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Conserved domains on  [gi|18394414|ref|NP_564010|]
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uridylyltransferase-like protein [Arabidopsis thaliana]

Protein Classification

ACT_UUR-ACR-like domain-containing protein( domain architecture ID 10141457)

ACT_UUR-ACR-like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlnD super family cl34500
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 76-234 8.08e-08

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG2844:

Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 53.22  E-value: 8.08e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  76 ADSDKVPTPVVIIDQDSDPDATvlEVTF--GDRLGALLDTMNALKNLGLNVVKANVY-------LDSsgkhnkFAITRAD 146
Cdd:COG2844 659 LRADDSGKPLVLIRPDPDRGGT--EVFVytPDRPGLFARIAGALAALGLNILDARIHttrdgyaLDT------FIVLDPD 730

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414 147 sGRKVEDPELLEAIRLTVINNLLefhpesssqlamgaafGVLPPTEPID---------VDIATHITIEDDG-PDRSLLFI 216
Cdd:COG2844 731 -GEPIDDPDRLERIEQALEEALS----------------GEVPLPEPLArrlsrrlrhFPVPPRVTFDNDAsNRYTVLEV 793

                       170
                ....*....|....*...
gi 18394414 217 ESADRPGLLVELVKIISD 234
Cdd:COG2844 794 SALDRPGLLYDIARVLAD 811
ACT_UUR-ACR-like cd04873
ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) ...
 212-270 4.34e-03

ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.


:

Pssm-ID: 153145 [Multi-domain]  Cd Length: 70  Bit Score: 35.22  E-value: 4.34e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18394414 212 SLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQ 270
Cdd:cd04873   1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERI 59
 
Name Accession Description Interval E-value
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 76-234 8.08e-08

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 53.22  E-value: 8.08e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  76 ADSDKVPTPVVIIDQDSDPDATvlEVTF--GDRLGALLDTMNALKNLGLNVVKANVY-------LDSsgkhnkFAITRAD 146
Cdd:COG2844 659 LRADDSGKPLVLIRPDPDRGGT--EVFVytPDRPGLFARIAGALAALGLNILDARIHttrdgyaLDT------FIVLDPD 730

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414 147 sGRKVEDPELLEAIRLTVINNLLefhpesssqlamgaafGVLPPTEPID---------VDIATHITIEDDG-PDRSLLFI 216
Cdd:COG2844 731 -GEPIDDPDRLERIEQALEEALS----------------GEVPLPEPLArrlsrrlrhFPVPPRVTFDNDAsNRYTVLEV 793

                       170
                ....*....|....*...
gi 18394414 217 ESADRPGLLVELVKIISD 234
Cdd:COG2844 794 SALDRPGLLYDIARVLAD 811
UTase_glnD TIGR01693
[Protein-PII] uridylyltransferase; This model describes GlnD, the uridylyltransferase ...
 73-277 4.38e-07

[Protein-PII] uridylyltransferase; This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]


Pssm-ID: 273761 [Multi-domain]  Cd Length: 850  Bit Score: 50.87  E-value: 4.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414    73 GSAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKH-NKFAITRADSGRKV 151
Cdd:TIGR01693 645 ESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAlDTFVVQDLFGSPPA 724

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414   152 EDPELLEAIRLTVinnllefhpESSSQLAMGAAFGVLPPTEPIDVD---IATHITIEDDG-PDRSLLFIESADRPGLLVE 227
Cdd:TIGR01693 725 AERVFQELLQGLV---------DVLAGLAKDPDTISARRARRRRLQhfaVPPRVTILNTAsRKATIMEVRALDRPGLLAR 795

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18394414   228 LVKIISDISVAVESGEFDTEGLLAKVKFHV-----SYRNKALIKPLQQVLANSLR 277
Cdd:TIGR01693 796 VGRTLEELGLSIQSAKITTFGEKAEDVFYVtdlfgLKLTDEEEQRLLEVLAASVA 850
PRK05092 PRK05092
PII uridylyl-transferase; Provisional
 88-258 3.41e-05

PII uridylyl-transferase; Provisional


Pssm-ID: 235342 [Multi-domain]  Cd Length: 931  Bit Score: 45.24  E-value: 3.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414   88 IDQDSDPDATVLEVTF--GDRLGALLDTMNALKNLGLNVVKANVYLDSSGKH-NKFAITRADsGRKVEDPELLEAIRlTV 164
Cdd:PRK05092 722 TEVRPDPARGVTEVTVlaADHPGLFSRIAGACAAAGANIVDARIFTTTDGRAlDTFWIQDAF-GRDEDEPRRLARLA-KA 799

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  165 INNLLEFHPESSSQLAmgAAFGVLPPTEPIDVdiATHITIEDDGPDR-SLLFIESADRPGLLVELVKIISDISVAVESGE 243
Cdd:PRK05092 800 IEDALSGEVRLPEALA--KRTKPKKRARAFHV--PPRVTIDNEASNRfTVIEVNGRDRPGLLYDLTRALSDLNLNIASAH 875

                        170
                 ....*....|....*
gi 18394414  244 FDTEGLLAKVKFHVS 258
Cdd:PRK05092 876 IATYGERAVDVFYVT 890
ACT_ACR_4 cd04926
C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed ...
 99-161 1.19e-03

C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein); This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153198  Cd Length: 72  Bit Score: 36.94  E-value: 1.19e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18394414  99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRAdSGRKVeDPELLEAIR 161
Cdd:cd04926   4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVR 64
ACT_UUR-ACR-like cd04873
ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) ...
 212-270 4.34e-03

ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153145 [Multi-domain]  Cd Length: 70  Bit Score: 35.22  E-value: 4.34e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18394414 212 SLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQ 270
Cdd:cd04873   1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERI 59
 
Name Accession Description Interval E-value
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 76-234 8.08e-08

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 53.22  E-value: 8.08e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  76 ADSDKVPTPVVIIDQDSDPDATvlEVTF--GDRLGALLDTMNALKNLGLNVVKANVY-------LDSsgkhnkFAITRAD 146
Cdd:COG2844 659 LRADDSGKPLVLIRPDPDRGGT--EVFVytPDRPGLFARIAGALAALGLNILDARIHttrdgyaLDT------FIVLDPD 730

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414 147 sGRKVEDPELLEAIRLTVINNLLefhpesssqlamgaafGVLPPTEPID---------VDIATHITIEDDG-PDRSLLFI 216
Cdd:COG2844 731 -GEPIDDPDRLERIEQALEEALS----------------GEVPLPEPLArrlsrrlrhFPVPPRVTFDNDAsNRYTVLEV 793

                       170
                ....*....|....*...
gi 18394414 217 ESADRPGLLVELVKIISD 234
Cdd:COG2844 794 SALDRPGLLYDIARVLAD 811
UTase_glnD TIGR01693
[Protein-PII] uridylyltransferase; This model describes GlnD, the uridylyltransferase ...
 73-277 4.38e-07

[Protein-PII] uridylyltransferase; This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]


Pssm-ID: 273761 [Multi-domain]  Cd Length: 850  Bit Score: 50.87  E-value: 4.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414    73 GSAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKH-NKFAITRADSGRKV 151
Cdd:TIGR01693 645 ESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAlDTFVVQDLFGSPPA 724

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414   152 EDPELLEAIRLTVinnllefhpESSSQLAMGAAFGVLPPTEPIDVD---IATHITIEDDG-PDRSLLFIESADRPGLLVE 227
Cdd:TIGR01693 725 AERVFQELLQGLV---------DVLAGLAKDPDTISARRARRRRLQhfaVPPRVTILNTAsRKATIMEVRALDRPGLLAR 795

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 18394414   228 LVKIISDISVAVESGEFDTEGLLAKVKFHV-----SYRNKALIKPLQQVLANSLR 277
Cdd:TIGR01693 796 VGRTLEELGLSIQSAKITTFGEKAEDVFYVtdlfgLKLTDEEEQRLLEVLAASVA 850
PRK05092 PRK05092
PII uridylyl-transferase; Provisional
 88-258 3.41e-05

PII uridylyl-transferase; Provisional


Pssm-ID: 235342 [Multi-domain]  Cd Length: 931  Bit Score: 45.24  E-value: 3.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414   88 IDQDSDPDATVLEVTF--GDRLGALLDTMNALKNLGLNVVKANVYLDSSGKH-NKFAITRADsGRKVEDPELLEAIRlTV 164
Cdd:PRK05092 722 TEVRPDPARGVTEVTVlaADHPGLFSRIAGACAAAGANIVDARIFTTTDGRAlDTFWIQDAF-GRDEDEPRRLARLA-KA 799

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  165 INNLLEFHPESSSQLAmgAAFGVLPPTEPIDVdiATHITIEDDGPDR-SLLFIESADRPGLLVELVKIISDISVAVESGE 243
Cdd:PRK05092 800 IEDALSGEVRLPEALA--KRTKPKKRARAFHV--PPRVTIDNEASNRfTVIEVNGRDRPGLLYDLTRALSDLNLNIASAH 875

                        170
                 ....*....|....*
gi 18394414  244 FDTEGLLAKVKFHVS 258
Cdd:PRK05092 876 IATYGERAVDVFYVT 890
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
 80-161 1.05e-03

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 40.51  E-value: 1.05e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394414  80 KVPtPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV--Y----LDSsgkhnkFAITRADsGRKVED 153
Cdd:COG2844 773 PVP-PRVTFDNDASNRYTVLEVSALDRPGLLYDIARVLADLGLNIHSAKIatLgervEDV------FYVTDLD-GQKLTD 844


                ....*...
gi 18394414 154 PELLEAIR 161
Cdd:COG2844 845 PERQEALR 852
ACT_ACR_4 cd04926
C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed ...
 99-161 1.19e-03

C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein); This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153198  Cd Length: 72  Bit Score: 36.94  E-value: 1.19e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18394414  99 LEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRAdSGRKVeDPELLEAIR 161
Cdd:cd04926   4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVR 64
ACT_UUR-ACR-like cd04873
ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) ...
 212-270 4.34e-03

ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153145 [Multi-domain]  Cd Length: 70  Bit Score: 35.22  E-value: 4.34e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18394414 212 SLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQ 270
Cdd:cd04873   1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERI 59
PRK03381 PRK03381
PII uridylyl-transferase; Provisional
 81-129 6.85e-03

PII uridylyl-transferase; Provisional


Pssm-ID: 235123 [Multi-domain]  Cd Length: 774  Bit Score: 38.05  E-value: 6.85e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 18394414   81 VPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANV 129
Cdd:PRK03381 692 AAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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