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Conserved domains on  [gi|15227952|ref|NP_181781|]
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cold regulated 15b [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-60 1.35e-08

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00170:

Pssm-ID: 470693 [Multi-domain]  Cd Length: 255  Bit Score: 51.47  E-value: 1.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15227952    1 MAMSLSGAVLSGMGSSFHnVGAKQS-----GVGTVRVGRKSELVVV--AQRKKSLIYAVKSDGNILD 60
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFL-TGGKRSlallvGTGAAKVGARTLLVVAaaAQPKKSWIPAVKGGGNLVD 66
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-60 1.35e-08

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 51.47  E-value: 1.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15227952    1 MAMSLSGAVLSGMGSSFHnVGAKQS-----GVGTVRVGRKSELVVV--AQRKKSLIYAVKSDGNILD 60
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFL-TGGKRSlallvGTGAAKVGARTLLVVAaaAQPKKSWIPAVKGGGNLVD 66
 
Name Accession Description Interval E-value
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-60 1.35e-08

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 51.47  E-value: 1.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15227952    1 MAMSLSGAVLSGMGSSFHnVGAKQS-----GVGTVRVGRKSELVVV--AQRKKSLIYAVKSDGNILD 60
Cdd:PLN00170   1 SAAATSGAVLNGLGSSFL-TGGKRSlallvGTGAAKVGARTLLVVAaaAQPKKSWIPAVKGGGNLVD 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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