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Conserved domains on  [gi|42632235|ref|NP_976118|]
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ATP synthase F0 subunit 6 (mitochondrion) [Sorex unguiculatus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-227 2.99e-141

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 393.93  E-value: 2.99e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFI 80
Cdd:MTH00101   1 MNENLFASFITPTIL-GLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   81 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42632235  161 LTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-227 2.99e-141

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 393.93  E-value: 2.99e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFI 80
Cdd:MTH00101   1 MNENLFASFITPTIL-GLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   81 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42632235  161 LTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-226 8.39e-56

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 177.40  E-value: 8.39e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235     6 FASFATPTMMMGLPIVVLIILFPSIlfpTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNL 85
Cdd:TIGR01131  10 ITLFSLTLLSLILLLSLLIFLISSS---LSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    86 LGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANI 165
Cdd:TIGR01131  87 LGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANI 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 42632235   166 TAGHLLIHLIGGATLVLMSISPITafITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDN 226
Cdd:TIGR01131 167 SAGHLLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-223 8.28e-43

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 141.77  E-value: 8.28e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  66 GQTWTLMLISLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIII 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235 146 ETISLFIQPMALAVRLTANITAGHLLIHLIGGATLVLMSISpitAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYL 223
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSV---GLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
14-224 1.18e-40

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 138.39  E-value: 1.18e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    14 MMMGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMA-IHNQKGQTWTLMLISLILFIGSTNLLGLL--- 89
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    90 PHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK-TKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANITAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42632235   169 HLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLH 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 13-225 1.27e-26

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 101.69  E-value: 1.27e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  13 TMMMGLPIVVLIILFpSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNLLGLLPHS 92
Cdd:COG0356   2 TVLMSWLAMLLLLLL-FLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  93 FTPTTQLSMNLGMAIPLWAGTVITGFRYK-TKASLAHFLPQGTPlPLIPMLIIIETISLFIQPMALAVRLTANITAGHLL 171
Cdd:COG0356  81 FPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHII 159

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 42632235 172 IHLIGGATLVLMSispitAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:COG0356 160 LLLLAGLAPFLLL-----GVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-227 2.99e-141

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 393.93  E-value: 2.99e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFI 80
Cdd:MTH00101   1 MNENLFASFITPTIL-GLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   81 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42632235  161 LTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 8.49e-89

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 261.30  E-value: 8.49e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTP-NRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILF 79
Cdd:MTH00120   1 MNLNFFDQFSSPELL-GIPLILLAMLIPALLIPSPkNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   80 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAV 159
Cdd:MTH00120  80 LLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235  160 RLTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00120 160 RLTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 1.11e-86

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 255.95  E-value: 1.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTP-NRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILF 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYL-GIPLIALALTLPWILFPTPtSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   80 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAV 159
Cdd:MTH00132  80 LITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42632235  160 RLTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDN 226
Cdd:MTH00132 160 RLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 1.80e-86

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 255.28  E-value: 1.80e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTP-NRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILF 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLL-GIPLIMLAMLLPWLLFPTPtNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   80 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAV 159
Cdd:MTH00073  80 LITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235  160 RLTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00073 160 RLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 3.22e-72

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 219.05  E-value: 3.22e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMmGLPIVVLIILFPSILFPTP-NRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILF 79
Cdd:MTH00179   1 MMLSMFDQFESPSLL-GIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   80 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAV 159
Cdd:MTH00179  80 LLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGV 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235  160 RLTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00179 160 RLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-226 8.39e-56

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 177.40  E-value: 8.39e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235     6 FASFATPTMMMGLPIVVLIILFPSIlfpTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNL 85
Cdd:TIGR01131  10 ITLFSLTLLSLILLLSLLIFLISSS---LSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    86 LGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANI 165
Cdd:TIGR01131  87 LGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANI 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 42632235   166 TAGHLLIHLIGGATLVLMSISPITafITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDN 226
Cdd:TIGR01131 167 SAGHLLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-226 1.94e-48

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 158.60  E-value: 1.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFaTPTMMMGLPIVVL--IILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLIL 78
Cdd:MTH00035   3 INNSIFGQF-SPDTILFIPLTLLssVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   79 FIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALA 158
Cdd:MTH00035  82 LILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALG 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235  159 VRLTANITAGHLLIHLIGGATLVLMSiSPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDN 226
Cdd:MTH00035 162 LRLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-222 2.19e-48

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 158.41  E-value: 2.19e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFaTPTMMMGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFI 80
Cdd:MTH00157   1 MMTNLFSIF-DPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   81 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42632235  161 LTANITAGHLLIHLIGGatlVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLY 222
Cdd:MTH00157 160 LAANMIAGHLLLTLLGN---TGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-223 8.28e-43

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 141.77  E-value: 8.28e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  66 GQTWTLMLISLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIII 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42632235 146 ETISLFIQPMALAVRLTANITAGHLLIHLIGGATLVLMSISpitAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYL 223
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSV---GLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
14-224 1.18e-40

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 138.39  E-value: 1.18e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    14 MMMGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMA-IHNQKGQTWTLMLISLILFIGSTNLLGLL--- 89
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    90 PHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK-TKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANITAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42632235   169 HLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLH 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-225 2.49e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 137.69  E-value: 2.49e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMMGLPIVVLIILFPSILFPTPNrlinnrLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFI 80
Cdd:MTH00173   9 FDDHNSSFSSLSFLMWLLSLMSLFFFSSSVWVSSSN------LSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   81 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVR 160
Cdd:MTH00173  83 ISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVR 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42632235  161 LTANITAGHLLIHLIGGA-TLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:MTH00173 163 LLANISAGHIVLTLIGNYlSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-227 5.03e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 134.39  E-value: 5.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    1 MNENLFASFATPTMMMGLPIVVLII--LFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLIL 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWItlLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   79 FIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALA 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42632235  159 VRLTANITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 13-225 8.39e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 120.92  E-value: 8.39e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   13 TMMMGLPIVVLIILFPSilfptpNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNLLGLLPHS 92
Cdd:MTH00172  21 SIMMILVIIVVLLLFKG------IKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLFPYV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   93 FTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANITAGHLLI 172
Cdd:MTH00172  95 FTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLF 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 42632235  173 HLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:MTH00172 175 AILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 8-225 3.81e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 117.03  E-value: 3.81e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    8 SFATPTMMMGLPIVVLIILFPSilfptpNRLINNRLVSLQQwLIQLTSKQMMAIH-NQKGQTWTLMLISLILFIGSTNLL 86
Cdd:MTH00175  27 TFTNSSMMMVLAVIIFWLLLKG------DKLIPNRWQSIME-LIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNIL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   87 GLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANIT 166
Cdd:MTH00175 100 GLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANIS 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  167 AGHLLIHLIGGATL-VLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:MTH00175 180 AGHLLFAILSGFAFnMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 4-227 2.49e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 114.44  E-value: 2.49e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    4 NLFASFATPTMMMglpIVVLIILFPSILFPTpnrlINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGST 83
Cdd:MTH00005  15 SLFNNLSSTAFWA---FNFSIILLLSSSFWI----TPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   84 NLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTA 163
Cdd:MTH00005  88 NLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAA 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42632235  164 NITAGHLLIHLIGGATLVLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHDNT 227
Cdd:MTH00005 168 NMSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 13-225 1.27e-26

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 101.69  E-value: 1.27e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  13 TMMMGLPIVVLIILFpSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNLLGLLPHS 92
Cdd:COG0356   2 TVLMSWLAMLLLLLL-FLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  93 FTPTTQLSMNLGMAIPLWAGTVITGFRYK-TKASLAHFLPQGTPlPLIPMLIIIETISLFIQPMALAVRLTANITAGHLL 171
Cdd:COG0356  81 FPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHII 159

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 42632235 172 IHLIGGATLVLMSispitAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:COG0356 160 LLLLAGLAPFLLL-----GVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 6-225 7.05e-25

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 97.56  E-value: 7.05e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235    6 FASFATPTMMMGLPIVVLIILFPSILFPTPNRLINNRLVSLQQWLIQLTSKQMMAIHNQKGQTWTLMLISLILFIGSTNL 85
Cdd:PRK05815   9 FGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   86 LGLLP-HSFTPTTQLSMNLGMAIPLWAGTVITGFRYKtkaSLAHFLPQGTPLPlIPMLIIIETISLFIQPMALAVRLTAN 164
Cdd:PRK05815  89 LGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSLRLFGN 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 42632235  165 ITAGHLLIHLIGGatlvLMSISPITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYLHD 225
Cdd:PRK05815 165 MLAGELILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 65-225 3.68e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 91.15  E-value: 3.68e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   65 KGQTWTLMLISLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTPLPLIPMLII 144
Cdd:MTH00174  86 KGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTI 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  145 IETISLFIQPMALAVRLTANITAGHLLIHLIGGATLVLMSISP-ITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYL 223
Cdd:MTH00174 166 IETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGIlIGSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYL 245


                 ..
gi 42632235  224 HD 225
Cdd:MTH00174 246 RD 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 73-223 1.18e-18

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 82.87  E-value: 1.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   73 LISLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFR-YKTKASLAHfLPQGTPLPLIPMLIIIETISLF 151
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42632235  152 IQPMALAVRLTANITAGHLLIHLIGGATLVLMsiSPITAF---ITFIILVMLtvLEFAVALIQAYVFTLLVSLYL 223
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVILSLIFISFILK--SYIVAVavsVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 13-223 1.61e-11

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 62.60  E-value: 1.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   13 TMMMGLPIVVLIILFPSILFPTPNRL-INNRLVSLQQWLIQLTSKQMM-AIHNQKGQTWTLMLISLILFIGSTNLLGLLP 90
Cdd:PRK13417  99 TMMWIVAFFLFLIFIPAANIIAKNPLkVQSRFANTVEVFVNFLRKDIVdESMHGHGHSYYHYIFTLFFFILFCNLMGLVP 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   91 ----------------------------HSF-------TPTTQLSMNLGMAIPLWAGTVITGFRYKTKASLAHFLPQGTP 135
Cdd:PRK13417 179 svgeltvvasdygglvalgvmdhtphalPTFakvwsgiTVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVP 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  136 LPLIPMLIIIETI-SLFIQPMALAVRLTANITAGHLLIHLIGGatLVLMSISPITAFITFIILVMLTVLEFAVALIQAYV 214
Cdd:PRK13417 259 LLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVIILALMG--FIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYI 336


                 ....*....
gi 42632235  215 FTLLVSLYL 223
Cdd:PRK13417 337 FVLLTSLFV 345
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 72-223 2.88e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 60.38  E-value: 2.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   72 MLISLILFigstNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYKTKASlaHFLPQGTPLPLIPM-LIIIETISL 150
Cdd:MTH00087  58 TFIVLLLF----CFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSE 131

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42632235  151 FIQPMALAVRLTANITAGHLLIHLIGgatlvlmsispITAFITFIILVMLTVLEFAVALIQAYVFTLLVSLYL 223
Cdd:MTH00087 132 LSRPLALTLRLTVNLMVGHLISSLLN-----------FLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 75-223 1.20e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 41.65  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235   75 SLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPL-----WAGTVITGFRyktkASLAHFLPQGtplpliPMLIIIETIS 149
Cdd:PRK13420  80 TLWIFILVANLIGLIPGFHSPTADLSVTAALALLVffsvhWFGIRAEGLR----EYLKHYLSPS------PFLLPFHLIS 149

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42632235  150 LFIQPMALAVRLTANITAGHLlihligGATLVLMsispITAFITFIILVMLTVLEfavALIQAYVFTLLVSLYL 223
Cdd:PRK13420 150 EITRTLALAVRLFGNIMSLEL------AALLVLL----VAGFLVPVPILMLHIIE---ALVQAYIFGMLALIYI 210
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 127-216 1.46e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 37.94  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42632235  127 AHFLPQGTPLPLIPMLIIIETISLFIQPMALAVRLTANITAGHLlihliGGATLVLMSISpitAFITFIILVMLTVLEFA 206
Cdd:MTH00050  80 SSFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCF-----GGVALGNLCFI---SYWWFLVLFFLFFYEVF 151

                         90
                 ....*....|
gi 42632235  207 VALIQAYVFT 216
Cdd:MTH00050 152 VALVHWFIVS 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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