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Conserved domains on  [gi|19173020|ref|NP_597571|]
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uncharacterized protein ECU03_0600 [Encephalitozoon cuniculi GB-M1]

Protein Classification

COG5576 family protein( domain architecture ID 11475647)

COG5576 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1-122 5.22e-37

Homeodomain-containing transcription factor [Transcription];


:

Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 123.32  E-value: 5.22e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19173020   1 MRKNDFDVREMNAALGILKLAREGRGDSDEPDTRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQN 80
Cdd:COG5576  22 TIKTTKNKREVEAADSEMKLERKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 19173020  81 ERSRKERGGRLGKRTR-----GGKSESIDPVRLFKVIMKVLEKNREG 122
Cdd:COG5576 102 KRAKEKKKRSGKVEQRpgeeeADLAKIGSLSTGQISIIETLEFSRTS 148
 
Name Accession Description Interval E-value
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1-122 5.22e-37

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 123.32  E-value: 5.22e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19173020   1 MRKNDFDVREMNAALGILKLAREGRGDSDEPDTRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQN 80
Cdd:COG5576  22 TIKTTKNKREVEAADSEMKLERKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 19173020  81 ERSRKERGGRLGKRTR-----GGKSESIDPVRLFKVIMKVLEKNREG 122
Cdd:COG5576 102 KRAKEKKKRSGKVEQRpgeeeADLAKIGSLSTGQISIIETLEFSRTS 148
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 33-87 6.47e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 53.79  E-value: 6.47e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 19173020  33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSRKER 87
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
Homeodomain pfam00046
Homeodomain;
33-84 7.28e-11

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 53.66  E-value: 7.28e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 19173020    33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSR 84
Cdd:pfam00046   3 KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 33-84 2.53e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.56  E-value: 2.53e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 19173020     33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSR 84
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
 
Name Accession Description Interval E-value
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1-122 5.22e-37

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 123.32  E-value: 5.22e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19173020   1 MRKNDFDVREMNAALGILKLAREGRGDSDEPDTRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQN 80
Cdd:COG5576  22 TIKTTKNKREVEAADSEMKLERKQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 19173020  81 ERSRKERGGRLGKRTR-----GGKSESIDPVRLFKVIMKVLEKNREG 122
Cdd:COG5576 102 KRAKEKKKRSGKVEQRpgeeeADLAKIGSLSTGQISIIETLEFSRTS 148
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 33-87 6.47e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 53.79  E-value: 6.47e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 19173020  33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSRKER 87
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
Homeodomain pfam00046
Homeodomain;
33-84 7.28e-11

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 53.66  E-value: 7.28e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 19173020    33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSR 84
Cdd:pfam00046   3 KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 33-84 2.53e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 49.56  E-value: 2.53e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 19173020     33 TRTRKTTFQMMVLKEVFKIAPHPSTLTKADLALMIKLPLKAVQIWFQNERSR 84
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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