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Conserved domains on  [gi|6647819|sp|O25841|]
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RecName: Full=Single-stranded DNA-binding protein; Short=SSB

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11483315)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-179 3.28e-115

single-stranded DNA-binding protein; Provisional


:

Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 324.49  E-value: 3.28e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENSNNAYPANHNAPSQDPF---NQAYAQNAYAKENLQ 157
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYmnqAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|..
gi 6647819   158 AQPSKYQNSVPEINIDEEEIPF 179
Cdd:PRK08486 161 AQPPKYENSVPEIDIDEEEIPF 182
 
Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-179 3.28e-115

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 324.49  E-value: 3.28e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENSNNAYPANHNAPSQDPF---NQAYAQNAYAKENLQ 157
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYmnqAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|..
gi 6647819   158 AQPSKYQNSVPEINIDEEEIPF 179
Cdd:PRK08486 161 AQPPKYENSVPEIDIDEEEIPF 182
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
1-179 1.07e-70

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 211.12  E-value: 1.07e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819      1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     81 YESWMDQTGKKNSRHTITADSLQFMDKKsdNPQANAMQDSIMHENSNNAYpanhnapsqdpfnQAYAQNAYAKENLQAQP 160
Cdd:TIGR00621  83 TRKWEDQNGQKRSKTEIIADNVQLLDLL--GARAQGGEFSGGGGSGNRPQ-------------GGQEQSATGKDPAQSAP 147
                         170
                  ....*....|....*....
gi 6647819    161 SkyQNSVPEINIDEEEIPF 179
Cdd:TIGR00621 148 Q--SGSADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-115 1.88e-44

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 142.67  E-value: 1.88e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYE 82
Cdd:COG0629   2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
                        90       100       110
                ....*....|....*....|....*....|...
gi 6647819   83 SWMDQTGKKNSRHTITADSLQFMDKKSDNPQAN 115
Cdd:COG0629  82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
2-105 8.40e-41

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 133.13  E-value: 8.40e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819      2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEG-DEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79
                          90       100
                  ....*....|....*....|....
gi 6647819     82 ESWMDQTGKKNSRHTITADSLQFM 105
Cdd:pfam00436  80 RKYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
5-104 1.69e-32

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 111.94  E-value: 1.69e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    5 VIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESW 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEE-EEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79
                        90       100
                ....*....|....*....|
gi 6647819   85 MDQTGKKNSRHTITADSLQF 104
Cdd:cd04496  80 EDKDGQKRYGTEVVADRIEF 99
 
Name Accession Description Interval E-value
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
1-179 3.28e-115

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 324.49  E-value: 3.28e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENSNNAYPANHNAPSQDPF---NQAYAQNAYAKENLQ 157
Cdd:PRK08486  81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYmnqAQSYNQNAYAKENQQ 160
                        170       180
                 ....*....|....*....|..
gi 6647819   158 AQPSKYQNSVPEINIDEEEIPF 179
Cdd:PRK08486 161 AQPPKYENSVPEIDIDEEEIPF 182
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
1-179 1.07e-70

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 211.12  E-value: 1.07e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819      1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     81 YESWMDQTGKKNSRHTITADSLQFMDKKsdNPQANAMQDSIMHENSNNAYpanhnapsqdpfnQAYAQNAYAKENLQAQP 160
Cdd:TIGR00621  83 TRKWEDQNGQKRSKTEIIADNVQLLDLL--GARAQGGEFSGGGGSGNRPQ-------------GGQEQSATGKDPAQSAP 147
                         170
                  ....*....|....*....
gi 6647819    161 SkyQNSVPEINIDEEEIPF 179
Cdd:TIGR00621 148 Q--SGSADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-115 1.88e-44

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 142.67  E-value: 1.88e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYE 82
Cdd:COG0629   2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
                        90       100       110
                ....*....|....*....|....*....|...
gi 6647819   83 SWMDQTGKKNSRHTITADSLQFMDKKSDNPQAN 115
Cdd:COG0629  82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
2-105 8.40e-41

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 133.13  E-value: 8.40e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819      2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEG-DEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79
                          90       100
                  ....*....|....*....|....
gi 6647819     82 ESWMDQTGKKNSRHTITADSLQFM 105
Cdd:pfam00436  80 RKYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
5-104 1.69e-32

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 111.94  E-value: 1.69e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    5 VIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESW 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEE-EEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79
                        90       100
                ....*....|....*....|
gi 6647819   85 MDQTGKKNSRHTITADSLQF 104
Cdd:cd04496  80 EDKDGQKRYGTEVVADRIEF 99
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
3-105 5.23e-29

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 105.65  E-value: 5.23e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK-KQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK06958   5 NKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKdKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRT 84
                         90       100
                 ....*....|....*....|....
gi 6647819    82 ESWMDQTGKKNSRHTITADSLQFM 105
Cdd:PRK06958  85 RKWQGQDGQDRYSTEIVADQMQML 108
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
3-179 3.85e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 90.37  E-value: 3.85e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK-KQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK05733   6 NKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTdKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQT 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    82 ESWmDQTGKKNSRHTITAD---SLQFMDKKSDNPQanamQDSIMHENSNNAYPanhNAPSQDPFNQAYAQNAYAKENLQA 158
Cdd:PRK05733  86 REW-EKDGIKRYTTEIVVDmqgTMQLLGGRPQGDD----QGGQGGGNYNQSAP---RQQAQRPQQAAQQQSRPAPQQPAP 157
                        170       180
                 ....*....|....*....|.
gi 6647819   159 QPSkyqnsvPEINIDEEEIPF 179
Cdd:PRK05733 158 QPA------ADFDSFDDDIPF 172
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
3-179 1.15e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 89.14  E-value: 1.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK-KQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK09010   7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRdKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRT 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    82 ESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENSNNAYpanhNAPSQDPFNQAYAQNAYAKENLQAQPS 161
Cdd:PRK09010  87 RKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGQQQGGW----GQPQQPQGGNQFSGGAQSRPQQSAPAA 162
                        170
                 ....*....|....*...
gi 6647819   162 KYQNsvPEINIDeEEIPF 179
Cdd:PRK09010 163 PSNE--PPMDFD-DDIPF 177
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
3-179 1.66e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 88.49  E-value: 1.66e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLF-GRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK06863   5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFyRRQAEVAGEYLRKGSQVYVEGRLKT 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    82 ESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAmqdsimhensNNAYPANHNAPSQDPFNQAYAQNAYAKENLQAQPs 161
Cdd:PRK06863  85 RKWQDQNGQDRYTTEIQGDVLQMLGGRNQRNAGGY----------GNSGPAPQQSYQAGQTNNGNSQQASRPAPQQAAP- 153
                        170
                 ....*....|....*...
gi 6647819   162 kyQNSVPEINIDeEEIPF 179
Cdd:PRK06863 154 --QAEPPMDGFD-DDIPF 168
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
3-179 9.23e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 86.71  E-value: 9.23e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK-KQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK13732   7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRdKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    82 ESWMDQtGKKNSRHTITADSLQFMDKKSDNPQANAMQDSimhENSNNAYPANHNAPSQDpfnqAYAQNAYAKENLQAQPS 161
Cdd:PRK13732  87 RSWEDN-GITRYVTEILVKTTGTMQMLGRAPQQNAQPQP---GPQQNGQPQSADATKKG----GAKTKGRGRKAAQPEPQ 158
                        170
                 ....*....|....*...
gi 6647819   162 KYQNSVPEINIDeEEIPF 179
Cdd:PRK13732 159 PQPPEGEDYGFS-DDIPF 175
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
3-179 2.29e-21

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 85.38  E-value: 2.29e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYE 82
Cdd:PRK08763   6 NKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    83 SWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSimhensnnayPANHNAPSQDpfnqayaqNAYAKENLQAQPSK 162
Cdd:PRK08763  86 KFTGQDGQERYVTEIVADEMQMLGGRGEGGGGGGGGIR----------PQRQPAPRQN--------NGQDYAPRRQQPAP 147
                        170
                 ....*....|....*..
gi 6647819   163 YQNSVPEINIDEEEIPF 179
Cdd:PRK08763 148 QQSAPPMDDFADDDIPF 164
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
3-120 1.22e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 79.73  E-value: 1.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKqdgtlgEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYE 82
Cdd:PRK07459   4 NSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRD------DEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFD 77
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 6647819    83 SWMD-QTGKKNSRHTITADSLQFMDKKSDNPQANAMQDS 120
Cdd:PRK07459  78 RWTDrNTGEDRSKPVIRVDRLELLGSKRDSEGNANPSNS 116
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
1-179 2.74e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 80.23  E-value: 2.74e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlgEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK06751   1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGE--READFINCVIWRKQAENVANYLKKGSLAGVDGRLQ 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQanamqdsimHENSNNAYP--ANHNAPSQDPFNQAY---AQNAYAKEN 155
Cdd:PRK06751  79 TRNYEGQDGKRVYVTEVLAESVQFLEPRNGGGE---------QRGSFNQQPsgAGFGNQSSNPFGQSSnsgNQGNQGNSG 149
                        170       180
                 ....*....|....*....|....
gi 6647819   156 LQAQPSKYQNSVPEINIDEEEIPF 179
Cdd:PRK06751 150 FTKNDDPFSNVGQPIDISDDDLPF 173
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
1-179 6.07e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 79.16  E-value: 6.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlgEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK07275   1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGE--READFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNpqanamqdsimHENSNNAYPANHNapsQDPFNQAYAQNAYAKENLQAQP 160
Cdd:PRK07275  79 TRNYENQQGQRVYVTEVVADNFQMLESRATR-----------EGGSGGSYNGGFN---NAPSANSYSAPAQQTPNFGRDE 144
                        170
                 ....*....|....*....
gi 6647819   161 SKYQNSVPeINIDEEEIPF 179
Cdd:PRK07275 145 SPFGNSNP-MDISDDDLPF 162
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
1-110 6.07e-18

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 75.07  E-value: 6.07e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKqdgTLGEE-VCFIDARLFGRTAEIANQYLSKGSSVLIEGRL 79
Cdd:PRK06752   1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRN---SLGEQqVDFINCVVWRKSAENVTEYCTKGSLVGITGRI 77
                         90       100       110
                 ....*....|....*....|....*....|.
gi 6647819    80 TYESWMDQTGKKNSRHTITADSLQFMDKKSD 110
Cdd:PRK06752  78 HTRNYEDDQGKRIYITEVVIESITFLERRRE 108
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
1-124 1.97e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 69.02  E-value: 1.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTlgEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK07274   1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNGE--READFINVVLWGKLAETLASYASKGSLISIDGELR 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 6647819    81 YESWmDQTGKKNSRHTITADSLQFMDKKS-----DNPQANAMQDSIMHE 124
Cdd:PRK07274  79 TRKY-EKDGQTHYVTEVLCQSFQLLESRAqramrENNVGNDLADLVLEE 126
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
5-179 3.95e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 55.68  E-value: 3.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     5 VIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLgeevcFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESW 84
Cdd:PRK06293   4 GYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVGSKDETV-----WCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESY 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819    85 MDQTGKKNSRHTITADSLQF--MDKKSDNPQANAMQDSIMH-ENSNNAYpaNHNAPSQDPFNqAYAQNAYAKENLQAQps 161
Cdd:PRK06293  79 VDKDGSPQSSLVVSVDTIKFspFGRNEGSRQPSAGEDEGQQrGYDNVSI--GFEGESLDTES-ALDKDMYAGYGQDQQ-- 153
                        170
                 ....*....|....*...
gi 6647819   162 kyqnsvpeinIDEEEIPF 179
Cdd:PRK06293 154 ----------YASEDVPF 161
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
8-100 1.20e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 54.66  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     8 VGRLTRNVELKYLPSGSAAATIGLA-TSRRFKKQ-----DGtlgeEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81
Cdd:PRK07772  10 VGNLTADPELRFTPSGAAVANFTVAsTPRTFDRQtnewkDG----EALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQ 85
                         90
                 ....*....|....*....
gi 6647819    82 ESWMDQTGKKNSRHTITAD 100
Cdd:PRK07772  86 RSYETREGEKRTVVELEVD 104
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
3-89 3.01e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 53.27  E-value: 3.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     3 NKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK-KQDGTLGEEVCFIDARLFGR-TAEIANQYLSKGSSVLIEGRLT 80
Cdd:PRK06341   6 NKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRdRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQLQ 85

                 ....*....
gi 6647819    81 YESWMDQTG 89
Cdd:PRK06341  86 TRKWTDQSG 94
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
2-140 3.16e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 50.49  E-value: 3.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647819     2 FNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFK------KQDGTLGEEVCFIDARLfgrtAEIANQYLSKGSSVLI 75
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKdritseRKERTEWHRVVIFSEGL----VSVVERYVTKGSKLYI 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6647819    76 EGRLTYESWMDQTGKKNSRHTITADS----LQFMDKKSDNpqaNAMQDSiMHENSNNAYPANHNAPSQD 140
Cdd:PRK06642  81 EGSLQTRKWNDNSGQEKYTTEVVLQNfnsqLILLDSKNSN---NHNQDS-GHSEYKHPETKNHSFDHSD 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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