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Conserved domains on  [gi|1083527493|gb|OGG27485|]
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hypothetical protein A2960_04280 [Candidatus Gottesmanbacteria bacterium RIFCSPLOWO2_01_FULL_39_12b]

Protein Classification

type II secretion system protein( domain architecture ID 11450365)

type II secretion system protein similar to Pseudomonas aeruginosa type II secretion system protein H, which is involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins; required for the translocation of a variety of enzymes across the outer membrane

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 2-33 1.40e-04

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 38.74  E-value: 1.40e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1083527493   2 KGFTLIELLVVLSFFASFFGLATVRLLSSVQK 33
Cdd:COG2165    11 RGFTLIELLVVIAIIGILAALALPALQGARER 42
 
Name Accession Description Interval E-value
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 2-33 1.40e-04

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 38.74  E-value: 1.40e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1083527493   2 KGFTLIELLVVLSFFASFFGLATVRLLSSVQK 33
Cdd:COG2165    11 RGFTLIELLVVIAIIGILAALALPALQGARER 42
gspJ TIGR01711
type II secretion system protein J; This model represents GspJ, one of two proteins highly ...
 3-33 4.39e-03

type II secretion system protein J; This model represents GspJ, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspI. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.


Pssm-ID: 130772 [Multi-domain]  Cd Length: 192  Bit Score: 36.05  E-value: 4.39e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1083527493   3 GFTLIELLVVLSFFASfFGLATVRLLSSVQK 33
Cdd:TIGR01711   2 GFTLLELLVAIAIFAS-LSLGAYQVLDSVMQ 31
 
Name Accession Description Interval E-value
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 2-33 1.40e-04

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 38.74  E-value: 1.40e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1083527493   2 KGFTLIELLVVLSFFASFFGLATVRLLSSVQK 33
Cdd:COG2165    11 RGFTLIELLVVIAIIGILAALALPALQGARER 42
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
2-56 3.15e-04

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 37.13  E-value: 3.15e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1083527493   2 KGFTLIELLVVLSFFASFFGLATVRLLSSVQKTTSTATLTTLISDIKSQQIKAMT 56
Cdd:COG4970     9 RGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSEAIR 63
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 2-33 3.44e-04

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 38.07  E-value: 3.44e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1083527493   2 KGFTLIELLVVLSFFAsFFGLATVRLLSSVQK 33
Cdd:COG4795     9 RGFTLLELLVALAIFA-LLLLAAYRGLDSVLR 39
gspJ TIGR01711
type II secretion system protein J; This model represents GspJ, one of two proteins highly ...
 3-33 4.39e-03

type II secretion system protein J; This model represents GspJ, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspI. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.


Pssm-ID: 130772 [Multi-domain]  Cd Length: 192  Bit Score: 36.05  E-value: 4.39e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1083527493   3 GFTLIELLVVLSFFASfFGLATVRLLSSVQK 33
Cdd:TIGR01711   2 GFTLLELLVAIAIFAS-LSLGAYQVLDSVMQ 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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