVEALCSSQHTHMiesNDISEETIRTKETVEGLQ 794
Cdd:COG4913 312 ERLEARLDALREELDELEA-QIRGNGG-DRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1677501764 795 DKLNKRdkeVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEA 844
Cdd:COG4913 387 AEAAAL---LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
651-981 |
8.86e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 8.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 651 REKLQEAQEELAGLQRHwRAQLEVQASQHRlELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLD 730
Cdd:COG4913 609 RAKLAALEAELAELEEE-LAEAEERLEALE-AELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 731 YERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcssqhthmiESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQ 810
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEK----------ELEQAEEELDELQDRLEAAEDLARLELRALLEERFA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 811 TEMLRAQVSALEskcKSGEKKVDALLKEKRRLEAELETV----SRKTHDASGQL---------------VLISQELLRKE 871
Cdd:COG4913 757 AALGDAVERELR---ENLEERIDALRARLNRAEEELERAmrafNREWPAETADLdadleslpeylalldRLEEDGLPEYE 833
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 872 RSLNELRvllleaNRHSPGPERDLSREVHKAEWRIKEQklkddIRGLREKLTGLDkeksLSDQRRYSL-IDRSSAPELLR 950
Cdd:COG4913 834 ERFKELL------NENSIEFVADLLSKLRRAIREIKER-----IDPLNDSLKRIP----FGPGRYLRLeARPRPDPEVRE 898
|
330 340 350
....*....|....*....|....*....|....*.
gi 1677501764 951 LQHQLMS-TEDALRDALDQAQ----QVEKLMEAMRS 981
Cdd:COG4913 899 FRQELRAvTSGASLFDEELSEarfaALKRLIERLRS 934
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-765 |
1.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEiallKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLE 436
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR----DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 437 EERRKVEDLQFRVE--EESITKGDLELTTVAEKSRVLQ------------LEEELTLRRGEIEELQQCLlhsGPPPPDHP 502
Cdd:PRK02224 360 ELREEAAELESELEeaREAVEDRREEIEELEEEIEELRerfgdapvdlgnAEDFLEELREERDELRERE---AELEATLR 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 503 DAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSenmglMDNWKSKL 582
Cdd:PRK02224 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 583 DSLAsDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDlETAMHVKEKEALREKLQEAQEELA 662
Cdd:PRK02224 512 ERLE-ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE-EAEEAREEVAELNSKLAELKERIE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 663 GLQRHWRAQLEVQASQHRLE--------LQEAQDQRRD--AEL--RVHELE-KLDVEYRGQAQA-IEFLKEQISLAEKKm 728
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIErlrekreaLAELNDERRErlAEKreRKRELEaEFDEARIEEAREdKERAEEYLEQVEEK- 668
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1677501764 729 LDYERLQRAEAQGK--------QEVESLREKLLVAENRLQAVEAL 765
Cdd:PRK02224 669 LDELREERDDLQAEigavenelEELEELRERREALENRVEALEAL 713
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
419-877 |
2.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 419 LLVESVRKEKVDLSN----QLEEERRKVEDLQFRVEEESITKGDLElttvAEKSRVLQLEEELTLRRGEIEELQQCLLHS 494
Cdd:COG4717 46 MLLERLEKEADELFKpqgrKPELNLKELKELEEELKEAEEKEEEYA----ELQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 495 GPPPPDHPDAAEILRLRERLLSASKEHQResgvLRDKYEkALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGL 574
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEE----LEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 575 MDNWKSKLDSLASDHQKSLEDLKATLNsgpgAQQKEIGELKAVMEGIKMEHQLELGNLQAKhdLETAMHV-----KEKEA 649
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELE----ELEEELEQLENELEAAALEERLKEARLLLL--IAAALLAllglgGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 650 LREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAqaieflKEQISLAEKKML 729
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPP------DLSPEELLELLD 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 730 DYERLQRAEAQGKQEVESLRekLLVAENRLQAVEALCSSQHTHMIESN-DISEETIRTKETVEGLQDKLNKRDKEVTALT 808
Cdd:COG4717 345 RIEELQELLREAEELEEELQ--LEELEQEIAALLAEAGVEDEEELRAAlEQAEEYQELKEELEELEEQLEELLGELEELL 422
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677501764 809 SQT--EMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRkthdaSGQLVLISQELLRKERSLNEL 877
Cdd:COG4717 423 EALdeEELEEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
356-566 |
2.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 356 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVESVRKEKVDLSNQL 435
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 436 EEERRKVEDL---QFRVEEESITKGDLELTTVAEKSRVLQLEEELT-LRRGEIEELQQcllhsgPPPPDHPDAAEILRLR 511
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRA------DLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 512 ERLLSASKEHQREsgvlRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQ 566
Cdd:COG4942 174 AELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
359-753 |
2.48e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 359 EALKEKQQHIEQLLAERDLERAEVAKATSHIcevEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEE 438
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 439 RRKVEDLQFRVE----EESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLLhsGPPPPDHPDAAEILRLRERL 514
Cdd:COG4717 226 EEELEQLENELEaaalEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVL--GLLALLFLLLAREKASLGKE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 515 LSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEN--MGLMDNWKSKLDSLASDHQKS 592
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVED 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 593 LEDLKATLNsgpgaQQKEIGELKAVMEgiKMEHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEELAGLQRhwraql 672
Cdd:COG4717 384 EEELRAALE-----QAEEYQELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEE------ 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 673 evqasqhrlELQEAQDQRRDAELRVHELEKlDVEYRGQAQAIEFLKEQISLAEKkmlDYERLQRAEAQGKQEVESLREKL 752
Cdd:COG4717 447 ---------ELEELREELAELEAELEQLEE-DGELAELLQELEELKAELRELAE---EWAALKLALELLEEAREEYREER 513
|
.
gi 1677501764 753 L 753
Cdd:COG4717 514 L 514
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
362-886 |
2.87e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 362 KEKQQHIEQLLAERDLERAEVAKATSHICEvekeiaLLKAQHEQYvAEAEEklQRARLL------------VESVRKEKV 429
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQE------QLQAETELC-AEAEE--MRARLAarkqeleeilheLESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 430 DLSNQLEEERRK----VEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgppppDHPDAA 505
Cdd:pfam01576 89 ERSQQLQNEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSK----------ERKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 506 EILRLRERLLSASKEHQRESGVLRDKYEkalkAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSL 585
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLSKLKNKHE----AMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 586 ASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEgikmehqLELGNLQAKHDLETAMHVKEK-EALREKLQEaqeELAGL 664
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEEETAQKNNALKKIRE-------LEAQISELQEDLESERAARNKaEKQRRDLGE---ELEAL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 665 QRHWRAQLEVQASQHRLELQEAQD-----QRRDAELRVHELEKLDVEYRgQAQAIEFLKEQISLAEKKMLDYERlqraea 739
Cdd:pfam01576 305 KTELEDTLDTTAAQQELRSKREQEvtelkKALEEETRSHEAQLQEMRQK-HTQALEELTEQLEQAKRNKANLEK------ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 740 qGKQEVESlrekllvaenrlqavealcssqhthmiESNDISEETirtKETVEGLQDKLNKRDKevtaltsqtemLRAQVS 819
Cdd:pfam01576 378 -AKQALES---------------------------ENAELQAEL---RTLQQAKQDSEHKRKK-----------LEGQLQ 415
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1677501764 820 ALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANR 886
Cdd:pfam01576 416 ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETR 482
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
632-979 |
2.98e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 632 LQAKHDLETAmhVKEKEALREKLQEAQEELAGLQRHWRA-QLEVQASQHRLEL-QEAQDQRRDAELRVHELEKLDVEYRG 709
Cdd:COG3096 288 LELRRELFGA--RRQLAEEQYRLVEMARELEELSARESDlEQDYQAASDHLNLvQTALRQQEKIERYQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 710 QAQAIEFLKEQISLAEkkmldyERLQRAEaqgkQEVESLREKLLVAENRL-----------QAVEALCSSQHthMIESND 778
Cdd:COG3096 366 QEEVVEEAAEQLAEAE------ARLEAAE----EEVDSLKSQLADYQQALdvqqtraiqyqQAVQALEKARA--LCGLPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 779 ISEETIrtKETVEGLQDKLNKRDKEVTALT---SQTEMLRAQVS-ALESKCK-SGE-------KKVDALLKEKRRLEAEL 846
Cdd:COG3096 434 LTPENA--EDYLAAFRAKEQQATEEVLELEqklSVADAARRQFEkAYELVCKiAGEversqawQTARELLRRYRSQQALA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 847 ETVSRkthdASGQLvlisQELLRKERSLNELRVLLLEANRHSPGP---ERDLsrEVHKAEWRIKEQKLKDDIRGLREKLT 923
Cdd:COG3096 512 QRLQQ----LRAQL----AELEQRLRQQQNAERLLEEFCQRIGQQldaAEEL--EELLAELEAQLEELEEQAAEAVEQRS 581
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1677501764 924 GLDKEKSLSDQRRYSLIDRssAPELLRLQHQLMSTEDALRDALDQAQQVEKLMEAM 979
Cdd:COG3096 582 ELRQQLEQLRARIKELAAR--APAWLAAQDALERLREQSGEALADSQEVTAAMQQL 635
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-850 |
3.18e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 339 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAE-AEEKLQRA 417
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEdQNSKLSKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 418 RLLVEsvrKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgpp 497
Cdd:pfam01576 154 RKLLE---ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------- 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 498 ppdhpdaaEILRLRERLLSASKEHQREsgvlrdkyEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQAtSENMGLMDN 577
Cdd:pfam01576 223 --------QIAELQAQIAELRAQLAKK--------EEELQAALARLEEETAQKNNALKKIRELEAQISEL-QEDLESERA 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 578 WKSKLDSLASDHQKSLEDLKA----TLNSGPGAQ------QKEIGELKAVMEGIKMEHQLELGNLQAKH---------DL 638
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTeledTLDTTAAQQelrskrEQEVTELKKALEEETRSHEAQLQEMRQKHtqaleelteQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 639 ETAMHV-----KEKEALREKLQEAQEELAGLQR------HWRAQLEVQASQHRLELQEAQDQRRDAELRVH----ELEKL 703
Cdd:pfam01576 366 EQAKRNkanleKAKQALESENAELQAELRTLQQakqdseHKRKKLEGQLQELQARLSESERQRAELAEKLSklqsELESV 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 704 D-VEYRGQAQAIEFLKEQISLaEKKMLDYERLQRAEAQGK-----------QEVESLREKLLVAENRLQAVEALCSSQHT 771
Cdd:pfam01576 446 SsLLNEAEGKNIKLSKDVSSL-ESQLQDTQELLQEETRQKlnlstrlrqleDERNSLQEQLEEEEEAKRNVERQLSTLQA 524
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1677501764 772 HMIESNDISEEtirTKETVEGLQDKLNKRDKEVTALTSQtemlraqvsaLESKCKSGEKkvdaLLKEKRRLEAELETVS 850
Cdd:pfam01576 525 QLSDMKKKLEE---DAGTLEALEEGKKRLQRELEALTQQ----------LEEKAAAYDK----LEKTKNRLQQELDDLL 586
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-660 |
3.66e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 356 ALQEALKEKQQHIEQLLAERDLERAEVAkatshicEVEKEIALLKAQHEQYVAE--------AEEKLQRARLLVESVRKE 427
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELK-------ELEARIEELEEDLHKLEEAlndlearlSHSRIPEIQAELSKLEEE 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 428 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhsgppppdHPDAAEI 507
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL---------EELEAAL 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 508 LRLRERLLSASKEhqresgvlRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLAS 587
Cdd:TIGR02169 878 RDLESRLGDLKKE--------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 588 DhqKSLEDLKATLnsgpgaqqKEIGELKAVMEGIKM-------EHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEE 660
Cdd:TIGR02169 950 E--LSLEDVQAEL--------QRVEEEIRALEPVNMlaiqeyeEVLKRLDELKEKRAKLEE----ERKAILERIEEYEKK 1015
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
349-765 |
4.66e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 4.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 349 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALL-----KAQHEQYVAEAEEKLQRARLLVES 423
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqeLEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 424 VRkekvDLSNQLEEERRKVEDLQFRVEEEsitkgdLELTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgpPPPDHPD 503
Cdd:COG4717 158 LR----ELEEELEELEAELAELQEELEEL------LEQLSLATEEELQDLAEELEELQQRLAELEE-------ELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 504 AAEILRLRERLLSASKEHQRESGVLRDKYEK--------ALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLM 575
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 576 DNWKSKLDSLASD---HQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIK--------MEHQLELGNLQAKHD-LETAMH 643
Cdd:COG4717 301 GKEAEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQellreaeeLEEELQLEELEQEIAaLLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 644 VKEKEALREKLQEAQEELAGLQRhwRAQLEVQASQHRLELQEAQDQRRDAELRvHELEKLDVEYRGQAQAIEFLKEQISL 723
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEE--LEELEEQLEELLGELEELLEALDEEELE-EELEELEEELEELEEELEELREELAE 457
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1677501764 724 AEKKMLDYERLQRAEAQgKQEVESLREKLLVAENRLQAVEAL 765
Cdd:COG4717 458 LEAELEQLEEDGELAEL-LQELEELKAELRELAEEWAALKLA 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
368-980 |
5.05e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 368 IEQLLAERDLERAEVAKATSHICEVEKEIALL---KAQHEQYVAEAEEKLQRARLL----VESVRKEKVDLSNQLEEERR 440
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLrreREKAERYQALLKEKREYEGYEllkeKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 441 KVEDLQFRVEEESITKGDLE--LTTVAEKSRVLQLEEELTLRRgEIEELQqcllhsgppppdhpdaAEILRLrERLLSAS 518
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEqlLEELNKKIKDLGEEEQLRVKE-KIGELE----------------AEIASL-ERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 519 KEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLM----------DNWKSKLDSLasd 588
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRaeleevdkefAETRDELKDY--- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 589 hQKSLEDLKATLNSGPGAQQKEIGEL-KAVMEGIKMEHQLElGNLQAKHDLETAMHVKEKE--ALREKLQEAQEELAGLQ 665
Cdd:TIGR02169 391 -REKLEKLKREINELKRELDRLQEELqRLSEELADLNAAIA-GIEAKINELEEEKEDKALEikKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 666 RHWRA------QLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQ-ISLAEKKMLDYE-----R 733
Cdd:TIGR02169 469 QELYDlkeeydRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlGSVGERYATAIEvaagnR 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 734 LQ----RAEAQGKQEVESLREKLL-----VAENRLQAVEALCSSqhTHMIESNDISEETIRTKETVEG-----LQDKLNK 799
Cdd:TIGR02169 549 LNnvvvEDDAVAKEAIELLKRRKAgratfLPLNKMRDERRDLSI--LSEDGVIGFAVDLVEFDPKYEPafkyvFGDTLVV 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 800 RDKEvtalTSQTEMLRAQVSALESKC--KSG-----EKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKER 872
Cdd:TIGR02169 627 EDIE----AARRLMGKYRMVTLEGELfeKSGamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 873 SLNELRVLLLEANRHSpgpeRDLSREVHKAEWRikEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPE--LLR 950
Cdd:TIGR02169 703 RLDELSQELSDASRKI----GEIEKEIEQLEQE--EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEedLHK 776
|
650 660 670
....*....|....*....|....*....|
gi 1677501764 951 LQHQLMSTEDALRDalDQAQQVEKLMEAMR 980
Cdd:TIGR02169 777 LEEALNDLEARLSH--SRIPEIQAELSKLE 804
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
540-764 |
7.53e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 7.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 540 QAEVDKLRAANEKYAQEVAGLKDKVQQATS------ENMGLMDnwkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGE 613
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD-----LSEEAKLLLQQLSELESQLA----EARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 614 LKAVMEGIkmEHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEELAGLQRHWRAQ-LEVQASQHRLELQEAQDQRRD 692
Cdd:COG3206 238 AEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAELEAELAELSARYTPNhPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1677501764 693 AELrvheLEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEA 764
Cdd:COG3206 312 QRI----LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
624-981 |
1.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 624 EHQLELGNLQA-KHDLETAMHVKEKEALREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAELRVHELEk 702
Cdd:TIGR02169 208 EKAERYQALLKeKREYEGYELLKEKEALERQKEAIERQLASLEEE-LEKLTEEISELEKRLEEIEQLLEELNKKIKDLG- 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 703 lDVEYRGQAQAIEFLKEQIslaekkmldyERLQRAEAQGKQEVESLREKLLVAEnrlqavealcssqhthmiesndisEE 782
Cdd:TIGR02169 286 -EEEQLRVKEKIGELEAEI----------ASLERSIAEKERELEDAEERLAKLE------------------------AE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 783 TIRTKETVEGLQDKLNKRDKEVTALTSQtemlraqvsaleskcksgekkVDALLKEKRRLEAELETVS---RKTHDASGQ 859
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEE---------------------YAELKEELEDLRAELEEVDkefAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 860 LVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEqklkddirgLREKLTGLDKEKSLSDQRRYSL 939
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE---------LEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1677501764 940 I-DRSSA-PELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRS 981
Cdd:TIGR02169 461 AaDLSKYeQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
480-989 |
2.50e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 48.21 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 480 RRGEIEELQQCLLHSGPPPPDHPDAAEILRLRE--RLLSASKEHQR----ESGVLRDKYEKALKAYQAEVDKLRAANEKY 553
Cdd:pfam07111 48 RRGRSLELEGSQALSQQAELISRQLQELRRLEEevRLLRETSLQQKmrleAQAMELDALAVAEKAGQAEAEGLRAALAGA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 554 AQEVAGLKDKVQQATSENMGLMdnwKSKLDSLASDHQKSL-------EDLKATLNSgpgAQQKEIGELKAVMEGIKMEHQ 626
Cdd:pfam07111 128 EMVRKNLEEGSQRELEEIQRLH---QEQLSSLTQAHEEALssltskaEGLEKSLNS---LETKRAGEAKQLAEAQKEAEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 627 LELGNLQAKHDLETAMHV----------------------KEKEALREKLQEAQEELAGLQRHWR-AQLEVQASQHRLEL 683
Cdd:pfam07111 202 LRKQLSKTQEELEAQVTLveslrkyvgeqvppevhsqtweLERQELLDTMQHLQEDRADLQATVElLQVRVQSLTHMLAL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 684 QEAQDQRrdaelRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEA--QGKQEVESLREKLLvAENRLQA 761
Cdd:pfam07111 282 QEEELTR-----KIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSvkQLRGQVAELQEQVT-SQSQEQA 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 762 VEALCSSQHTHMIESNDISEETIRTKetVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRR 841
Cdd:pfam07111 356 ILQRALQDKAAEVEVERMSAKGLQME--LSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 842 LEAELETVSRKTHDASGqlvlisqeLLRKERSLNELRVLLLEANRHSPGPERDLSREVHkaEWRIKEQKLKDDIR---GL 918
Cdd:pfam07111 434 LSNRLSYAVRKVHTIKG--------LMARKVALAQLRQESCPPPPPAPPVDADLSLELE--QLREERNRLDAELQlsaHL 503
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677501764 919 REKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDKAQTI 989
Cdd:pfam07111 504 IQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEI 574
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-935 |
3.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 712 QAIEFLKEQIslaekkmldyERLQRAEAQGkQEVESLREKLLVAENRLQAVEALCSSQhthmiESNDISEETIRTKETVE 791
Cdd:COG4913 242 EALEDAREQI----------ELLEPIRELA-ERYAAARERLAELEYLRAALRLWFAQR-----RLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 792 GLQDKLNKRDKEVTALTSQTEMLRAQVSAleskckSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKE 871
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 872 RSLNELRvllLEANRHSPGPERDLSR-EVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQR 935
Cdd:COG4913 380 EEFAALR---AEAAALLEALEEELEAlEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
510-980 |
3.05e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 510 LRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQevagLKDKVQQATSEnmglMDNWKSKLDSLASDH 589
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE----LQEELEELEEE----LEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 590 QKsLEDLKATLnsgpgAQQKEIGELKAVMEGIkmehQLELGNLQAKHDlETAMHVKEKEALREKLQEAQEELAGLQRHWR 669
Cdd:COG4717 119 EK-LEKLLQLL-----PLYQELEALEAELAEL----PERLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 670 AQLEVQASQHRLELQEAQDQRRDAELRVHELEkldveyrgqaQAIEFLKEQISLAEKKMLDYERLQR-AEAQGKQEVESL 748
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQ----------EELEELEEELEQLENELEAAALEERlKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 749 REKLLVAENRLQAVEA-------------------LCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTS 809
Cdd:COG4717 258 LLALLGLGGSLLSLILtiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 810 QTEMLRAQVSALESKCKSGEKKVDALLKE--KRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANrh 887
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEelEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-- 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 888 spGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALD 967
Cdd:COG4717 416 --GELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWA 493
|
490
....*....|...
gi 1677501764 968 QAQQVEKLMEAMR 980
Cdd:COG4717 494 ALKLALELLEEAR 506
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
358-1011 |
3.51e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 358 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYvaeaeeklqrarllvESVRKEKVDLSNQLEE 437
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESS---------------REIVKSYENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 438 ERRKVEDLQFRVEEesitkgdLELTTVAEKSRVLQLEE---ELTLRRGEI-----EELQQclLHSGPPPPDHPDAAEILR 509
Cdd:TIGR00606 253 RLKEIEHNLSKIMK-------LDNEIKALKSRKKQMEKdnsELELKMEKVfqgtdEQLND--LYHNHQRTVREKERELVD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 510 LRERLLSASKEhQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGL----MDNWKSKLDSL 585
Cdd:TIGR00606 324 CQRELEKLNKE-RRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFserqIKNFHTLVIER 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 586 ASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQakhdletamhvKEKEALREKLQEAQEELAGLQ 665
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE-----------KKQEELKFVIKELQQLEGSSD 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 666 RHWRAQLEVQASQHRLELQEAQDQRRDAELRVHEL--EKLDVEYRGQAQAIEF---------LKEQISLAEKKMLDYERL 734
Cdd:TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEVKSLqnEKADLDRKLRKLDQEMeqlnhhtttRTQMEMLTKDKMDKDEQI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 735 QRAEAQGKQEVESLrekLLVAENRLQAVEALCSsqhthmiESNDISEetirTKETVEGLQDKLNKRDKEVTALTSQTEML 814
Cdd:TIGR00606 552 RKIKSRHSDELTSL---LGYFPNKKQLEDWLHS-------KSKEINQ----TRDRLAKLNKELASLEQNKNHINNELESK 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 815 RAQVSALESK------CKSGEKKVDALLKEKRRLEAELETVSRKTH----------DASGQLVLISQELLRKERSLNELR 878
Cdd:TIGR00606 618 EEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAvysqfitqltDENQSCCPVCQRVFQTEAELQEFI 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 879 VLLLEANRHSPGPERDLSREVHKAEWRIKE------------QKLKDDIRGLREKLTGLDKEKslsdQRRYSLIDRSSap 946
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEmlglapgrqsiiDLKEKEIPELRNKLQKVNRDI----QRLKNDIEEQE-- 771
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 947 ellRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDK-AQTIGNSGSANGI--HQQDKAQKQEDKH 1011
Cdd:TIGR00606 772 ---TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKiAQQAAKLQGSDLDrtVQQVNQEKQEKQH 836
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
432-929 |
3.98e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 432 SNQLEEERRKVEDLQFRVEEEsITKGDLELTTVAEKSRVL-----QLEEELTLRRGEIEELQQCLLHSgppppdhpdAAE 506
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE-IKKKEKELEKLNNKYNDLkkqkeELENELNLLEKEKLNIQKNIDKI---------KNK 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 507 ILRLRERLLSAskehqresgvlrDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglMDNWKSKLDSLA 586
Cdd:TIGR04523 196 LLKLELLLSNL------------KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE----ISNTQTQLNQLK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 587 SDHQKSLEDLKATLNSGPGAQQKeIGELKAVMEGIKMEhqLELGNLQAKHDLEtamhvkekEALREKLQEAQEELAglqr 666
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKK-IKELEKQLNQLKSE--ISDLNNQKEQDWN--------KELKSELKNQEKKLE---- 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 667 hwraQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEyrgqaqaiefLKEQIslaEKKMLDYERLQRAEAQGKQEVE 746
Cdd:TIGR04523 325 ----EIQNQISQNNKIISQLNEQISQLKKELTNSESENSE----------KQREL---EEKQNEIEKLKKENQSYKQEIK 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 747 SLREKLLVAENRLQAVEalcssqhthmiESNDISEETIRTKETveglqdKLNKRDKEVTALTSQTEMLRAQVSALESKCK 826
Cdd:TIGR04523 388 NLESQINDLESKIQNQE-----------KLNQQKDEQIKKLQQ------EKELLEKEIERLKETIIKNNSEIKDLTNQDS 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 827 SGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRvlllEANRHSPGPERDLSREVhkAEWRI 906
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLN----EEKKELEEKVKDLTKKI--SSLKE 524
|
490 500
....*....|....*....|...
gi 1677501764 907 KEQKLKDDIRGLREKLTGLDKEK 929
Cdd:TIGR04523 525 KIEKLESEKKEKESKISDLEDEL 547
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
623-764 |
4.86e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 623 MEHQLELGNLQAKhDLETAMHVKEKEALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQRRDAELRVHELEK 702
Cdd:COG1579 3 PEDLRALLDLQEL-DSELDRLEHRLKELPAELAELEDELAALEA--------RLEAAKTELEDLEKEIKRLELEIEEVEA 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1677501764 703 LDVEYRGQAQA-------------IEFLKEQISLAEKKMLDY----ERLQRAEAQGKQEVESLREKLLVAENRLQAVEA 764
Cdd:COG1579 74 RIKKYEEQLGNvrnnkeyealqkeIESLKRRISDLEDEILELmeriEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
652-980 |
5.29e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 652 EKLQEAQEELAGLQRHWRAQLE-----VQASQHRLELQEAQDQRRDAELR-VHELEKLDVEYRGQAQAIEFLKEQIslaE 725
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIErlekfIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKEL---E 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 726 KKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDI---SEETIRTKETVEGLQDKLNKRDK 802
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELkekAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 803 EVTALTSQTEMLRAQVSALESKcksgEKKVDALLKEKRRLEAELEtvsrkthdasgqlvlisqELLRKERSLNELRVLLL 882
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLE------------------ELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 883 EANRH----SPGPERDLSREVHKAEWRIKEqkLKDDIRGLREKLTGLDKEKS----------------------LSDQRR 936
Cdd:PRK03918 373 ELERLkkrlTGLTPEKLEKELEELEKAKEE--IEEEISKITARIGELKKEIKelkkaieelkkakgkcpvcgreLTEEHR 450
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1677501764 937 YSLIDRSSApELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMR 980
Cdd:PRK03918 451 KELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
358-782 |
9.65e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 358 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVR---------KEK 428
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpNPA 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 429 VDLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEIL 508
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 509 --------RLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKS 580
Cdd:TIGR00618 597 qdlteklsEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLA 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 581 KLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLEtamhvKEKEALREKLQEAQEE 660
Cdd:TIGR00618 677 SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA-----AREDALNQSLKELMHQ 751
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 661 ---------LAGLQRHWRAQLEVQASQHRLEL-QEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEqislaekkmLD 730
Cdd:TIGR00618 752 artvlkartEAHFNNNEEVTAALQTGAELSHLaAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN---------LQ 822
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1677501764 731 YERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEE 782
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQL 874
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
411-950 |
1.03e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 411 EEKLQRARLLVESVRKEKVDLSNQLEEERRKVEdlqfRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEELQqc 490
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIE----RLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAE-- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 491 llhsGPPPPDHPDAAEILRLRERLL-----SASKEHQRESGVLRDK-----YEKALKAYQAEVDKLRAANEKYAQ----- 555
Cdd:PRK01156 263 ----SDLSMELEKNNYYKELEERHMkiindPVYKNRNYINDYFKYKndienKKQILSNIDAEINKYHAIIKKLSVlqkdy 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 556 ----EVAGLKDKVQQATSENMGLMDNWKSKLDSLAS------DHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIK--- 622
Cdd:PRK01156 339 ndyiKKKSRYDDLNNQILELEGYEMDYNSYLKSIESlkkkieEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINvkl 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 623 MEHQLELGNLQAKhdletamhvkeKEALREKLQEAQEELAGLQRHWR-----AQLEVQASQHRLELQEAQDQRRDAELRV 697
Cdd:PRK01156 419 QDISSKVSSLNQR-----------IRALRENLDELSRNMEMLNGQSVcpvcgTTLGEEKSNHIINHYNEKKSRLEEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 698 HELE--KLDVEYRGQAQAIEFL-KEQIslaEKKMLDYERLQRAEAQGKQEVESLREkLLVAENRLQAVEALCSSQHTHMI 774
Cdd:PRK01156 488 IEIEvkDIDEKIVDLKKRKEYLeSEEI---NKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEEIKNRYKSLKLEDL 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 775 ESNDIS---EETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALL-------KEKRRLEA 844
Cdd:PRK01156 564 DSKRTSwlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEAnnlnnkyNEIQENKI 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 845 ELETVSRKTHDASGQlvliSQELLRKERSLNELRVLLLEANRHSPGPERDLSR-EVHKAEWRIKEQKLKDDIRGLREKLT 923
Cdd:PRK01156 644 LIEKLRGKIDNYKKQ----IAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDaKANRARLESTIEILRTRINELSDRIN 719
|
570 580 590
....*....|....*....|....*....|....*.
gi 1677501764 924 GLDK--------EKSLSDQRRY-SLIDRSSAPELLR 950
Cdd:PRK01156 720 DINEtlesmkkiKKAIGDLKRLrEAFDKSGVPAMIR 755
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
606-974 |
1.15e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 606 AQQKEIGELkAVMEGIKMEH-----------QLELGNLQAKHDLETAMHV-KEKEALREKLQEAQEELAGLQRHWRAQLE 673
Cdd:pfam02463 116 VTKKEVAEL-LESQGISPEAynflvqggkieIIAMMKPERRLEIEEEAAGsRLKRKKKEALKKLIEETENLAELIIDLEE 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 674 VQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLL 753
Cdd:pfam02463 195 LKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKEN 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 754 VAENRLQAVEALCSSQHTHMIESNdiSEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVD 833
Cdd:pfam02463 275 KEEEKEKKLQEEELKLLAKEEEEL--KSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 834 ALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEanrhspgPERDLSREVHKAEWRIKEQKLKD 913
Cdd:pfam02463 353 AEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE-------EEKEAQLLLELARQLEDLLKEEK 425
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677501764 914 DIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVEK 974
Cdd:pfam02463 426 KEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
645-852 |
1.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 645 KEKEALREKLQEAQEELAGLQR------HWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKldvEYRGQAQAIEFLK 718
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKeekallKQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 719 EQISlaekKMLDYerLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEG----LQ 794
Cdd:COG4942 104 EELA----ELLRA--LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAeraeLE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 795 DKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRK 852
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
405-981 |
3.78e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 405 QYVAEAEEKLQRARLLVESVrKEKVDLSNQLEEERRKVEDLQ------FRVEEESITKGDLEltTVAEKSRVLQLEEELT 478
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLEpirelaERYAAARERLAELE--YLRAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 479 LRRGEIEELQQclLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVA 558
Cdd:COG4913 292 LLEAELEELRA--ELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 559 GLKdkVQQATSEnmglmdnwkskldslasdhqkslEDLKAtlnsgpgaQQKEIGELKAVMEGIKMEHQlelgnlQAKHDL 638
Cdd:COG4913 370 ALG--LPLPASA-----------------------EEFAA--------LRAEAAALLEALEEELEALE------EALAEA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 639 ETAmhvkeKEALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQ-RRDAELRVHEL----EKLDVE------- 706
Cdd:COG4913 411 EAA-----LRDLRRELRELEAEIASLER--------RKSNIPARLLALRDAlAEALGLDEAELpfvgELIEVRpeeerwr 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 707 ------YRGQA-----------QAIEFLkEQISLAEKkmLDYERLQRAEAQGKQEV---ESLREKLLVAENRLQA-VEAL 765
Cdd:COG4913 478 gaiervLGGFAltllvppehyaAALRWV-NRLHLRGR--LVYERVRTGLPDPERPRldpDSLAGKLDFKPHPFRAwLEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 766 CSSQHTHM-IESndiSEETIRTKE--TVEGL--------------------------QDKLNKRDKEVTALTSQTEMLRA 816
Cdd:COG4913 555 LGRRFDYVcVDS---PEELRRHPRaiTRAGQvkgngtrhekddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEE 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 817 QVSALESKCKS----------------GEKKVDALLKEKRRLEAELETVSrkthDASGQLVLISQELLRKERSLNELRVL 880
Cdd:COG4913 632 RLEALEAELDAlqerrealqrlaeyswDEIDVASAEREIAELEAELERLD----ASSDDLAALEEQLEELEAELEELEEE 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 881 LLEANRHspgpERDLSREVHKAEwriKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLmsteD 960
Cdd:COG4913 708 LDELKGE----IGRLEKELEQAE---EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERI----D 776
|
650 660
....*....|....*....|.
gi 1677501764 961 ALRDALDQAQqvEKLMEAMRS 981
Cdd:COG4913 777 ALRARLNRAE--EELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
404-669 |
4.22e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 404 EQYVAE-AEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDlqFRVEEESI---TKGDLELTTVAE-KSRVLQLEEELT 478
Cdd:COG3206 159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLVdlsEEAKLLLQQLSElESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 479 LRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKaLKAYQAEVDKLRAANEKYAQEV- 557
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPD-VIALRAQIAALRAQLQQEAQRIl 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 558 AGLKDKVQQAtsenmglmdnwKSKLDSLasdhQKSLEDLKATLNSGPGAQQkeigelkavmegikmehqlELGNLQAKHD 637
Cdd:COG3206 316 ASLEAELEAL-----------QAREASL----QAQLAQLEARLAELPELEA-------------------ELRRLEREVE 361
|
250 260 270
....*....|....*....|....*....|..
gi 1677501764 638 LETAMHvkekEALREKLQEAQEELAGLQRHWR 669
Cdd:COG3206 362 VARELY----ESLLQRLEEARLAEALTVGNVR 389
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
406-761 |
5.01e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 406 YVAEAEEKLQRARLLVEsVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLE---------LTTVAEksrVLQLEEE 476
Cdd:COG3096 273 YMRHANERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEqdyqaasdhLNLVQT---ALRQQEK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 477 LTLRRGEIEELQQCLLHsgPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDkYEKALK-------AYQAEVDKLRAA 549
Cdd:COG3096 349 IERYQEDLEELTERLEE--QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD-YQQALDvqqtraiQYQQAVQALEKA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 550 N----------EKYAQEVAGLKDKVQQATSENMGLmdnwKSKL---DSLASDHQKSLEDLKATlnSGPGAQQKEIGELKA 616
Cdd:COG3096 426 RalcglpdltpENAEDYLAAFRAKEQQATEEVLEL----EQKLsvaDAARRQFEKAYELVCKI--AGEVERSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 617 VMEGIKmEHQLELGNLQAkhdleTAMHVKEKEALREKLQEAQEELAGL------QRHWRAQLEVQASQHRLELQEAQDQR 690
Cdd:COG3096 500 LLRRYR-SQQALAQRLQQ-----LRAQLAELEQRLRQQQNAERLLEEFcqrigqQLDAAEELEELLAELEAQLEELEEQA 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 691 RDA--------------ELRVHELEKLDVEYRGQAQAIEFLKEQI--SLAEKKMLDYERLQRAEAQgkQEVESLREKLLV 754
Cdd:COG3096 574 AEAveqrselrqqleqlRARIKELAARAPAWLAAQDALERLREQSgeALADSQEVTAAMQQLLERE--REATVERDELAA 651
|
....*..
gi 1677501764 755 AENRLQA 761
Cdd:COG3096 652 RKQALES 658
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
402-720 |
5.13e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 402 QHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLeEERRKVEDlqfrVEEESITKGDLELTTVAEKSRvLQLEEELTLRR 481
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLEE----AEKARQAEMDRQAAIYAEQER-MAMERERELER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 482 GEIEELQQCLlhsgPPPPDHPDAAEILRLRErLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKyAQEVAGLK 561
Cdd:pfam17380 353 IRQEERKREL----ERIRQEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQ-KVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 562 DKVQQATSENMGLMDNWKS----KLDSLASDHQKSLEDLKatlnsgpgaqQKEIGELKAVMEGIKMEHQLELGNLQAKHD 637
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAremeRVRLEEQERQQQVERLR----------QQEEERKRKKLELEKEKRDRKRAEEQRRKI 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 638 LETAMHVKEKEALREK---------LQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYR 708
Cdd:pfam17380 497 LEKELEERKQAMIEEErkrkllekeMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
330
....*....|..
gi 1677501764 709 GQAQAIEFLKEQ 720
Cdd:pfam17380 577 MMRQIVESEKAR 588
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
373-935 |
5.75e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 373 AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEE 452
Cdd:pfam12128 439 EYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEER 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 453 SITKGDLELTTVAEKSRVLQ-LEEELTLRRGEI------EELQQCLLHSGPPPPDHPDAAEI--LRLRERLLSASKEHQR 523
Cdd:pfam12128 519 QSALDELELQLFPQAGTLLHfLRKEAPDWEQSIgkvispELLHRTDLDPEVWDGSVGGELNLygVKLDLKRIDVPEWAAS 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 524 ESgVLRDKYEKALKAYQAEVDKlraanekyaqevaglkdkvQQATSENMGLMdnwKSKLDSLasdhQKSLEDLKATLNSG 603
Cdd:pfam12128 599 EE-ELRERLDKAEEALQSAREK-------------------QAAAEEQLVQA---NGELEKA----SREETFARTALKNA 651
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 604 PGAQQKEIGELKavmegikmehqlelgNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLEL 683
Cdd:pfam12128 652 RLDLRRLFDEKQ---------------SEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEK 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 684 QEA----QDQRRDAELRVHelEKLDVEYRGQAQAIEFLKEQI--SLAeKKMLDYERLQRAeaqgKQEVESLREKLLVAEN 757
Cdd:pfam12128 717 QAYwqvvEGALDAQLALLK--AAIAARRSGAKAELKALETWYkrDLA-SLGVDPDVIAKL----KREIRTLERKIERIAV 789
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 758 RLQAV-EALCSSQHTHMIESNDISEETIRTKETVEGLQDKLnkrdkevTALTSQTEMLRAQvsaLESKCKSGEKKVDALL 836
Cdd:pfam12128 790 RRQEVlRYFDWYQETWLQRRPRLATQLSNIERAISELQQQL-------ARLIADTKLRRAK---LEMERKASEKQQVRLS 859
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 837 KEKRRLEAELETVSR-KTHDASGQLVLISQELLRKERSLNELRVLLLEA----NRHSPGPERDLSREVHKAEWrikeQKL 911
Cdd:pfam12128 860 ENLRGLRCEMSKLATlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESvkkyVEHFKNVIADHSGSGLAETW----ESL 935
|
570 580
....*....|....*....|....
gi 1677501764 912 KDDIRGLREKLTGLDKEKSLSDQR 935
Cdd:pfam12128 936 REEDHYQNDKGIRLLDYRKLVPYL 959
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
350-867 |
6.56e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 6.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 350 KISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVESVRKEKV 429
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN----KIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 430 DLSNQLEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRvlQLEEELTLRRGEIEELQQcllhsgppppdhpdaaEILR 509
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLE--EIQNQISQNNKIISQLNE----------------QISQ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 510 LRERLLSASKEHQresgvlrdKYEKALKAYQAEVDKLRAANEKYAQEVAGLKD-------KVQQATSENMGLmdnwKSKL 582
Cdd:TIGR04523 347 LKKELTNSESENS--------EKQRELEEKQNEIEKLKKENQSYKQEIKNLESqindlesKIQNQEKLNQQK----DEQI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 583 DSLASDHQ---KSLEDLKATLNSgpgaQQKEIGELKavmegiKMEHQLELgnlqakhdletamHVKEKEALREKLQEaqe 659
Cdd:TIGR04523 415 KKLQQEKElleKEIERLKETIIK----NNSEIKDLT------NQDSVKEL-------------IIKNLDNTRESLET--- 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 660 elaglqrhwraQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMldyERLQRAEA 739
Cdd:TIGR04523 469 -----------QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI---EKLESEKK 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 740 QGKQEVESLREKLLVAENRLQavealcSSQHTHMIESNDisEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVS 819
Cdd:TIGR04523 535 EKESKISDLEDELNKDDFELK------KENLEKEIDEKN--KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE 606
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1677501764 820 ALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQEL 867
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
672-922 |
6.64e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 672 LEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERlQRAEAqgKQEVESLREK 751
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER-EREEL--AEEVRDLRER 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 752 LLVAENRLQAVEALCSsqhthmIESNDIseetirtkETVEGLQDKLNKRDKEV-----------TALTSQTEMLRAQVSA 820
Cdd:PRK02224 288 LEELEEERDDLLAEAG------LDDADA--------EAVEARREELEDRDEELrdrleecrvaaQAHNEEAESLREDADD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 821 LESKCKsgEKKVDAllkekRRLEAELETVSRKTHDASGQLvlisqELLRKERSLNELRVLLLEANRHSPGPERDLSREvH 900
Cdd:PRK02224 354 LEERAE--ELREEA-----AELESELEEAREAVEDRREEI-----EELEEEIEELRERFGDAPVDLGNAEDFLEELRE-E 420
|
250 260
....*....|....*....|..
gi 1677501764 901 KAEWRIKEQKLKDDIRGLREKL 922
Cdd:PRK02224 421 RDELREREAELEATLRTARERV 442
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
355-475 |
8.22e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 355 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVESVRKEK 428
Cdd:COG2268 212 TEIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERER 290
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1677501764 429 -VDLSNQLEEERRKVEDLQFRVEEEsitkgdlelttvAEKSRVLQLEE 475
Cdd:COG2268 291 eIELQEKEAEREEAELEADVRKPAE------------AEKQAAEAEAE 326
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
461-724 |
8.74e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 461 LTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERLLSASKEHQresgvlrdKYEKALKAYQ 540
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 541 AEVDKLRAANEKYAQEVAGLKDKVQQ--ATSENMGLMDNWKSKLDS-LASDHQKSLEDLKATLNsgpgAQQKEIGELKAV 617
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPeDFLDAVRRLQYLKYLAP----ARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 618 MEGIKmehQLELGNLQAKHDLETAMhvKEKEALREKLQEAQEELAGLQrhwrAQLEVQASQHRLELQEAQDQRRDAELRV 697
Cdd:COG4942 159 LAELA---ALRAELEAERAELEALL--AELEEERAALEALKAERQKLL----ARLEKELAELAAELAELQQEAEELEALI 229
|
250 260
....*....|....*....|....*..
gi 1677501764 698 HELEKLDVEYRGQAQAIEFLKEQISLA 724
Cdd:COG4942 230 ARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
643-1008 |
9.24e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 643 HVKEKEALREKLQEAQ--------EELAGLQRHWR------------AQLEVQASQHRLELQEAQD---QRRDAELRVHE 699
Cdd:pfam12128 266 GYKSDETLIASRQEERqetsaelnQLLRTLDDQWKekrdelngelsaADAAVAKDRSELEALEDQHgafLDADIETAAAD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 700 LEKLD---VEYRGQAQAIEFLKEQISLAEKKmldYERL-QRAEAQGKQEVESLREKL-----------LVAENRLQAVEA 764
Cdd:pfam12128 346 QEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRrSKIKEQNNRDIAGIKDKLakireardrqlAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 765 LCSSQHTHMIesNDISEETIRTKETVEGLQDKLNkrdkEVTAltsqTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEA 844
Cdd:pfam12128 423 ELREQLEAGK--LEFNEEEYRLKSRLGELKLRLN----QATA----TPELLLQLENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 845 ELETVSRKTHDASGQLVLISQELLRKERSLNELRvLLLEANRHSpgPERDLSREVhkAEWRIKEQKLKDDIRGLREKLTG 924
Cdd:pfam12128 493 ELRQARKRRDQASEALRQASRRLEERQSALDELE-LQLFPQAGT--LLHFLRKEA--PDWEQSIGKVISPELLHRTDLDP 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 925 LDKEKSLSDQRR-YSL---IDRSSAPELLRLQHQLMSTEDALRDALDQAQQVE------------KLMEAMRSCPDKAQT 988
Cdd:pfam12128 568 EVWDGSVGGELNlYGVkldLKRIDVPEWAASEEELRERLDKAEEALQSAREKQaaaeeqlvqangELEKASREETFARTA 647
|
410 420
....*....|....*....|....
gi 1677501764 989 IGNS----GSANGIHQQDKAQKQE 1008
Cdd:pfam12128 648 LKNArldlRRLFDEKQSEKDKKNK 671
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
362-702 |
2.50e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.58 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 362 KEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQH-----EQYVAEAEEKLQRA------------RLLVESV 424
Cdd:pfam13166 92 IEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADFldecwKKIKRKKNSALSEAlngfkyeanfksRLLREIE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 425 R------------KEKVDLSNQLEEERRKVEDLQFRVEE-ESITKGDLELTTVAEKSRVLqleEELTLRRGEIEELQQCL 491
Cdd:pfam13166 172 KdnfnagvllsdeDRKAALATVFSDNKPEIAPLTFNVIDfDALEKAEILIQKVIGKSSAI---EELIKNPDLADWVEQGL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 492 -LHSGPPPPDHPDAAEILRLRERLLSA-----SKEHQRESGVLRDKYEKALKAYQAEVDKLRA---ANEKYAQEVAGLKD 562
Cdd:pfam13166 249 eLHKAHLDTCPFCGQPLPAERKAALEAhfddeFTEFQNRLQKLIEKVESAISSLLAQLPAVSDlasLLSAFELDVEDIES 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 563 KVQQATSENMGLMDNWKSKLDSLASDhqKSLEDLKATLNSGPGAQQKeigelkavmegikmehqleLGNLQAKHDLETAM 642
Cdd:pfam13166 329 EAEVLNSQLDGLRRALEAKRKDPFKS--IELDSVDAKIESINDLVAS-------------------INELIAKHNEITDN 387
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1677501764 643 HVKEKEALREKL-----QEAQEELAGLQRHWRAqLEVQASQHRLELQEAQDQRRDAELRVHELEK 702
Cdd:pfam13166 388 FEEEKNKAKKKLrlhlvEEFKSEIDEYKDKYAG-LEKAINSLEKEIKNLEAEIKKLREEIKELEA 451
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
512-798 |
2.59e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 512 ERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQatsenmglMDNWKSKLDSL-ASDH- 589
Cdd:pfam06160 110 DELLESEEKNREEVEELKDKYRELRKTLLANRFSYGPAIDELEKQLAEIEEEFSQ--------FEELTESGDYLeAREVl 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 590 ---QKSLEDLKATLNSGPG----------AQQKEIGEL--KAVMEGIKMEH---QLELGNLQAKHD-LETAMHVKEKEAL 650
Cdd:pfam06160 182 eklEEETDALEELMEDIPPlyeelktelpDQLEELKEGyrEMEEEGYALEHlnvDKEIQQLEEQLEeNLALLENLELDEA 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 651 REKLQEAQEELAGL----QRHWRAQLEVQASQHRLE--LQEAQDQRRDAELrvhELEKLDVEYRGQAQAIEF---LKEQI 721
Cdd:pfam06160 262 EEALEEIEERIDQLydllEKEVDAKKYVEKNLPEIEdyLEHAEEQNKELKE---ELERVQQSYTLNENELERvrgLEKQL 338
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 722 SLAEKkmlDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcssQHTHMIES-NDISEETIRTKETVEGLQDKLN 798
Cdd:pfam06160 339 EELEK---RYDEIVERLEEKEVAYSELQEELEEILEQLEEIEE----EQEEFKESlQSLRKDELEAREKLDEFKLELR 409
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
703-973 |
2.61e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 703 LDVEYRG----QAQAI------EFLKEQISLAekkmldYERLQRAEAQGKQEVESLREKLLVAENRLQAvealcssqhth 772
Cdd:COG3206 138 IEISYTSpdpeLAAAVanalaeAYLEQNLELR------REEARKALEFLEEQLPELRKELEEAEAALEE----------- 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 773 MIESNDIseetIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLkekrrleaeletvsrk 852
Cdd:COG3206 201 FRQKNGL----VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL---------------- 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 853 thdASGQLVLISQELLRKERSLNELRVLLLEANrhspgPE-RDLSREVHKAEWRIKEQ------KLKDDIRGLREKLTGL 925
Cdd:COG3206 261 ---QSPVIQQLRAQLAELEAELAELSARYTPNH-----PDvIALRAQIAALRAQLQQEaqrilaSLEAELEALQAREASL 332
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1677501764 926 dkEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVE 973
Cdd:COG3206 333 --QAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
357-486 |
3.73e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVESVRKEK--VDLSNQ 434
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1677501764 435 LEEERRKVEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEE 486
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
519-752 |
4.74e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 519 KEHQRESGVL---RDKYEKALKAYQAEVDKLRAANekyAQEVAGLKDKVqqatSENMGLMDNWKSKLDSLA---SDHQKS 592
Cdd:PHA02562 177 RELNQQIQTLdmkIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKY----DELVEEAKTIKAEIEELTdelLNLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 593 LEDLKATLNsgpgAQQKEIGELKAVMEGIKMEHqlelgNLQAKHDL-ETAMHVKEKEAlrEKLQEAQEELAGLQrhwraq 671
Cdd:PHA02562 250 IEDPSAALN----KLNTAAAKIKSKIEQFQKVI-----KMYEKGGVcPTCTQQISEGP--DRITKIKDKLKELQ------ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 672 levqasqhrLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYER-LQRAEAQG---KQEVES 747
Cdd:PHA02562 313 ---------HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAaIEELQAEFvdnAEELAK 383
|
....*
gi 1677501764 748 LREKL 752
Cdd:PHA02562 384 LQDEL 388
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
357-969 |
5.11e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 357 LQEALKEKQQHIEQLLaERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLE 436
Cdd:TIGR00618 158 LKAKSKEKKELLMNLF-PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 437 EERRKVEDLQFRVE--EESITKGDLELTTVAEKSRVLQLEEELTLRRGEIEelQQCllHSGPPPPDHPDAAEILRLRERL 514
Cdd:TIGR00618 237 QTQQSHAYLTQKREaqEEQLKKQQLLKQLRARIEELRAQEAVLEETQERIN--RAR--KAAPLAAHIKAVTQIEQQAQRI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 515 LSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEvaglkDKVQQATSENMGLMDNwkskldslaSDHQKSLE 594
Cdd:TIGR00618 313 HTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE-----IHIRDAHEVATSIREI---------SCQQHTLT 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 595 DLKATLnsgpgAQQKEIGELKavmEGIKMEHQLELGNLQAKHDLETAmhvkEKEALREKLQeaqeelaglqrhwRAQLEV 674
Cdd:TIGR00618 379 QHIHTL-----QQQKTTLTQK---LQSLCKELDILQREQATIDTRTS----AFRDLQGQLA-------------HAKKQQ 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 675 QASQHRLELQE--AQDQRRDAELRVHELEKLdveyrgqAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKL 752
Cdd:TIGR00618 434 ELQQRYAELCAaaITCTAQCEKLEKIHLQES-------AQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPL 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 753 lvaenrlqavEALCSSQHTHMIESNDISEETIRTK---ETVEGLQDKLNKRDKEVTALTSQTEMLRAQV-------SALE 822
Cdd:TIGR00618 507 ----------CGSCIHPNPARQDIDNPGPLTRRMQrgeQTYAQLETSEEDVYHQLTSERKQRASLKEQMqeiqqsfSILT 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 823 SKCKSGEKKVDALLKEKRRLEAELETVSRkthdASGQLVLISQELLRK-ERSLNELRVLLLEANR---------HSPGPE 892
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKLSE----AEDMLACEQHALLRKlQPEQDLQDVRLHLQQCsqelalkltALHALQ 652
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1677501764 893 RDLSREVHKAEW-RIKEQKLKDDIRGLREkltgLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQA 969
Cdd:TIGR00618 653 LTLTQERVREHAlSIRVLPKELLASRQLA----LQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENA 726
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
815-992 |
6.37e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 815 RAQVSALEskcksgekKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKE---RSLNELRVLLLEANRHSPGP 891
Cdd:PLN02939 149 QARLQALE--------DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEileEQLEKLRNELLIRGATEGLC 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 892 ERDLSREVHKaewrIKEQK--LKDDIRGLREKLTG----------LDKEKSLSDQRRYSLIDR--SSAPELLRL----QH 953
Cdd:PLN02939 221 VHSLSKELDV----LKEENmlLKDDIQFLKAELIEvaeteervfkLEKERSLLDASLRELESKfiVAQEDVSKLsplqYD 296
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1677501764 954 QLMSTEDALRDALDQA-QQVEK---LMEAMRSCPDKAQTIGNS 992
Cdd:PLN02939 297 CWWEKVENLQDLLDRAtNQVEKaalVLDQNQDLRDKVDKLEAS 339
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
530-670 |
6.39e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 40.05 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 530 DKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKV---QQATSENMGLMDNWKSKLDSLASDH-----QKSLEDLKATLN 601
Cdd:cd22656 110 EELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLtdfENQTEKDQTALETLEKALKDLLTDEggaiaRKEIKDLQKELE 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1677501764 602 SgpgAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEK--EALREKLQEAQEELAGLQRHWRA 670
Cdd:cd22656 190 K---LNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAADTdlDNLLALIGPAIPALEKLQGAWQA 257
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
509-887 |
7.20e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 509 RLRERLLSASKEHQRESGVLRDKyEKALKAYQAEVDKLRAANEKYAQEVAGLKD---KVQQATSENmGLMDNWKSKLDSL 585
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEE-QYRLVEMARELEELSARESDLEQDYQAASDhlnLVQTALRQQ-EKIERYQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 586 ASD----------HQKSLEDLKATLnsgpGAQQKEIGELKA----VMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALr 651
Cdd:COG3096 360 TERleeqeevveeAAEQLAEAEARL----EAAEEEVDSLKSqladYQQALDVQQTRAIQYQQAVQALEKARALCGLPDL- 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 652 eklqeAQEELAGLQRHWRAQLEvQASQHRLELQE----AQDQRRDAELRVHELEKL--DVEyRGQA--QAIEFLKEQISl 723
Cdd:COG3096 435 -----TPENAEDYLAAFRAKEQ-QATEEVLELEQklsvADAARRQFEKAYELVCKIagEVE-RSQAwqTARELLRRYRS- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 724 aekkmldyerlQRAEAQgkqEVESLREKLLVAENRLQA-------VEALCSSQHTHMIESNDISEETIRTKETVEGLQDK 796
Cdd:COG3096 507 -----------QQALAQ---RLQQLRAQLAELEQRLRQqqnaerlLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQ 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 797 LNKRDKEVTALTSQTEMLRAQVSALeskcksgEKKVDALLKEKRRLEAeLETVSRKTHDASGQLVLISQELLRKERSLNE 876
Cdd:COG3096 573 AAEAVEQRSELRQQLEQLRARIKEL-------AARAPAWLAAQDALER-LREQSGEALADSQEVTAAMQQLLEREREATV 644
|
410
....*....|.
gi 1677501764 877 LRVLLLEANRH 887
Cdd:COG3096 645 ERDELAARKQA 655
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
366-557 |
7.20e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 366 QHIEQL--LAERDLERAEVAKAtshICEVEKEIALLKAQheqyVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVE 443
Cdd:COG1579 4 EDLRALldLQELDSELDRLEHR---LKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 444 DLQFRVEE-------ESITKgdlELTTvaEKSRVLQLEEELTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLls 516
Cdd:COG1579 77 KYEEQLGNvrnnkeyEALQK---EIES--LKRRISDLEDEILELMERIEELEE----------------ELAELEAEL-- 133
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1677501764 517 asKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEV 557
Cdd:COG1579 134 --AELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
339-477 |
7.92e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 339 LLTETSSRYARKISgttALQEALKEKQQHIEQLLAERD-LERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRA 417
Cdd:COG0542 394 LIDEAAARVRMEID---SKPEELDELERRLEQLEIEKEaLKKEQDEASFERLAELRDELAELEEELE----ALKARWEAE 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 418 RLLVESVRKEKVDLSNQLEEERRKVEDLQfRVEEESITKGDLELTTV----------------------AEKSRVLQLEE 475
Cdd:COG0542 467 KELIEEIQELKEELEQRYGKIPELEKELA-ELEEELAELAPLLREEVteediaevvsrwtgipvgklleGEREKLLNLEE 545
|
..
gi 1677501764 476 EL 477
Cdd:COG0542 546 EL 547
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
355-971 |
8.30e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 355 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYV----AEAEEKLQRAR---LLVESVRKE 427
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLdttaAQQELRSKREQevtELKKALEEE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 428 KVDLSNQLEEERRK----VEDLQFRVEEESITKGDLELTTVAEKSRVLQLEEELTLrrgeieeLQQCLLHSGPPPPDHPD 503
Cdd:pfam01576 340 TRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRT-------LQQAKQDSEHKRKKLEG 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 504 AAEILRLRerllsaSKEHQRESGVLRDKYEKAlkayQAEVDKLRAA-------NEKYAQEVAGLKDKVQQATSEnmgLMD 576
Cdd:pfam01576 413 QLQELQAR------LSESERQRAELAEKLSKL----QSELESVSSLlneaegkNIKLSKDVSSLESQLQDTQEL---LQE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 577 NWKSKLDslASDHQKSLEDLKATLNSgpgaQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMhvkeKEALREKLQE 656
Cdd:pfam01576 480 ETRQKLN--LSTRLRQLEDERNSLQE----QLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT----LEALEEGKKR 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 657 AQEELAGLqrhwRAQLEVQASQH-RLELQEAQDQRrdaelrvhELEKLDVEYRGQAQAIEFLKEQIS-----LAEKKMLD 730
Cdd:pfam01576 550 LQRELEAL----TQQLEEKAAAYdKLEKTKNRLQQ--------ELDDLLVDLDHQRQLVSNLEKKQKkfdqmLAEEKAIS 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 731 ---YERLQRAEAQGK-------------QEVESLREKLLVAENRLQA-VEALCSSQ-----HTHMIESNDISEETI--RT 786
Cdd:pfam01576 618 aryAEERDRAEAEAReketralslaralEEALEAKEELERTNKQLRAeMEDLVSSKddvgkNVHELERSKRALEQQveEM 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 787 KETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSA-LESKCKSGEKKVDALLKEKRRLEAELEtvsrkthDASGQLVLISQ 865
Cdd:pfam01576 698 KTQLEELEDELQATEDAKLRLEVNMQALKAQFERdLQARDEQGEEKRRQLVKQVRELEAELE-------DERKQRAQAVA 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 866 ELLRKERSLNELRVLLLEANRhspGPERDLsREVHKAEWRIKE-QKLKDDIRGLREKLTGLDKEkslSDQRRYSLidrss 944
Cdd:pfam01576 771 AKKKLELDLKELEAQIDAANK---GREEAV-KQLKKLQAQMKDlQRELEEARASRDEILAQSKE---SEKKLKNL----- 838
|
650 660
....*....|....*....|....*..
gi 1677501764 945 APELLRLQHQLMSTEDALRdaldQAQQ 971
Cdd:pfam01576 839 EAELLQLQEDLAASERARR----QAQQ 861
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
633-1010 |
9.03e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 39.67 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 633 QAKHDLETAMHV--KEKEALR---EKLQEAQEEL--------AGLQRHWRAQLEVQASQHrlELQEAQDQRRDAELRVHE 699
Cdd:pfam05622 14 QRCHELDQQVSLlqEEKNSLQqenKKLQERLDQLesgddsgtPGGKKYLLLQKQLEQLQE--ENFRLETARDDYRIKCEE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 700 LEKLDVEYRGQAQAIEFLKEQISlAEKKMLDY-----ERLQRAEAQgkqeVESLREKLLVAENRLQAVEALCSSQHTHMI 774
Cdd:pfam05622 92 LEKEVLELQHRNEELTSLAEEAQ-ALKDEMDIlressDKVKKLEAT----VETYKKKLEDLGDLRRQVKLLEERNAEYMQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 775 ESNDISEETIRTKetveGLQDKLNKRDKEVTALTSQ--TEMLRAQvsALESKCKSGEKKVDALLKEKRRLEAELETVsRK 852
Cdd:pfam05622 167 RTLQLEEELKKAN----ALRGQLETYKRQVQELHGKlsEESKKAD--KLEFEYKKLEEKLEALQKEKERLIIERDTL-RE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 853 THDA--SGQLVlisqellrkERSLNELRVLLLEanrhSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKS 930
Cdd:pfam05622 240 TNEElrCAQLQ---------QAELSQADALLSP----SSDPGDNLAAEIMPAEIREKLIRLQHENKMLRLGQEGSYRERL 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677501764 931 LSDQRRysLIDRSSAPELLRLQHQLmstedALRDALDQAQQVEKLMEAMRSCPDKAQTIGNSGSANGIHQQDKAQKQEDK 1010
Cdd:pfam05622 307 TELQQL--LEDANRRKNELETQNRL-----ANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQSEL 379
|
|
| |
