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Conserved domains on  [gi|16356947|ref|NP_443613|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Myripristis berndti]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.00e-75

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 217.09  E-value: 7.00e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.00e-75

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 217.09  E-value: 7.00e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 7.04e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 105.20  E-value: 7.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    20 IVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL-ASPLLTFTWAITILVL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 16356947    99 LTLGLIYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 7.43e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 93.26  E-value: 7.43e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947   8 IAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLAS-PL 86
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGW 89

                        90       100
                ....*....|....*....|....*...
gi 16356947  87 LTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.00e-75

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 217.09  E-value: 7.00e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 6.12e-59

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 176.72  E-value: 6.12e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    3 LLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 16356947   83 ASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-115 9.95e-56

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 168.91  E-value: 9.95e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIaITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00113   1 MNLISMLT-ISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWA 115
Cdd:MTH00113  80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 3.24e-48

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 149.70  E-value: 3.24e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLsMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00106   1 MNLM-LTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 5.20e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 133.87  E-value: 5.20e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 16356947   81 QLASPllTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 4.68e-41

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 131.64  E-value: 4.68e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   81 QLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.46e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 107.25  E-value: 2.46e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQM-NPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16356947   80 DQLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 7.04e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 105.20  E-value: 7.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    20 IVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL-ASPLLTFTWAITILVL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 16356947    99 LTLGLIYEWTQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 1.12e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 102.55  E-value: 1.12e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    3 LLSMIIAITAALSVILAIVSFWL-PQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 16356947   82 LASPLLTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 6-114 6.11e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 95.93  E-value: 6.11e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    6 MIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLASP 85
Cdd:MTH00055  10 ILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQI 87

                         90       100       110
                 ....*....|....*....|....*....|
gi 16356947   86 LLTFTWAITI-LVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00055  88 GLFGFWVMYLfLIILTIGLIYEWVKGGLEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 7.43e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 93.26  E-value: 7.43e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947   8 IAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLAS-PL 86
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElGW 89

                        90       100
                ....*....|....*....|....*...
gi 16356947  87 LTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 1.56e-25

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 92.62  E-value: 1.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    8 IAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL-ASPL 86
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFrEIGW 92

                         90       100
                 ....*....|....*....|....*....
gi 16356947   87 LTFTWAITILVLLTLGLIYEWTQGGLEWA 115
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-114 1.96e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 92.05  E-value: 1.96e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIaITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00018   1 YGLFILLI-FSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLY 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 16356947   81 QLASPLLTFTwAITILVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00018  80 NQIAPFGFWT-MVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 4.05e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 91.21  E-value: 4.05e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITaaLSVILAIVSFWLP-QMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00202   3 LILFMSILSIL--ISSLLFLVSWMLSfRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 16356947   80 DQLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 1.13e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.61  E-value: 1.13e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLP-QMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAaRSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   80 DQLASPLLTFTWAITILVLLTLGLIYEWTQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 30-114 7.39e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 75.74  E-value: 7.39e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947   30 PDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWG---DQLAspLLTFTWAITILVLLTLGLIYE 106
Cdd:MTH00030  39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSivfNQLN--LFSFWIVYTFLIVLAIGLAYE 114


                 ....*...
gi 16356947  107 WTQGGLEW 114
Cdd:MTH00030 115 WIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-114 5.46e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.69  E-value: 5.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947   10 ITAALSVILAI-VSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLlpLPWG---DQLAsp 85
Cdd:CHL00022  15 IISSLIPILAFlISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAmsfDVLG-- 90

                         90       100
                 ....*....|....*....|....*....
gi 16356947   86 LLTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:CHL00022  91 VSAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
6-114 4.17e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 55.52  E-value: 4.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    6 MIIAITAALSVILAIVSF----WLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPlpWG-- 79
Cdd:PRK07756  10 MIVLIFLLLGILLPVVALtlgrMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAva 87

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16356947   80 -DQLAspLLTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:PRK07756  88 yDKLG--LFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-114 6.37e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.06  E-value: 6.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMII---AITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLP--FSLRFFLVAILFLLFDLEIALLLP 75
Cdd:PRK07928   1 MNVYIPILvlgALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 16356947   76 lpWGDQLASpLLTFTWAITILVLLTLGL--IYEWTQGGLEW 114
Cdd:PRK07928  81 --WAVSFDA-LGVFGLVEMALFMLTVFVayAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
13-114 1.68e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.59  E-value: 1.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947   13 ALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARlPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLASpLLTFTWA 92
Cdd:PRK08489  26 LTTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLG-LFGLIEM 103

                         90       100
                 ....*....|....*....|..
gi 16356947   93 ITILVLLTLGLIYEWTQGGLEW 114
Cdd:PRK08489 104 LLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 6.62e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 49.51  E-value: 6.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16356947    1 MNLLSMIIAITAALSVILAIVSFWLPQMNPDYEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLpwgd 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 16356947   81 qLASPLLTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00092  77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-114 1.03e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.42  E-value: 1.03e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16356947   36 SPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLASpllTFTWAITILVLLTLGLIYEWTQGGLEW 114
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFY---NFWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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