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Conserved domains on  [gi|1083760458|gb|OGI41652|]
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sulfur oxidation c-type cytochrome SoxX [Candidatus Muproteobacteria bacterium RBG_16_62_13]

Protein Classification

sulfur oxidation c-type cytochrome SoxX( domain architecture ID 10025256)

sulfur oxidation c-type cytochrome SoxX is part of the sulfur-oxidizing enzyme system (Sox) that oxidizes hydrogen sulfide, sulfur, thiosulfate, or sulfite and transfers the gained electrons to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 12-90 4.68e-26

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


:

Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 91.49  E-value: 4.68e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 12 KKGNCMACHEM--KSLSSGNVATALTNMKGRYAGEdgkKRLRAQIENPHIANKDSSMPPFGRHNILSKDEISQLVDFLLT 89
Cdd:TIGR04485  1 SKGNCLACHQIpgSEVFPGNIGPSLTGYGARYPDE---AYLRAKIADAKAVNPCTVMPRFGKNGILTEQEIEDVVAYLLT 77


                 .
gi 1083760458 90 I 90
Cdd:TIGR04485 78 L 78
 
Name Accession Description Interval E-value
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 12-90 4.68e-26

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 91.49  E-value: 4.68e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 12 KKGNCMACHEM--KSLSSGNVATALTNMKGRYAGEdgkKRLRAQIENPHIANKDSSMPPFGRHNILSKDEISQLVDFLLT 89
Cdd:TIGR04485  1 SKGNCLACHQIpgSEVFPGNIGPSLTGYGARYPDE---AYLRAKIADAKAVNPCTVMPRFGKNGILTEQEIEDVVAYLLT 77


                 .
gi 1083760458 90 I 90
Cdd:TIGR04485 78 L 78
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
12-89 4.36e-07

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 43.35  E-value: 4.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 12 KKGNCMACHemkSLSSGNVATALTNMKGRYAG-EDGKKRLRAQIENPHIAN-KDSSMPPfgrHNILSKDEISQLVDFLLT 89
Cdd:COG4654   12 KKSGCLACH---AVDKKLVGPSYKDVAKKYKGkADAVAKLAKKIKKGGSGVwGDVPMPP---HPQLSDAEAKALVKWILS 85
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 13-90 1.04e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 42.53  E-value: 1.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 13 KGNCMACHEMKSLSSGNVATALTNMKGRYAGE------DGKKRLRAQIENPHIANKDSSMPPFgrhNILSKDEISQLVDF 86
Cdd:pfam00034  8 AANCAACHGVNGEGAGAGGPDLAGLAARYPGDalgairENKHAIGGGGVDRAGGPPGTGMPAF---DGLTDEEIADLVAY 84


                 ....
gi 1083760458 87 LLTI 90
Cdd:pfam00034 85 LLSL 88
 
Name Accession Description Interval E-value
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 12-90 4.68e-26

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 91.49  E-value: 4.68e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 12 KKGNCMACHEM--KSLSSGNVATALTNMKGRYAGEdgkKRLRAQIENPHIANKDSSMPPFGRHNILSKDEISQLVDFLLT 89
Cdd:TIGR04485  1 SKGNCLACHQIpgSEVFPGNIGPSLTGYGARYPDE---AYLRAKIADAKAVNPCTVMPRFGKNGILTEQEIEDVVAYLLT 77


                 .
gi 1083760458 90 I 90
Cdd:TIGR04485 78 L 78
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
12-89 4.36e-07

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 43.35  E-value: 4.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 12 KKGNCMACHemkSLSSGNVATALTNMKGRYAG-EDGKKRLRAQIENPHIAN-KDSSMPPfgrHNILSKDEISQLVDFLLT 89
Cdd:COG4654   12 KKSGCLACH---AVDKKLVGPSYKDVAKKYKGkADAVAKLAKKIKKGGSGVwGDVPMPP---HPQLSDAEAKALVKWILS 85
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 13-90 1.04e-06

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 42.53  E-value: 1.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083760458 13 KGNCMACHEMKSLSSGNVATALTNMKGRYAGE------DGKKRLRAQIENPHIANKDSSMPPFgrhNILSKDEISQLVDF 86
Cdd:pfam00034  8 AANCAACHGVNGEGAGAGGPDLAGLAARYPGDalgairENKHAIGGGGVDRAGGPPGTGMPAF---DGLTDEEIADLVAY 84


                 ....
gi 1083760458 87 LLTI 90
Cdd:pfam00034 85 LLSL 88
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
13-90 1.11e-06

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.78  E-value: 1.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083760458  13 KGNCMACHEMKSLSSGNVATALTnmkGRYAGEDGKKRLRAQIENPHianKDSSMPPFGRHniLSKDEISQLVDFLLTI 90
Cdd:COG2010    97 EQNCAACHGADGKGGLGAAPNLT---DDALYGGDPEALVETILNGR---PGGAMPAFGGQ--LSDEEIAALAAYLRSL 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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